Build #4

Build: #4 failed

Job: Clover and Tests failed

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Code commits

Jalview Gitlab

  • Gitlab User

    Gitlab User a08ed3ba56eb5141e8ca3d50ccabe79d8dc95572

    JAL-4410 testData for failing test

    • examples/AlphaFold/AF-0000000203848083-uniprot.fa (version a08ed3ba56eb5141e8ca3d50ccabe79d8dc95572)
  • Gitlab User

    Gitlab User 83626479abbe738162c3ee7c64ed0563ef3a7af6

    JAL-4410 initial WIP creating maps from many seuqences to one PAE with failing test

    • test/jalview/ws/dbsources/EBIAlphaFoldTest.java (version 83626479abbe738162c3ee7c64ed0563ef3a7af6)
    • src/jalview/ws/dbsources/EBIAlfaFold.java (version 83626479abbe738162c3ee7c64ed0563ef3a7af6)
    • src/jalview/ws/datamodel/alphafold/PAEContactMatrix.java (version 83626479abbe738162c3ee7c64ed0563ef3a7af6)
    • src/jalview/ws/datamodel/alphafold/MappableContactMatrix.java (version 83626479abbe738162c3ee7c64ed0563ef3a7af6)
  • Gitlab User

    Gitlab User 76e28b93406723e0ead4a3d9646b2f9f05913e37

    Merge branch 'development/Release_2_11_5_Branch' into patch/JAL-4410_multimers_from_3dbeacons

  • Gitlab User

    Gitlab User 2a40a889270803a56cfcf63b8fa3c767662d0a06 m

    JAL-4672 format release notes

    • help/markdown/releases/release-2_11_5_2.md (version 2a40a889270803a56cfcf63b8fa3c767662d0a06)
  • Gitlab User

    Gitlab User fd8d28895d1f0f2d449706b858b3f2d04f2fb351 m

    JAL-467 highlight position selected in the annotation row as well as the ruler

    • src/jalview/gui/AnnotationPanel.java (version fd8d28895d1f0f2d449706b858b3f2d04f2fb351)
  • Gitlab User

    Gitlab User 7edfe2bf647af9008e73e6f5b0095616c91fe667 m

    JAL-4672 2.11.5.2 patch release JAL-3128,JAL-3250,JAL-3994,JAL-4587,JAL-467,JAL-4670,JAL-4672

    • help/markdown/releases/release-2_11_5_2.md (version 7edfe2bf647af9008e73e6f5b0095616c91fe667)
    • RELEASE (version 7edfe2bf647af9008e73e6f5b0095616c91fe667)
  • Gitlab User

    Gitlab User 8a318c7fd8ba001aac077ede1693f4f0e43bec0a m

    Merge branch 'patch/JAL-4672_for_2115_pdbe_query' into development/Release_2_11_5_Branch

  • Gitlab User

    Gitlab User 1f9d5fd62cf017895d013d4438b03351b7cd7166 m

    JAL-467 select the column if no other action possible on the annotation row in response to a click

    • src/jalview/gui/AnnotationPanel.java (version 1f9d5fd62cf017895d013d4438b03351b7cd7166)
  • Gitlab User

    Gitlab User aeb705d2ddc8a8ae1a6020dcd141a5c82572e4cd m

    JAL-4587 show group associated annotation coloured like its idColour and in grey if selected

    • src/jalview/gui/AnnotationLabels.java (version aeb705d2ddc8a8ae1a6020dcd141a5c82572e4cd)
  • Gitlab User

    Gitlab User b12d657a33dd19d5e03057bcc6e6bb5bf755504a m

    JAL-4670 fix

    • src/jalview/gui/SliderPanel.java (version b12d657a33dd19d5e03057bcc6e6bb5bf755504a)
  • Gitlab User

    Gitlab User 74a5b68d80eadf2817aaddab97d2fc51772d62be m

    JAL-3128 add groups to alignment so they appear in same order as tree

    • src/jalview/gui/TreeCanvas.java (version 74a5b68d80eadf2817aaddab97d2fc51772d62be)
  • Gitlab User

    Gitlab User 388267f2d5720f07ddda250fdc951e908d08a89d m

    JAL-3994 fix - follow group (no test yet)

    • src/jalview/renderer/AnnotationRenderer.java (version 388267f2d5720f07ddda250fdc951e908d08a89d)
  • Gitlab User

    Gitlab User 48a67d287aee111ed56025e9ca3eed58322ac78b

    JAL-467 select the column if no other action possible on the annotation row in response to a click

    • src/jalview/gui/AnnotationPanel.java (version 48a67d287aee111ed56025e9ca3eed58322ac78b)
  • Gitlab User

    Gitlab User e749c59a7327e0637d327fd00b9e9ff1e05e43fe

    JAL-4587 show group associated annotation coloured like its idColour and in grey if selected

    • src/jalview/gui/AnnotationLabels.java (version e749c59a7327e0637d327fd00b9e9ff1e05e43fe)
  • Gitlab User

    Gitlab User 240bf76ec6a9e436991901105b77b935a015ec91

    JAL-4670 fix

    • src/jalview/gui/SliderPanel.java (version 240bf76ec6a9e436991901105b77b935a015ec91)
  • Gitlab User

    Gitlab User 5306cec49146955c0085fbba59d7334cbbf6a172

    JAL-3128 add groups to alignment so they appear in same order as tree

    • src/jalview/gui/TreeCanvas.java (version 5306cec49146955c0085fbba59d7334cbbf6a172)
  • Gitlab User

    Gitlab User 714325738eb23e0b3d25557b2c54938932ae5ec7

    JAL-3994 fix - follow group (no test yet)

    • src/jalview/renderer/AnnotationRenderer.java (version 714325738eb23e0b3d25557b2c54938932ae5ec7)
  • Gitlab User

    Gitlab User 64c11c6d7e9ebb3ec3cad9d64a7cd43d55d0fb25

    JAL-4686 earlier refinement made sure that characters rendered in white in the logo annotation row were changed to grey so they remained visible. White is preferable when wanting to 'fade out' less conserved symbols.

    • src/jalview/renderer/AnnotationRenderer.java (version 64c11c6d7e9ebb3ec3cad9d64a7cd43d55d0fb25)
  • Gitlab User

    Gitlab User 7c71d6197bc5cf504f822308d34eb679e768d704

    JAL-4410 WIP support multimeric PAE import

    • test/jalview/ws/dbsources/EBIAlphaFoldTest.java (version 7c71d6197bc5cf504f822308d34eb679e768d704)
    • src/jalview/ws/datamodel/alphafold/PAEContactMatrix.java (version 7c71d6197bc5cf504f822308d34eb679e768d704)
    • src/jalview/ws/datamodel/alphafold/MappableContactMatrix.java (version 7c71d6197bc5cf504f822308d34eb679e768d704)