Build #4

Build: #4 failed

Job: Clover and Tests failed

Stages & jobs

  1. Default Stage

Test results

  • 1,926 tests in total
  • 2 tests failed
  • 1 failure is new
  • 1 test was fixed
  • 6 minutes taken in total.

Build 4 has the following 2 errors: 1 new failure(s) occurred since the previous build.

New test failures 1
Status Test Duration
Collapse Failed EBIAlphaFoldTest testImportPAEAndStructureForMultiChainSeqs History
< 1 sec 
Classname: java.lang.Error
Message: Couln't create a mapping for this matrix.
Stacktrace:
java.lang.Error: Couln't create a mapping for this matrix.
	at jalview.ws.datamodel.alphafold.MappableContactMatrix.liftOver(MappableContactMatrix.java:189)
	at jalview.ws.datamodel.alphafold.MappableContactMatrix.liftOver(MappableContactMatrix.java:38)
	at mc_view.PDBChain.transferResidueAnnotation(PDBChain.java:715)
	at jalview.structure.StructureSelectionManager.getNWMappings(StructureSelectionManager.java:1014)
(45 more lines...)
Existing test failures 1
Status Test Failing since Duration 
Classname: java.lang.AssertionError
Message: Exception importing paefile 'examples/AlphaFold/AF-Q5VSL9-F1-predicted_aligned_error_v4_cmp.json'
Stacktrace:
java.lang.AssertionError: Exception importing paefile 'examples/AlphaFold/AF-Q5VSL9-F1-predicted_aligned_error_v4_cmp.json'
	at org.testng.Assert.fail(Assert.java:83)
	at jalview.ws.dbsources.EBIAlphaFoldTest.__CLR4_4_1rvd1wm3rrg(EBIAlphaFoldTest.java:96)
	at jalview.ws.dbsources.EBIAlphaFoldTest.checkImportPAEToStructure(EBIAlphaFoldTest.java:67)
	at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
(56 more lines...)