simple	20-Feb-2023 12:45:06	Build Jalview Builds - Getdown DEVELOP Installers - Default Job #11 (JB-GDI-JOB1-11) started building on agent Default Agent
simple	20-Feb-2023 12:45:06	
simple	20-Feb-2023 12:45:06	Build working directory is /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDI-JOB1
simple	20-Feb-2023 12:45:06	Executing build Jalview Builds - Getdown DEVELOP Installers - Default Job #11 (JB-GDI-JOB1-11)
simple	20-Feb-2023 12:45:06	Starting task 'Checkout Default Repository' of type 'com.atlassian.bamboo.plugins.vcs:task.vcs.checkout'
simple	20-Feb-2023 12:45:06	Checking out into /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDI-JOB1
simple	20-Feb-2023 12:45:06	Updating source code to revision: e6e897ddf845d4e79ff5e6c7afddf66766c7d31d
simple	20-Feb-2023 12:45:07	Fetching 'refs/heads/develop' from 'http://source.jalview.org/git/jalview.git'.
simple	20-Feb-2023 12:45:07	Checking out revision e6e897ddf845d4e79ff5e6c7afddf66766c7d31d.
simple	20-Feb-2023 12:45:11	From file:///srv/bamboo/bamboo-home/xml-data/build-dir/_git-repositories-cache/2597b807d50ab756c763be1d374b09c84289a164
simple	20-Feb-2023 12:45:11	 * [new branch]      bug/JAL-360_JAL-3984_F2_stops_working_after_some_dialogs -> origin/bug/JAL-360_JAL-3984_F2_stops_working_after_some_dialogs
simple	20-Feb-2023 12:45:11	 * [new branch]      bug/JAL-4118_Fix_QuitHandlerTest -> origin/bug/JAL-4118_Fix_QuitHandlerTest
simple	20-Feb-2023 12:45:11	 * [new branch]      bug/JAL-4125_flatlaf_quithandler_warning_doesnt_display_properly -> origin/bug/JAL-4125_flatlaf_quithandler_warning_doesnt_display_properly
simple	20-Feb-2023 12:45:11	 * [new branch]      bug/JAL-4128_resizing_overview_with_solid_drags_causes_exception -> origin/bug/JAL-4128_resizing_overview_with_solid_drags_causes_exception
simple	20-Feb-2023 12:45:11	   cd7f028..e6e897d  develop    -> origin/develop
simple	20-Feb-2023 12:45:11	 * [new branch]      development/JAL-3878_ws_overhaul_3_merged_with_2_12_Merged -> origin/development/JAL-3878_ws_overhaul_3_merged_with_2_12_Merged
simple	20-Feb-2023 12:45:11	 * [new branch]      development/Release_2_12_Branch -> origin/development/Release_2_12_Branch
simple	20-Feb-2023 12:45:11	 * [new branch]      development/Release_2_12_Branch_JAL-4102_21126_merge -> origin/development/Release_2_12_Branch_JAL-4102_21126_merge
simple	20-Feb-2023 12:45:11	   5d49f77..d6eab72  feature/JAL-1713_overviewInProject -> origin/feature/JAL-1713_overviewInProject
simple	20-Feb-2023 12:45:11	   a08e984..01f8ff4  features/r2_11_2_alphafold/JAL-629 -> origin/features/r2_11_2_alphafold/JAL-629
simple	20-Feb-2023 12:45:11	 * [new branch]      mmw/JAL-3878-ws-overhaul -> origin/mmw/JAL-3878-ws-overhaul
simple	20-Feb-2023 12:45:11	 * [new branch]      mmw/JAL-3878_ws-overhaul-3 -> origin/mmw/JAL-3878_ws-overhaul-3
simple	20-Feb-2023 12:45:11	 * [new branch]      mmw/JAL-3954_ebi_phmmer -> origin/mmw/JAL-3954_ebi_phmmer
simple	20-Feb-2023 12:45:11	 * [new branch]      mmw/Release_2_12_ws_merge -> origin/mmw/Release_2_12_ws_merge
simple	20-Feb-2023 12:45:11	   7723baa..09be4c7  new_feature/JAL-4019_ambiguous_base_colourscheme -> origin/new_feature/JAL-4019_ambiguous_base_colourscheme
simple	20-Feb-2023 12:45:11	 * [new branch]      patch/JAL-4114_updated_3dbeacons_api -> origin/patch/JAL-4114_updated_3dbeacons_api
simple	20-Feb-2023 12:45:11	 * [new branch]      patch/JAL-4119_sifts_ftp_split -> origin/patch/JAL-4119_sifts_ftp_split
simple	20-Feb-2023 12:45:11	 * [new branch]      patch/JAL-840_clustalx_docs_fix -> origin/patch/JAL-840_clustalx_docs_fix
simple	20-Feb-2023 12:45:11	   e9afa3f..5faac11  patch/Release_2_11_2_6_Branch -> origin/patch/Release_2_11_2_6_Branch
simple	20-Feb-2023 12:45:11	   519295f..0419deb  releases/Release_2_11_2_Branch -> origin/releases/Release_2_11_2_Branch
simple	20-Feb-2023 12:45:11	 * [new branch]      spikes/JAL-4113_javafx_with_Jalview_MSA -> origin/spikes/JAL-4113_javafx_with_Jalview_MSA
simple	20-Feb-2023 12:45:11	 * [new tag]         Release_2_11_2_6 -> Release_2_11_2_6
simple	20-Feb-2023 12:45:12	Switched to branch 'develop'
simple	20-Feb-2023 12:45:12	Your branch is behind 'origin/develop' by 435 commits, and can be fast-forwarded.
