Create installers for Jalview Develop edition
Build: #11 was successful
Job: Default Job was successful
Build log
The build generated 371 lines of output. Download or view full build log
| 20-Feb-2023 12:45:06 | Build Jalview Builds - Getdown DEVELOP Installers - Default Job #11 (JB-GDI-JOB1-11) started building on agent Default Agent |
| 20-Feb-2023 12:45:06 | |
| 20-Feb-2023 12:45:06 | Build working directory is /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDI-JOB1 |
| 20-Feb-2023 12:45:06 | Executing build Jalview Builds - Getdown DEVELOP Installers - Default Job #11 (JB-GDI-JOB1-11) |
| 20-Feb-2023 12:45:06 | Starting task 'Checkout Default Repository' of type 'com.atlassian.bamboo.plugins.vcs:task.vcs.checkout' |
| 20-Feb-2023 12:45:06 | Checking out into /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDI-JOB1 |
| 20-Feb-2023 12:45:06 | Updating source code to revision: e6e897ddf845d4e79ff5e6c7afddf66766c7d31d |
| 20-Feb-2023 12:45:07 | Fetching 'refs/heads/develop' from 'http://source.jalview.org/git/jalview.git'. |
| 20-Feb-2023 12:45:07 | Checking out revision e6e897ddf845d4e79ff5e6c7afddf66766c7d31d. |
| 20-Feb-2023 12:45:11 | From file:///srv/bamboo/bamboo-home/xml-data/build-dir/_git-repositories-cache/2597b807d50ab756c763be1d374b09c84289a164 |
| 20-Feb-2023 12:45:11 | * [new branch] bug/JAL-360_JAL-3984_F2_stops_working_after_some_dialogs -> origin/bug/JAL-360_JAL-3984_F2_stops_working_after_some_dialogs |
| 20-Feb-2023 12:45:11 | * [new branch] bug/JAL-4118_Fix_QuitHandlerTest -> origin/bug/JAL-4118_Fix_QuitHandlerTest |
| 20-Feb-2023 12:45:11 | * [new branch] bug/JAL-4125_flatlaf_quithandler_warning_doesnt_display_properly -> origin/bug/JAL-4125_flatlaf_quithandler_warning_doesnt_display_properly |
| 20-Feb-2023 12:45:11 | * [new branch] bug/JAL-4128_resizing_overview_with_solid_drags_causes_exception -> origin/bug/JAL-4128_resizing_overview_with_solid_drags_causes_exception |
| 20-Feb-2023 12:45:11 | cd7f028..e6e897d develop -> origin/develop |
| 20-Feb-2023 12:45:11 | * [new branch] development/JAL-3878_ws_overhaul_3_merged_with_2_12_Merged -> origin/development/JAL-3878_ws_overhaul_3_merged_with_2_12_Merged |
| 20-Feb-2023 12:45:11 | * [new branch] development/Release_2_12_Branch -> origin/development/Release_2_12_Branch |
| 20-Feb-2023 12:45:11 | * [new branch] development/Release_2_12_Branch_JAL-4102_21126_merge -> origin/development/Release_2_12_Branch_JAL-4102_21126_merge |
| 20-Feb-2023 12:45:11 | 5d49f77..d6eab72 feature/JAL-1713_overviewInProject -> origin/feature/JAL-1713_overviewInProject |
| 20-Feb-2023 12:45:11 | a08e984..01f8ff4 features/r2_11_2_alphafold/JAL-629 -> origin/features/r2_11_2_alphafold/JAL-629 |
| 20-Feb-2023 12:45:11 | * [new branch] mmw/JAL-3878-ws-overhaul -> origin/mmw/JAL-3878-ws-overhaul |
| 20-Feb-2023 12:45:11 | * [new branch] mmw/JAL-3878_ws-overhaul-3 -> origin/mmw/JAL-3878_ws-overhaul-3 |
| 20-Feb-2023 12:45:11 | * [new branch] mmw/JAL-3954_ebi_phmmer -> origin/mmw/JAL-3954_ebi_phmmer |
| 20-Feb-2023 12:45:11 | * [new branch] mmw/Release_2_12_ws_merge -> origin/mmw/Release_2_12_ws_merge |
| 20-Feb-2023 12:45:11 | 7723baa..09be4c7 new_feature/JAL-4019_ambiguous_base_colourscheme -> origin/new_feature/JAL-4019_ambiguous_base_colourscheme |
| 20-Feb-2023 12:45:11 | * [new branch] patch/JAL-4114_updated_3dbeacons_api -> origin/patch/JAL-4114_updated_3dbeacons_api |
| 20-Feb-2023 12:45:11 | * [new branch] patch/JAL-4119_sifts_ftp_split -> origin/patch/JAL-4119_sifts_ftp_split |
| 20-Feb-2023 12:45:11 | * [new branch] patch/JAL-840_clustalx_docs_fix -> origin/patch/JAL-840_clustalx_docs_fix |
| 20-Feb-2023 12:45:11 | e9afa3f..5faac11 patch/Release_2_11_2_6_Branch -> origin/patch/Release_2_11_2_6_Branch |
| 20-Feb-2023 12:45:11 | 519295f..0419deb releases/Release_2_11_2_Branch -> origin/releases/Release_2_11_2_Branch |
| 20-Feb-2023 12:45:11 | * [new branch] spikes/JAL-4113_javafx_with_Jalview_MSA -> origin/spikes/JAL-4113_javafx_with_Jalview_MSA |
| 20-Feb-2023 12:45:11 | * [new tag] Release_2_11_2_6 -> Release_2_11_2_6 |
| 20-Feb-2023 12:45:12 | Switched to branch 'develop' |
| 20-Feb-2023 12:45:12 | Your branch is behind 'origin/develop' by 435 commits, and can be fast-forwarded. |
| 20-Feb-2023 12:45:12 | (use "git pull" to update your local branch) |
| 20-Feb-2023 12:45:13 | HEAD is now at e6e897d JAL-4128 Catch RasterFormatException caused whilst resizing Overview window, recalculate OverviewDimensions od instead. Prevent negative OverviewDimensions being set to avoid problem with vertically fully shrunk overview window 'losing' the alignement canvas. |
| 20-Feb-2023 12:45:13 | Updated source code to revision: e6e897ddf845d4e79ff5e6c7afddf66766c7d31d |
| 20-Feb-2023 12:45:13 | Finished task 'Checkout Default Repository' with result: Success |
| 20-Feb-2023 12:45:13 | Running pre-build action: VCS Version Collector |
| 20-Feb-2023 12:45:13 | Running pre-build action: Artifactory Release Staging |
| 20-Feb-2023 12:45:13 | Substituting variable: ${bamboo.planKey} with JB-GDI |
