jalviewX
File StructureSettings.java
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Classes
| Class | Line # | Actions | ||||
|---|---|---|---|---|---|---|
| StructureSettings | 39 | 3 | 2 | 5 |
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| 1 | /* vim: set ts=2: */ | |
| 2 | /** | |
| 3 | * Copyright (c) 2006 The Regents of the University of California. | |
| 4 | * All rights reserved. | |
| 5 | * | |
| 6 | * Redistribution and use in source and binary forms, with or without | |
| 7 | * modification, are permitted provided that the following conditions | |
| 8 | * are met: | |
| 9 | * 1. Redistributions of source code must retain the above copyright | |
| 10 | * notice, this list of conditions, and the following disclaimer. | |
| 11 | * 2. Redistributions in binary form must reproduce the above | |
| 12 | * copyright notice, this list of conditions, and the following | |
| 13 | * disclaimer in the documentation and/or other materials provided | |
| 14 | * with the distribution. | |
| 15 | * 3. Redistributions must acknowledge that this software was | |
| 16 | * originally developed by the UCSF Computer Graphics Laboratory | |
| 17 | * under support by the NIH National Center for Research Resources, | |
| 18 | * grant P41-RR01081. | |
| 19 | * | |
| 20 | * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDER "AS IS" AND ANY | |
| 21 | * EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE | |
| 22 | * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR | |
| 23 | * PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE REGENTS BE LIABLE | |
| 24 | * FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR | |
| 25 | * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT | |
| 26 | * OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR | |
| 27 | * BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, | |
| 28 | * WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE | |
| 29 | * OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, | |
| 30 | * EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. | |
| 31 | * | |
| 32 | */ | |
| 33 | package ext.edu.ucsf.rbvi.strucviz2; | |
| 34 | ||
| 35 | /** | |
| 36 | * This object maintains the relationship between Chimera objects and Cytoscape | |
| 37 | * objects. | |
| 38 | */ | |
| 39 | public class StructureSettings | |
| 40 | { | |
| 41 | ||
| 42 | // @Tunable(description = "Path to UCSF Chimera application", gravity = 4.0) | |
| 43 | public String chimeraPath = null; | |
| 44 | ||
| 45 | 0 |  public StructureSettings(StructureManager manager) |
| 46 | { | |
| 47 | ||
| 48 | 0 | chimeraPath = manager.getCurrentChimeraPath(null); |
| 49 | ||
| 50 | // This seems a little strange, but it has to do with the order of tunable | |
| 51 | // interceptor | |
| 52 | // handling. We need to set these selectors in our structure manager and | |
| 53 | // dynamically | |
| 54 | // pull the data out as needed.... | |
| 55 | 0 | manager.setStructureSettings(this); |
| 56 | } | |
| 57 | ||
| 58 | 0 | public String getChimeraPath() |
| 59 | { | |
| 60 | 0 | return chimeraPath; |
| 61 | } | |
| 62 | } |