Build #4

Build: #4 failed Changes by Gitlab User

Build result summary

Details

Completed
Duration
9 minutes
Labels
None
Agent
Default Agent
Revision
a08ed3ba56eb5141e8ca3d50ccabe79d8dc95572 a08ed3ba56eb5141e8ca3d50ccabe79d8dc95572
Total tests
1926

Responsible

Code commits

Author Commit Message Commit date
Gitlab User Gitlab User a08ed3ba56eb5141e8ca3d50ccabe79d8dc95572 a08ed3ba56eb5141e8ca3d50ccabe79d8dc95572 JAL-4410 testData for failing test
Gitlab User Gitlab User 83626479abbe738162c3ee7c64ed0563ef3a7af6 83626479abbe738162c3ee7c64ed0563ef3a7af6 JAL-4410 initial WIP creating maps from many seuqences to one PAE with failing test
Gitlab User Gitlab User 76e28b93406723e0ead4a3d9646b2f9f05913e37 76e28b93406723e0ead4a3d9646b2f9f05913e37 Merge branch 'development/Release_2_11_5_Branch' into patch/JAL-4410_multimers_from_3dbeacons
Gitlab User Gitlab User 2a40a889270803a56cfcf63b8fa3c767662d0a06 m 2a40a889270803a56cfcf63b8fa3c767662d0a06 JAL-4672 format release notes
Gitlab User Gitlab User fd8d28895d1f0f2d449706b858b3f2d04f2fb351 m fd8d28895d1f0f2d449706b858b3f2d04f2fb351 JAL-467 highlight position selected in the annotation row as well as the ruler

14 more changes...

Tests

New test failures 1
Status Test View job Duration
Collapse Failed EBIAlphaFoldTest testImportPAEAndStructureForMultiChainSeqs History
Clover and Tests < 1 sec 
Classname: java.lang.Error
Message: Couln't create a mapping for this matrix.
Stacktrace:
java.lang.Error: Couln't create a mapping for this matrix.
	at jalview.ws.datamodel.alphafold.MappableContactMatrix.liftOver(MappableContactMatrix.java:189)
	at jalview.ws.datamodel.alphafold.MappableContactMatrix.liftOver(MappableContactMatrix.java:38)
	at mc_view.PDBChain.transferResidueAnnotation(PDBChain.java:715)
	at jalview.structure.StructureSelectionManager.getNWMappings(StructureSelectionManager.java:1014)
(45 more lines...)
Existing test failures 1
Status Test Failing since View job Duration 
Classname: java.lang.AssertionError
Message: Exception importing paefile 'examples/AlphaFold/AF-Q5VSL9-F1-predicted_aligned_error_v4_cmp.json'
Stacktrace:
java.lang.AssertionError: Exception importing paefile 'examples/AlphaFold/AF-Q5VSL9-F1-predicted_aligned_error_v4_cmp.json'
	at org.testng.Assert.fail(Assert.java:83)
	at jalview.ws.dbsources.EBIAlphaFoldTest.__CLR4_4_1rvd1wm3rrg(EBIAlphaFoldTest.java:96)
	at jalview.ws.dbsources.EBIAlphaFoldTest.checkImportPAEToStructure(EBIAlphaFoldTest.java:67)
	at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
(56 more lines...)
Fixed tests 1
Status Test Failing since View job Duration
Successful EBIAlphaFoldTest checkImportPAEForStructure(examples/AlphaFold/AF-0000000203848083-model_v1.cif, examples/AlphaFold/AF-0000000203848083-predicted_aligned_error_v1.json) History
Clover and Tests 1 sec

JIRA issues

IssueDescriptionStatus
4 more issues…
Unknown Issue TypeJAL-467Could not obtain issue details from JIRA
Unknown Issue TypeJAL-3128Could not obtain issue details from JIRA
Unknown Issue TypeJAL-3250Could not obtain issue details from JIRA
Unknown Issue TypeJAL-3994Could not obtain issue details from JIRA
Unknown Issue TypeJAL-4410Could not obtain issue details from JIRA