| 20-Feb-2023 12:45:13 | Starting task 'Jalview DEVELOP distribution for Java 11' of type 'org.jfrog.bamboo.bamboo-artifactory-plugin:artifactoryGradleTask' |
| 20-Feb-2023 12:45:13 | Bamboo Artifactory Plugin version: 2.6.2 |
| 20-Feb-2023 12:45:13 | Beginning to execute external process for build 'Jalview Builds - Getdown DEVELOP Installers - Default Job #11 (JB-GDI-JOB1-11)' ... running command line: /home/bamboo/buildtools/gradle/bin/gradle -x test -PCHANNEL=DEVELOP -PJAVA_VERSION=11 -Pbamboo_planKey=JB-GDI clean shadowJar installers ... in: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDI-JOB1 ... using extra environment variables: bamboo_planRepository_1_branch=develop bamboo_repository_24707249_git_username= bamboo_capability_system_builder_maven_Artifactory_Maven_3=/usr CATALINA_PID=/home/bamboo/latest/work/bamboo.pid bamboo_planRepository_1_branchDisplayName=develop bamboo_repository_revision_number=e6e897ddf845d4e79ff5e6c7afddf66766c7d31d bamboo_resultsUrl=https://builds.jalview.org/browse/JB-GDI-JOB1-11 JAVA_OPTS=-Xms512m -Xmx1024m -Dbamboo.home=/srv/bamboo/bamboo-home -Djdk.tls.ephemeralDHKeySize=2048 bamboo_build_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDI-JOB1 bamboo_planRepository_1_name=Jalview Git bamboo_buildKey=JB-GDI-JOB1 bamboo_repository_24707249_git_repositoryUrl=http://source.jalview.org/git/jalview.git bamboo_shortPlanName=Getdown DEVELOP Installers bamboo_planRepository_name=Jalview Git LOGNAME=bamboo bamboo_buildNumber=11 PWD=/ bamboo_capability_system_builder_command_Eclipse_2019_09=/home/bamboo/buildtools/eclipse/jee-2019-09/eclipse/eclipse bamboo_shortJobName=Default Job bamboo_buildResultsUrl=https://builds.jalview.org/browse/JB-GDI-JOB1-11 bamboo_planRepository_repositoryUrl=http://source.jalview.org/git/jalview.git SHELL=/bin/bash bamboo_agentId=196609 bamboo_planName=Jalview Builds - Getdown DEVELOP Installers bamboo_shortPlanKey=GDI bamboo_shortJobKey=JOB1 bamboo_capability_system_jdk_OpenJDK_11=/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk bamboo_planRepository_revision=e6e897ddf845d4e79ff5e6c7afddf66766c7d31d bamboo_buildTimeStamp=2023-02-20T12:44:45.832Z bamboo_repository_previous_revision_number=11346f873e4ecb2d191499fd1d52b8de07a65bf3 bamboo_planRepository_previousRevision=11346f873e4ecb2d191499fd1d52b8de07a65bf3 bamboo_repository_git_branch=develop bamboo_buildResultKey=JB-GDI-JOB1-11 bamboo_repository_branch_name=develop bamboo_buildPlanName=Jalview Builds - Getdown DEVELOP Installers - Default Job bamboo_capability_system_builder_ant_j11_Ant=/home/bamboo/buildtools/j11/ant-j11 bamboo_planRepository_1_revision=e6e897ddf845d4e79ff5e6c7afddf66766c7d31d SHLVL=1 bamboo_capability_system_builder_ant_x11_Ant=/home/bamboo/buildtools/x11-ant bamboo_repository_24707249_name=Jalview Git bamboo_repository_name=Jalview Git JAVA_HOME=/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/ bamboo_dependenciesDisabled=false LANG=en_GB.UTF-8 bamboo_buildFailed=false bamboo_capability_system_jdk_OpenJDK_8=/home/bamboo/buildtools/jdk/jdk-8-linux-x64/jdk bamboo_repository_24707249_revision_number=e6e897ddf845d4e79ff5e6c7afddf66766c7d31d bamboo_planRepository_branch=develop bamboo_agentWorkingDirectory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609 bamboo_capability_system_git_executable=/bin/git bamboo_repository_git_username= bamboo_planRepository_1_previousRevision=11346f873e4ecb2d191499fd1d52b8de07a65bf3 bamboo_planRepository_branchDisplayName=develop bamboo_planRepository_1_type=gitv2 bamboo_planRepository_branchName=develop _=/usr/bin/java bamboo_capability_system_builder_ant_j11_x11_Ant=/home/bamboo/buildtools/j11/x11-ant-j11 bamboo_capability_system_builderivy_Ivy=/usr bamboo_plan_storageTag=plan-24510817 bamboo_capability_system_builder_gradle_Gradle=/home/bamboo/buildtools/gradle bamboo_hg_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_hg-repositories-cache bamboo_planRepository_1_username= bamboo_planRepository_type=gitv2 USER=bamboo bamboo_git_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_git-repositories-cache bamboo_ManualBuildTriggerReason_userName=Soares bamboo_repository_git_repositoryUrl=http://source.jalview.org/git/jalview.git bamboo_repository_24707249_previous_revision_number=11346f873e4ecb2d191499fd1d52b8de07a65bf3 bamboo_repository_24707249_branch_name=develop bamboo_capability_system_builder_ant_Ant=/usr/share/ant bamboo_capability_system_builder_mvn3_Maven_3=/usr/share/maven bamboo_tmp_directory=/srv/bamboo/bamboo-home/temp bamboo_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDI-JOB1 bamboo_planKey=JB-GDI bamboo_planRepository_1_repositoryUrl=http://source.jalview.org/git/jalview.git bamboo_planRepository_username= bamboo_repository_24707249_git_branch=develop HOME=/home/bamboo bamboo_planRepository_1_branchName=develop PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin |
| 20-Feb-2023 12:45:16 | |
| 20-Feb-2023 12:45:16 | > Configure project : |
