Classes

Class	Line #	Total Statements	Complexity	Uncovered Elements	TOTAL Coverage	Actions
AlignExportSettingsI	29	0	0	0	-1.0 -	Show methods

Class AlignExportSettingsI

Class AlignExportSettingsI	Line # 29	Total Statements 0	Complexity 0	Uncovered Elements 0	TOTAL Coverage -1.0 -

 

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1		/*
2		* Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3		* Copyright (C) $$Year-Rel$$ The Jalview Authors
4		*
5		* This file is part of Jalview.
6		*
7		* Jalview is free software: you can redistribute it and/or
8		* modify it under the terms of the GNU General Public License
9		* as published by the Free Software Foundation, either version 3
10		* of the License, or (at your option) any later version.
11		*
12		* Jalview is distributed in the hope that it will be useful, but
13		* WITHOUT ANY WARRANTY; without even the implied warranty
14		* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15		* PURPOSE. See the GNU General Public License for more details.
16		*
17		* You should have received a copy of the GNU General Public License
18		* along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19		* The Jalview Authors are detailed in the 'AUTHORS' file.
20		*/
21
22		package jalview.api;
23
24		/**
25		* An interface describing settings for including or excluding data when an
26		* alignment is output
27		*
28		*/
		- Uncovered Elements: 0 (0) Complexity: 0 Complexity Density: -
29		public interface AlignExportSettingsI
30		{
31		/**
32		* Answers true if hidden sequences should be exported, false if not
33		*
34		* @return
35		*/
36		boolean isExportHiddenSequences();
37
38		/**
39		* Answers true if hidden columns should be exported, false if not
40		*
41		* @return
42		*/
43		boolean isExportHiddenColumns();
44
45		/**
46		* Answers true if Annotations should be exported. This is available for
47		* complex flat file exports like JSON, HTML, GFF.
48		*
49		* @return
50		*/
51		boolean isExportAnnotations();
52
53		/**
54		* Answers true if Sequence Features should be exported. This is available for
55		* complex flat file exports like JSON, HTML, GFF.
56		*
57		* @return
58		*/
59		boolean isExportFeatures();
60
61		/**
62		* Answers true if Sequence Groups should be exported. This is available for
63		* complex flat file exports like JSON, HTML, GFF.
64		*
65		* @return
66		*/
67		boolean isExportGroups();
68
69		void setExportHiddenSequences(boolean b);
70
71		void setExportHiddenColumns(boolean b);
72
73		void setExportAnnotations(boolean b);
74
75		void setExportFeatures(boolean b);
76
77		void setExportGroups(boolean b);
78		}