| 20-Feb-2023 12:45:16 | Using properties from file './utils/channels/develop/channel_gradle.properties' |
| 20-Feb-2023 12:45:16 | JALVIEW_VERSION is set to '2.11.3.0' |
| 20-Feb-2023 12:45:16 | HEADLESS BUILD |
| 20-Feb-2023 12:45:16 | J2S ENABLED |
| 20-Feb-2023 12:45:16 | Using a DEVELOP profile. |
| 20-Feb-2023 12:45:16 | eclipseDir exists |
| 20-Feb-2023 12:45:16 | |
| 20-Feb-2023 12:45:16 | > Task :clean |
| 20-Feb-2023 12:45:16 | > Task :cleanPackageDir |
| 20-Feb-2023 12:45:16 | > Task :cleanInstallersDataFiles |
| 20-Feb-2023 12:45:18 | > Task :copyHelp |
| 20-Feb-2023 12:45:20 | > Task :buildIndices |
| 20-Feb-2023 12:45:20 | > Task :copyResources |
| 20-Feb-2023 12:45:20 | > Task :copyChannelResources |
| 20-Feb-2023 12:45:20 | |
| 20-Feb-2023 12:45:20 | > Task :createBuildProperties |
| 20-Feb-2023 12:45:20 | Execution optimizations have been disabled for task ':createBuildProperties' to ensure correctness due to the following reasons: |
| 20-Feb-2023 12:45:20 | - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDI-JOB1/build/resources/resources_build'. Reason: Task ':createBuildProperties' uses this output of task ':copyChannelResources' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem. |
| 20-Feb-2023 12:45:20 | |
| 20-Feb-2023 12:45:20 | > Task :buildResources |
| 20-Feb-2023 12:45:21 | > Task :copyDocs |
| 20-Feb-2023 12:45:21 | |
| 20-Feb-2023 12:45:21 | > Task :convertMdFiles |
| 20-Feb-2023 12:45:21 | Creating /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDI-JOB1/build/resources/doc_build/doc/README-DMG_creation.html |
| 20-Feb-2023 12:45:21 | Creating /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDI-JOB1/build/resources/doc_build/doc/releaseprocess.html |
| 20-Feb-2023 12:45:21 | Creating /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDI-JOB1/build/resources/doc_build/doc/README-DMG_background_image_creation.html |
| 20-Feb-2023 12:45:21 | Creating /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDI-JOB1/build/resources/doc_build/doc/building.html |
| 20-Feb-2023 12:45:21 | |
| 20-Feb-2023 12:45:21 | > Task :releasesTemplates |
| 20-Feb-2023 12:45:21 | Execution optimizations have been disabled for task ':releasesTemplates' to ensure correctness due to the following reasons: |
| 20-Feb-2023 12:45:21 | - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDI-JOB1/build/resources/help_build/help/html/releases.html'. Reason: Task ':buildIndices' uses this output of task ':releasesTemplates' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem. |
| 20-Feb-2023 12:45:21 | - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDI-JOB1/build/resources/help_build/help/html/whatsNew.html'. Reason: Task ':buildIndices' uses this output of task ':releasesTemplates' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem. |
| 20-Feb-2023 12:45:21 | |
| 20-Feb-2023 12:45:21 | > Task :prepare |
| 20-Feb-2023 12:45:23 | |
| 20-Feb-2023 12:45:23 | > Task :compileJava |
| 20-Feb-2023 12:45:23 | Setting target compatibility to 11 |
| 20-Feb-2023 12:45:32 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDI-JOB1/src/jalview/analysis/Finder.java:609: warning: non-varargs call of varargs method with inexact argument type for last parameter; |
| 20-Feb-2023 12:45:32 | allFeatures = sf.getAllFeatures(null); |
| 20-Feb-2023 12:45:32 | ^ |
| 20-Feb-2023 12:45:32 | cast to String for a varargs call |
| 20-Feb-2023 12:45:32 | cast to String[] for a non-varargs call and to suppress this warning |
| 20-Feb-2023 12:45:33 | Note: Some input files use or override a deprecated API. |
| 20-Feb-2023 12:45:33 | Note: Recompile with -Xlint:deprecation for details. |
| 20-Feb-2023 12:45:33 | Note: Some input files use unchecked or unsafe operations. |
| 20-Feb-2023 12:45:33 | Note: Recompile with -Xlint:unchecked for details. |
| 20-Feb-2023 12:45:33 | 1 warning |
| 20-Feb-2023 12:45:33 | |
| 20-Feb-2023 12:45:33 | > Task :processResources |
| 20-Feb-2023 12:45:33 | Execution optimizations have been disabled for task ':processResources' to ensure correctness due to the following reasons: |
| 20-Feb-2023 12:45:33 | - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDI-JOB1/build/resources/doc_build'. Reason: Task ':processResources' uses this output of task ':convertMdFiles' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem. |
| 20-Feb-2023 12:45:33 | - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDI-JOB1/build/resources/doc_build'. Reason: Task ':processResources' uses this output of task ':copyDocs' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem. |
| 20-Feb-2023 12:45:33 | - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDI-JOB1/build/resources/help_build'. Reason: Task ':processResources' uses this output of task ':buildIndices' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem. |
| 20-Feb-2023 12:45:33 | - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDI-JOB1/build/resources/help_build'. Reason: Task ':processResources' uses this output of task ':copyHelp' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem. |
| 20-Feb-2023 12:45:33 | - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDI-JOB1/build/resources/help_build'. Reason: Task ':processResources' uses this output of task ':releasesTemplates' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem. |
| 20-Feb-2023 12:45:33 | - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDI-JOB1/build/resources/resources_build'. Reason: Task ':processResources' uses this output of task ':copyChannelResources' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem. |
| 20-Feb-2023 12:45:33 | - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDI-JOB1/build/resources/resources_build'. Reason: Task ':processResources' uses this output of task ':copyResources' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem. |
| 20-Feb-2023 12:45:33 | - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDI-JOB1/build/resources/resources_build'. Reason: Task ':processResources' uses this output of task ':createBuildProperties' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem. |
| 20-Feb-2023 12:45:33 | |
| 20-Feb-2023 12:45:33 | > Task :classes |
| 20-Feb-2023 12:45:35 | |
| 20-Feb-2023 12:45:35 | > Task :compileLinkCheck |
| 20-Feb-2023 12:45:35 | Execution optimizations have been disabled for task ':compileLinkCheck' to ensure correctness due to the following reasons: |
| 20-Feb-2023 12:45:35 | - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDI-JOB1/utils'. Reason: Task ':convertMdFiles' uses this output of task ':compileLinkCheck' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem. |
| 20-Feb-2023 12:45:35 | - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDI-JOB1/utils'. Reason: Task ':copyChannelResources' uses this output of task ':compileLinkCheck' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem. |
| 20-Feb-2023 12:45:35 | |
| 20-Feb-2023 12:45:35 | > Task :linkCheck |
| 20-Feb-2023 12:45:35 | Checking help file links |
| 20-Feb-2023 12:45:35 | |
| 20-Feb-2023 12:45:35 | Results: |
| 20-Feb-2023 12:45:35 | 148 distinct help targets |
| 20-Feb-2023 12:45:35 | 148 help mappings |
| 20-Feb-2023 12:45:35 | 0 invalid targets |
| 20-Feb-2023 12:45:35 | 26 unused targets |
| 20-Feb-2023 12:45:35 | uniprotfetcher: html/features/uniprotsequencefetcher.html |
| 20-Feb-2023 12:45:35 | overviewprefs: html/features/preferences.html#overview |
| 20-Feb-2023 12:45:35 | cdnafeatures: html/features/codingfeatures.html |
| 20-Feb-2023 12:45:35 | ensemblfetch: html/features/ensemblsequencefetcher.html |
| 20-Feb-2023 12:45:35 | io.modellerpir: html/io/modellerpir.html |
| 20-Feb-2023 12:45:35 | pdbmcviewer: html/features/pdbviewer.html |
| 20-Feb-2023 12:45:35 | groovy.colours: html/features/groovy.html#groovyColours |
| 20-Feb-2023 12:45:35 | seqmappings: html/features/seqmappings.html |
| 20-Feb-2023 12:45:35 | uniprotfts: html/features/uniprotsequencefetcher.html#uniprotfts |
| 20-Feb-2023 12:45:35 | splitframe.mirrorfonts: html/features/splitView.html#mirror |
| 20-Feb-2023 12:45:35 | subtMatrices.pam250: html/calculations/scorematrices.html#pam250 |
| 20-Feb-2023 12:45:35 | search: html/features/search.html |
| 20-Feb-2023 12:45:35 | viewingpdbs.reps: html/features/viewingpdbs.html#viewreps |
| 20-Feb-2023 12:45:35 | alformats: html/io/fileformats.html |
| 20-Feb-2023 12:45:35 | strucprefs: html/features/preferences.html#structure |
| 20-Feb-2023 12:45:35 | siftsmapping: html/features/siftsmapping.html |
| 20-Feb-2023 12:45:35 | chimera.annotxfer: html/features/chimera.html#annotxfer |
| 20-Feb-2023 12:45:35 | pdbfts: html/features/pdbsequencefetcher.html#pdbfts |
| 20-Feb-2023 12:45:35 | newkeys: html/features/newkeystrokes.html |
| 20-Feb-2023 12:45:35 | importvcf.attribs: html/features/importvcf.html#attribs |
| 20-Feb-2023 12:45:35 | seqfeatures.settings.selcols: html/features/featuresettings.html#selectbyfeature |
| 20-Feb-2023 12:45:35 | jalarchive: html/features/jalarchive.html |
| 20-Feb-2023 12:45:35 | newsreader: html/webServices/newsreader.html |
| 20-Feb-2023 12:45:35 | popMenuAddref: html/menus/popupMenu.html#addrefannot |
| 20-Feb-2023 12:45:35 | splitframe.virtualfeats: html/features/splitView.html#virtualfeats |
| 20-Feb-2023 12:45:35 | overview: html/features/overview.html |
| 20-Feb-2023 12:45:35 | 0 invalid map urls |
| 20-Feb-2023 12:45:35 | 0 invalid image attributes |
| 20-Feb-2023 12:45:35 | 403 internal href links (79 with anchors) |
| 20-Feb-2023 12:45:35 | 0 invalid internal href links |
| 20-Feb-2023 12:45:35 | 0 invalid internal anchor links |
| 20-Feb-2023 12:45:35 | 106 external href links |
| 20-Feb-2023 12:45:35 | External links not verified as internet not available |
| 20-Feb-2023 12:45:35 | *** Success *** |
| 20-Feb-2023 12:45:36 | |
| 20-Feb-2023 12:45:36 | > Task :jar |
| 20-Feb-2023 12:45:37 | > Task :syncJars |
| 20-Feb-2023 12:45:37 | > Task :makeDist |
| 20-Feb-2023 12:45:43 | > Task :shadowJar |
| 20-Feb-2023 12:45:44 | |
| 20-Feb-2023 12:45:44 | > Task :copyInstall4jTemplate |
| 20-Feb-2023 12:45:44 | Execution optimizations have been disabled for task ':copyInstall4jTemplate' to ensure correctness due to the following reasons: |
| 20-Feb-2023 12:45:44 | - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDI-JOB1/utils/install4j/file_associations_auto-install4j10.xml'. Reason: Task ':copyInstall4jTemplate' uses this output of task ':compileLinkCheck' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem. |
| 20-Feb-2023 12:45:44 | - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDI-JOB1/utils/install4j/install4j10_template.install4j'. Reason: Task ':copyInstall4jTemplate' uses this output of task ':compileLinkCheck' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem. |
| 20-Feb-2023 12:45:44 | - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDI-JOB1/utils/install4j/jalview-install4j-conf.install4j'. Reason: Task ':compileLinkCheck' uses this output of task ':copyInstall4jTemplate' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem. |
| 20-Feb-2023 12:45:44 | - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDI-JOB1/utils/install4j/jalview-install4j-conf.install4j'. Reason: Task ':linkCheck' uses this output of task ':copyInstall4jTemplate' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem. |
| 20-Feb-2023 12:45:44 | |
| 20-Feb-2023 12:45:44 | > Task :getdownWebsite |
| 20-Feb-2023 12:45:45 | |
| 20-Feb-2023 12:45:45 | > Task :getdownDigest |
| 20-Feb-2023 12:45:45 | Generating digest file './build/website/docroot/getdown/develop/11/digest.txt'... |
| 20-Feb-2023 12:45:45 | Generating digest file './build/website/docroot/getdown/develop/11/digest2.txt'... |
| 20-Feb-2023 12:45:45 | |
| 20-Feb-2023 12:45:45 | > Task :getdown |
| 20-Feb-2023 12:45:45 | LIKELY RSYNC COMMAND: |
| 20-Feb-2023 12:45:45 | mkdir -p '/Volumes/jalview/docroot/getdown/develop/11/' |
| 20-Feb-2023 12:45:45 | rsync -avh --delete './build/website/docroot/getdown/develop/11/' '/Volumes/jalview/docroot/getdown/develop/11/' |
| 20-Feb-2023 12:45:45 | 2023/02/20 12:45:44:811 WARNING Starting without install4j classes |
| 20-Feb-2023 12:45:45 | 2023/02/20 12:45:45:245 WARNING Starting without install4j classes |
| 20-Feb-2023 12:45:47 | |
| 20-Feb-2023 12:45:47 | > Task :installerFiles |
| 20-Feb-2023 12:45:47 | Using projectFile /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDI-JOB1/utils/install4j/jalview-install4j-conf.install4j |
| 20-Feb-2023 12:45:49 | install4j version 10.0.3 (build 10052), built on 2022-09-29 |
| 20-Feb-2023 12:45:49 | Using Java 11.0.15 from /srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk |
| 20-Feb-2023 12:45:49 | Registered to |
| 20-Feb-2023 12:45:49 | |
| 20-Feb-2023 12:45:49 | Loading config file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDI-JOB1/utils/install4j/jalview-install4j-conf.install4j |
| 20-Feb-2023 12:45:50 | [WARNING] The version 10.0.3 of this install4j installation is lower than the version 10.0.4 of the IDE that saved the config file. |
| 20-Feb-2023 12:45:50 | Creating media file 'Windows x64 EXE Installer': |
| 20-Feb-2023 12:45:52 | Collecting files: |
| 20-Feb-2023 12:45:52 | Compiling launchers: |
| 20-Feb-2023 12:45:52 | Compiling launcher 'Jalview Launcher': |
| 20-Feb-2023 12:45:52 | Generating VM options file jalviewg.vmoptions. |
| 20-Feb-2023 12:45:52 | Creating media file: |
| 20-Feb-2023 12:45:52 | Using custom installer icon: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDI-JOB1/utils/install4j/../../utils/channels/develop/images/jalview_develop_logo.ico |
| 20-Feb-2023 12:45:55 | Zipping custom code & resources JAR file |
| 20-Feb-2023 12:45:55 | Identifying components |
| 20-Feb-2023 12:45:55 | Adding JRE (jre_11_windows_x64.tar.gz) |
| 20-Feb-2023 12:45:55 | Shrinking runtime |
| 20-Feb-2023 12:45:56 | |
| 20-Feb-2023 12:45:56 | Creating media file 'macOS x64 Disk Image': |
| 20-Feb-2023 12:45:56 | Collecting files: |
| 20-Feb-2023 12:45:56 | Compiling launchers: |
| 20-Feb-2023 12:45:56 | Compiling launcher 'Jalview Launcher': |
| 20-Feb-2023 12:45:57 | Generating VM options file vmoptions.txt. |
| 20-Feb-2023 12:45:57 | Creating media file: |
| 20-Feb-2023 12:45:57 | Zipping custom code & resources JAR file |
| 20-Feb-2023 12:45:57 | Shrinking runtime |
| 20-Feb-2023 12:45:58 | |
| 20-Feb-2023 12:45:58 | Creating media file 'macOS aarch64 Disk Image': |
| 20-Feb-2023 12:45:58 | Collecting files: |
| 20-Feb-2023 12:45:58 | Compiling launchers: |
| 20-Feb-2023 12:45:58 | Compiling launcher 'Jalview Launcher': |
| 20-Feb-2023 12:45:58 | Generating VM options file vmoptions.txt. |
| 20-Feb-2023 12:45:58 | Creating media file: |
| 20-Feb-2023 12:45:58 | Zipping custom code & resources JAR file |
| 20-Feb-2023 12:45:58 | Shrinking runtime |
| 20-Feb-2023 12:45:59 | |
| 20-Feb-2023 12:45:59 | Creating media file 'Linux x64 Shell Installer': |
| 20-Feb-2023 12:46:00 | Collecting files: |
| 20-Feb-2023 12:46:00 | Compiling launchers: |
| 20-Feb-2023 12:46:00 | Compiling launcher 'Jalview Launcher': |
| 20-Feb-2023 12:46:00 | Generating launcher script file |
| 20-Feb-2023 12:46:00 | Generating VM options file .i4j_external_735/jalviewg.vmoptions. |
| 20-Feb-2023 12:46:00 | Creating media file: |
| 20-Feb-2023 12:46:00 | Generating launcher script file |
| 20-Feb-2023 12:46:01 | Zipping custom code & resources JAR file |
| 20-Feb-2023 12:46:01 | Identifying components |
| 20-Feb-2023 12:46:01 | Adding JRE (jre_11_linux_x64.tar.gz) |
| 20-Feb-2023 12:46:01 | Shrinking runtime |
| 20-Feb-2023 12:46:01 | |
| 20-Feb-2023 12:46:01 | Creating media file 'Linux aarch64 Shell Installer': |
| 20-Feb-2023 12:46:03 | Collecting files: |
| 20-Feb-2023 12:46:03 | Compiling launchers: |
| 20-Feb-2023 12:46:03 | Compiling launcher 'Jalview Launcher': |
| 20-Feb-2023 12:46:03 | Generating launcher script file |
| 20-Feb-2023 12:46:03 | Generating VM options file .i4j_external_735/jalviewg.vmoptions. |
| 20-Feb-2023 12:46:03 | Creating media file: |
| 20-Feb-2023 12:46:03 | Generating launcher script file |
| 20-Feb-2023 12:46:03 | Zipping custom code & resources JAR file |
| 20-Feb-2023 12:46:03 | Identifying components |
| 20-Feb-2023 12:46:03 | Adding JRE (jre_11_linux_aarch64.tar.gz) |
| 20-Feb-2023 12:46:03 | Shrinking runtime |
| 20-Feb-2023 12:46:04 | |
| 20-Feb-2023 12:46:04 | Creating media file 'Unix .tar.gz Archive': |
| 20-Feb-2023 12:46:04 | Collecting files: |
| 20-Feb-2023 12:46:04 | Compiling launchers: |
| 20-Feb-2023 12:46:04 | Compiling launcher 'Jalview Launcher': |
| 20-Feb-2023 12:46:04 | Generating launcher script file |
| 20-Feb-2023 12:46:04 | Generating VM options file .i4j_external_735/jalviewg.vmoptions. |
| 20-Feb-2023 12:46:04 | Creating media file: |
| 20-Feb-2023 12:46:04 | Shrinking runtime |
| 20-Feb-2023 12:46:05 | |
| 20-Feb-2023 12:46:05 | Creating media file 'Unix Shell Installer': |
| 20-Feb-2023 12:46:05 | Collecting files: |
| 20-Feb-2023 12:46:05 | Compiling launchers: |
| 20-Feb-2023 12:46:05 | Compiling launcher 'Jalview Launcher': |
| 20-Feb-2023 12:46:05 | Generating launcher script file |
| 20-Feb-2023 12:46:05 | Generating VM options file .i4j_external_735/jalviewg.vmoptions. |
| 20-Feb-2023 12:46:05 | Creating media file: |
| 20-Feb-2023 12:46:05 | Generating launcher script file |
| 20-Feb-2023 12:46:05 | Zipping custom code & resources JAR file |
| 20-Feb-2023 12:46:05 | Identifying components |
| 20-Feb-2023 12:46:05 | Shrinking runtime |
| 20-Feb-2023 12:46:05 | |
| 20-Feb-2023 12:46:05 | Compressing 7 media files with 4 threads: |
| 20-Feb-2023 12:46:31 | |
| 20-Feb-2023 12:46:31 | Compressed media file 'Unix Shell Installer': |
| 20-Feb-2023 12:46:31 | Compressing files |
| 20-Feb-2023 12:46:31 | Applying LZMA compression |
| 20-Feb-2023 12:46:31 | Moving media files to media directory /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDI-JOB1/build/install4j/11 |
| 20-Feb-2023 12:46:31 | The name of the media file is jalview_develop-2_11_3_0-d20230220-unix-java_11.sh. |
| 20-Feb-2023 12:46:31 | The size of the media file is 43.4 MB |
| 20-Feb-2023 12:46:33 | |
| 20-Feb-2023 12:46:33 | Compressed media file 'Linux aarch64 Shell Installer': |
| 20-Feb-2023 12:46:33 | Compressing files |
| 20-Feb-2023 12:46:33 | Applying LZMA compression |
| 20-Feb-2023 12:46:33 | Moving media files to media directory /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDI-JOB1/build/install4j/11 |
| 20-Feb-2023 12:46:33 | The name of the media file is jalview_develop-2_11_3_0-d20230220-linux-aarch64-java_11.sh. |
| 20-Feb-2023 12:46:33 | The size of the media file is 82.2 MB |
| 20-Feb-2023 12:46:33 | |
| 20-Feb-2023 12:46:33 | Compressed media file 'Windows x64 EXE Installer': |
| 20-Feb-2023 12:46:33 | Compressing files |
| 20-Feb-2023 12:46:33 | Applying LZMA compression |
| 20-Feb-2023 12:46:33 | Moving media files to media directory /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDI-JOB1/build/install4j/11 |
| 20-Feb-2023 12:46:33 | The name of the media file is Jalview_Develop-2_11_3_0-d20230220-windows-x64-java_11.exe. |
| 20-Feb-2023 12:46:33 | The size of the media file is 85.6 MB |
| 20-Feb-2023 12:46:33 | |
| 20-Feb-2023 12:46:33 | Compressed media file 'Linux x64 Shell Installer': |
| 20-Feb-2023 12:46:33 | Compressing files |
| 20-Feb-2023 12:46:33 | Applying LZMA compression |
| 20-Feb-2023 12:46:33 | Moving media files to media directory /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDI-JOB1/build/install4j/11 |
| 20-Feb-2023 12:46:33 | The name of the media file is jalview_develop-2_11_3_0-d20230220-linux-x64-java_11.sh. |
| 20-Feb-2023 12:46:33 | The size of the media file is 83.7 MB |
| 20-Feb-2023 12:46:35 | |
| 20-Feb-2023 12:46:35 | Compressed media file 'Unix .tar.gz Archive': |
| 20-Feb-2023 12:46:35 | Moving media files to media directory /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDI-JOB1/build/install4j/11 |
| 20-Feb-2023 12:46:35 | The name of the media file is jalview_develop-2_11_3_0-d20230220-unix-java_11.tar.gz. |
| 20-Feb-2023 12:46:35 | The size of the media file is 44.2 MB |
| 20-Feb-2023 12:46:45 | |
| 20-Feb-2023 12:46:45 | Compressed media file 'macOS x64 Disk Image': |
| 20-Feb-2023 12:46:45 | Moving media files to media directory /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDI-JOB1/build/install4j/11 |
| 20-Feb-2023 12:46:45 | The name of the media file is Jalview_Develop-2_11_3_0-d20230220-macOS-x64-macos-java_11.dmg. |
| 20-Feb-2023 12:46:45 | The size of the media file is 83.0 MB |
| 20-Feb-2023 12:46:45 | |
| 20-Feb-2023 12:46:45 | Compressed media file 'macOS aarch64 Disk Image': |
| 20-Feb-2023 12:46:45 | Moving media files to media directory /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDI-JOB1/build/install4j/11 |
| 20-Feb-2023 12:46:45 | The name of the media file is Jalview_Develop-2_11_3_0-d20230220-macOS-aarch64-macos-java_11.dmg. |
| 20-Feb-2023 12:46:45 | The size of the media file is 81.9 MB |
| 20-Feb-2023 12:46:45 | Writing md5sums. |
| 20-Feb-2023 12:46:45 | Writing sha256sums. |
| 20-Feb-2023 12:46:45 | Writing updates.xml. |
| 20-Feb-2023 12:46:45 | Please upload updates.xml to https://www.jalview.org/install4j/updates.xml |
| 20-Feb-2023 12:46:45 | and upload all generated media files to the same directory. |
| 20-Feb-2023 12:46:45 | |
| 20-Feb-2023 12:46:46 | Build completed in 56.7 seconds at 2023-02-20 12:46:45 with 1 warning. |
| 20-Feb-2023 12:46:46 | Run the build in verbose mode to get instructions on how to suppress selected warnings. |
| 20-Feb-2023 12:46:47 | |
| 20-Feb-2023 12:46:47 | > Task :installers |
| 20-Feb-2023 12:46:47 | |
| 20-Feb-2023 12:46:47 | Deprecated Gradle features were used in this build, making it incompatible with Gradle 8.0. |
| 20-Feb-2023 12:46:47 | |
| 20-Feb-2023 12:46:47 | You can use '--warning-mode all' to show the individual deprecation warnings and determine if they come from your own scripts or plugins. |
| 20-Feb-2023 12:46:47 | |
| 20-Feb-2023 12:46:47 | See https://docs.gradle.org/7.4.2/userguide/command_line_interface.html#sec:command_line_warnings |
| 20-Feb-2023 12:46:47 | |
| 20-Feb-2023 12:46:47 | Execution optimizations have been disabled for 5 invalid unit(s) of work during this build to ensure correctness. |
| 20-Feb-2023 12:46:47 | Please consult deprecation warnings for more details. |
| 20-Feb-2023 12:46:47 | |
| 20-Feb-2023 12:46:47 | BUILD SUCCESSFUL in 1m 33s |
| 20-Feb-2023 12:46:47 | 23 actionable tasks: 23 executed |
| 20-Feb-2023 12:46:48 | Finished task 'Jalview DEVELOP distribution for Java 11' with result: Success |
| 20-Feb-2023 12:46:48 | Starting task 'Create tar of DEVELOP channel installers' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.script' |
| 20-Feb-2023 12:46:48 | Beginning to execute external process for build 'Jalview Builds - Getdown DEVELOP Installers - Default Job #11 (JB-GDI-JOB1-11)' ... running command line: /srv/bamboo/bamboo-home/temp/JB-GDI-JOB1-11-ScriptBuildTask-2210925595636211699.sh ... in: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDI-JOB1 ... using extra environment variables: bamboo_planRepository_1_branch=develop bamboo_repository_24707249_git_username= bamboo_capability_system_builder_maven_Artifactory_Maven_3=/usr bamboo_planRepository_1_branchDisplayName=develop bamboo_repository_revision_number=e6e897ddf845d4e79ff5e6c7afddf66766c7d31d bamboo_resultsUrl=https://builds.jalview.org/browse/JB-GDI-JOB1-11 bamboo_build_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDI-JOB1 bamboo_planRepository_1_name=Jalview Git bamboo_buildKey=JB-GDI-JOB1 bamboo_repository_24707249_git_repositoryUrl=http://source.jalview.org/git/jalview.git bamboo_shortPlanName=Getdown DEVELOP Installers bamboo_planRepository_name=Jalview Git bamboo_buildNumber=11 bamboo_capability_system_builder_command_Eclipse_2019_09=/home/bamboo/buildtools/eclipse/jee-2019-09/eclipse/eclipse bamboo_shortJobName=Default Job bamboo_buildResultsUrl=https://builds.jalview.org/browse/JB-GDI-JOB1-11 bamboo_planRepository_repositoryUrl=http://source.jalview.org/git/jalview.git bamboo_agentId=196609 bamboo_planName=Jalview Builds - Getdown DEVELOP Installers bamboo_shortPlanKey=GDI bamboo_shortJobKey=JOB1 bamboo_capability_system_jdk_OpenJDK_11=/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk bamboo_planRepository_revision=e6e897ddf845d4e79ff5e6c7afddf66766c7d31d bamboo_buildTimeStamp=2023-02-20T12:44:45.832Z bamboo_repository_previous_revision_number=11346f873e4ecb2d191499fd1d52b8de07a65bf3 bamboo_planRepository_previousRevision=11346f873e4ecb2d191499fd1d52b8de07a65bf3 bamboo_repository_git_branch=develop bamboo_buildResultKey=JB-GDI-JOB1-11 bamboo_repository_branch_name=develop bamboo_buildPlanName=Jalview Builds - Getdown DEVELOP Installers - Default Job bamboo_capability_system_builder_ant_j11_Ant=/home/bamboo/buildtools/j11/ant-j11 bamboo_planRepository_1_revision=e6e897ddf845d4e79ff5e6c7afddf66766c7d31d bamboo_capability_system_builder_ant_x11_Ant=/home/bamboo/buildtools/x11-ant bamboo_repository_24707249_name=Jalview Git bamboo_repository_name=Jalview Git bamboo_build_commandline_org_jfrog_bamboo_bamboo_artifactory_plugin_artifactoryGradleTask_2=/home/bamboo/buildtools/gradle/bin/gradle -x test -PCHANNEL=DEVELOP -PJAVA_VERSION=11 -Pbamboo_planKey=JB-GDI clean shadowJar installers bamboo_dependenciesDisabled=false bamboo_buildFailed=false bamboo_capability_system_jdk_OpenJDK_8=/home/bamboo/buildtools/jdk/jdk-8-linux-x64/jdk bamboo_repository_24707249_revision_number=e6e897ddf845d4e79ff5e6c7afddf66766c7d31d bamboo_planRepository_branch=develop bamboo_agentWorkingDirectory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609 bamboo_capability_system_git_executable=/bin/git bamboo_repository_git_username= bamboo_planRepository_1_previousRevision=11346f873e4ecb2d191499fd1d52b8de07a65bf3 bamboo_planRepository_branchDisplayName=develop bamboo_planRepository_1_type=gitv2 bamboo_planRepository_branchName=develop bamboo_capability_system_builder_ant_j11_x11_Ant=/home/bamboo/buildtools/j11/x11-ant-j11 bamboo_capability_system_builderivy_Ivy=/usr bamboo_plan_storageTag=plan-24510817 bamboo_capability_system_builder_gradle_Gradle=/home/bamboo/buildtools/gradle bamboo_hg_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_hg-repositories-cache bamboo_planRepository_1_username= bamboo_planRepository_type=gitv2 bamboo_git_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_git-repositories-cache bamboo_ManualBuildTriggerReason_userName=Soares bamboo_repository_git_repositoryUrl=http://source.jalview.org/git/jalview.git bamboo_repository_24707249_previous_revision_number=11346f873e4ecb2d191499fd1d52b8de07a65bf3 bamboo_repository_24707249_branch_name=develop bamboo_capability_system_builder_ant_Ant=/usr/share/ant bamboo_capability_system_builder_mvn3_Maven_3=/usr/share/maven bamboo_tmp_directory=/srv/bamboo/bamboo-home/temp bamboo_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDI-JOB1 bamboo_planKey=JB-GDI bamboo_planRepository_1_repositoryUrl=http://source.jalview.org/git/jalview.git bamboo_planRepository_username= bamboo_repository_24707249_git_branch=develop bamboo_planRepository_1_branchName=develop |
| 20-Feb-2023 12:46:48 | installers/ |
| 20-Feb-2023 12:46:48 | installers/11/ |
| 20-Feb-2023 12:46:48 | installers/11/jalview_develop-2_11_3_0-d20230220-linux-aarch64-java_11.sh |
| 20-Feb-2023 12:46:50 | installers/11/jalview_develop-2_11_3_0-d20230220-unix-java_11.tar.gz |
| 20-Feb-2023 12:46:52 | installers/11/sha256sums |
| 20-Feb-2023 12:46:52 | installers/11/Jalview_Develop-2_11_3_0-d20230220-windows-x64-java_11.exe |
| 20-Feb-2023 12:46:55 | installers/11/md5sums |
| 20-Feb-2023 12:46:55 | installers/11/output.txt |
| 20-Feb-2023 12:46:55 | installers/11/jalview_develop-2_11_3_0-d20230220-linux-x64-java_11.sh |
| 20-Feb-2023 12:46:58 | installers/11/Jalview_Develop-2_11_3_0-d20230220-macOS-aarch64-macos-java_11.dmg |
| 20-Feb-2023 12:47:01 | installers/11/jalview_develop-2_11_3_0-d20230220-unix-java_11.sh |
| 20-Feb-2023 12:47:02 | installers/11/updates.xml |
| 20-Feb-2023 12:47:02 | installers/11/Jalview_Develop-2_11_3_0-d20230220-macOS-x64-macos-java_11.dmg |
| 20-Feb-2023 12:47:05 | Finished task 'Create tar of DEVELOP channel installers' with result: Success |
| 20-Feb-2023 12:47:05 | Running post build plugin 'NCover Results Collector' |
| 20-Feb-2023 12:47:05 | Running post build plugin 'Artifact Copier' |
| 20-Feb-2023 12:47:05 | Publishing an artifact: develop_installers_tar |
| 20-Feb-2023 12:47:07 | Finished publishing of artifact Shared artifact: [develop_installers_tar], pattern: [develop_installers.tgz] anchored at: [build] in 1.821 s |
| 20-Feb-2023 12:47:07 | Running post build plugin 'Artifactory Release Management Staging' |
| 20-Feb-2023 12:47:07 | Running post build plugin 'Artifactory Build Info Copier' |
| 20-Feb-2023 12:47:07 | Running post build plugin 'Artifactory Gradle Properties Info Copier' |
| 20-Feb-2023 12:47:07 | Running post build plugin 'npm Cache Cleanup' |
| 20-Feb-2023 12:47:07 | Running post build plugin 'Clover Results Collector' |
| 20-Feb-2023 12:47:07 | Running post build plugin 'Docker Container Cleanup' |
| 20-Feb-2023 12:47:07 | Finalising the build... |
| 20-Feb-2023 12:47:07 | Stopping timer. |
| 20-Feb-2023 12:47:07 | Build JB-GDI-JOB1-11 completed. |
| 20-Feb-2023 12:47:07 | Running on server: post build plugin 'NCover Results Collector' |
| 20-Feb-2023 12:47:07 | Running on server: post build plugin 'Build Hanging Detection Configuration' |
| 20-Feb-2023 12:47:07 | Running on server: post build plugin 'Clover Delta Calculator' |
| 20-Feb-2023 12:47:07 | Running on server: post build plugin 'Maven Dependencies Postprocessor' |
| 20-Feb-2023 12:47:07 | All post build plugins have finished |
| 20-Feb-2023 12:47:07 | Generating build results summary... |
| 20-Feb-2023 12:47:07 | Saving build results to disk... |
| 20-Feb-2023 12:47:07 | Logging substituted variables... |
| 20-Feb-2023 12:47:07 | Indexing build results... |
| 20-Feb-2023 12:47:07 | Finished building JB-GDI-JOB1-11. |