simple	20-Feb-2023 12:45:12	  (use "git pull" to update your local branch)
simple	20-Feb-2023 12:45:13	HEAD is now at e6e897d JAL-4128 Catch RasterFormatException caused whilst resizing Overview window, recalculate OverviewDimensions od instead. Prevent negative OverviewDimensions being set to avoid problem with vertically fully shrunk overview window 'losing' the alignement canvas.
simple	20-Feb-2023 12:45:13	Updated source code to revision: e6e897ddf845d4e79ff5e6c7afddf66766c7d31d
simple	20-Feb-2023 12:45:13	Finished task 'Checkout Default Repository' with result: Success
simple	20-Feb-2023 12:45:13	Running pre-build action: VCS Version Collector
simple	20-Feb-2023 12:45:13	Running pre-build action: Artifactory Release Staging
command	20-Feb-2023 12:45:13	Substituting variable: ${bamboo.planKey} with JB-GDI
simple	20-Feb-2023 12:45:13	Starting task 'Jalview DEVELOP distribution for Java 11' of type 'org.jfrog.bamboo.bamboo-artifactory-plugin:artifactoryGradleTask'
simple	20-Feb-2023 12:45:13	Bamboo Artifactory Plugin version: 2.6.2
command	20-Feb-2023 12:45:13	Beginning to execute external process for build 'Jalview Builds - Getdown DEVELOP Installers - Default Job #11 (JB-GDI-JOB1-11)'\n ... running command line: \n/home/bamboo/buildtools/gradle/bin/gradle -x test -PCHANNEL=DEVELOP -PJAVA_VERSION=11 -Pbamboo_planKey=JB-GDI clean shadowJar installers\n ... in: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDI-JOB1\n ... using extra environment variables: \nbamboo_planRepository_1_branch=develop\nbamboo_repository_24707249_git_username=\nbamboo_capability_system_builder_maven_Artifactory_Maven_3=/usr\nCATALINA_PID=/home/bamboo/latest/work/bamboo.pid\nbamboo_planRepository_1_branchDisplayName=develop\nbamboo_repository_revision_number=e6e897ddf845d4e79ff5e6c7afddf66766c7d31d\nbamboo_resultsUrl=https://builds.jalview.org/browse/JB-GDI-JOB1-11\nJAVA_OPTS=-Xms512m -Xmx1024m    -Dbamboo.home=/srv/bamboo/bamboo-home -Djdk.tls.ephemeralDHKeySize=2048\nbamboo_build_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDI-JOB1\nbamboo_planRepository_1_name=Jalview Git\nbamboo_buildKey=JB-GDI-JOB1\nbamboo_repository_24707249_git_repositoryUrl=http://source.jalview.org/git/jalview.git\nbamboo_shortPlanName=Getdown DEVELOP Installers\nbamboo_planRepository_name=Jalview Git\nLOGNAME=bamboo\nbamboo_buildNumber=11\nPWD=/\nbamboo_capability_system_builder_command_Eclipse_2019_09=/home/bamboo/buildtools/eclipse/jee-2019-09/eclipse/eclipse\nbamboo_shortJobName=Default Job\nbamboo_buildResultsUrl=https://builds.jalview.org/browse/JB-GDI-JOB1-11\nbamboo_planRepository_repositoryUrl=http://source.jalview.org/git/jalview.git\nSHELL=/bin/bash\nbamboo_agentId=196609\nbamboo_planName=Jalview Builds - Getdown DEVELOP Installers\nbamboo_shortPlanKey=GDI\nbamboo_shortJobKey=JOB1\nbamboo_capability_system_jdk_OpenJDK_11=/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk\nbamboo_planRepository_revision=e6e897ddf845d4e79ff5e6c7afddf66766c7d31d\nbamboo_buildTimeStamp=2023-02-20T12:44:45.832Z\nbamboo_repository_previous_revision_number=11346f873e4ecb2d191499fd1d52b8de07a65bf3\nbamboo_planRepository_previousRevision=11346f873e4ecb2d191499fd1d52b8de07a65bf3\nbamboo_repository_git_branch=develop\nbamboo_buildResultKey=JB-GDI-JOB1-11\nbamboo_repository_branch_name=develop\nbamboo_buildPlanName=Jalview Builds - Getdown DEVELOP Installers - Default Job\nbamboo_capability_system_builder_ant_j11_Ant=/home/bamboo/buildtools/j11/ant-j11\nbamboo_planRepository_1_revision=e6e897ddf845d4e79ff5e6c7afddf66766c7d31d\nSHLVL=1\nbamboo_capability_system_builder_ant_x11_Ant=/home/bamboo/buildtools/x11-ant\nbamboo_repository_24707249_name=Jalview Git\nbamboo_repository_name=Jalview Git\nJAVA_HOME=/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/\nbamboo_dependenciesDisabled=false\nLANG=en_GB.UTF-8\nbamboo_buildFailed=false\nbamboo_capability_system_jdk_OpenJDK_8=/home/bamboo/buildtools/jdk/jdk-8-linux-x64/jdk\nbamboo_repository_24707249_revision_number=e6e897ddf845d4e79ff5e6c7afddf66766c7d31d\nbamboo_planRepository_branch=develop\nbamboo_agentWorkingDirectory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609\nbamboo_capability_system_git_executable=/bin/git\nbamboo_repository_git_username=\nbamboo_planRepository_1_previousRevision=11346f873e4ecb2d191499fd1d52b8de07a65bf3\nbamboo_planRepository_branchDisplayName=develop\nbamboo_planRepository_1_type=gitv2\nbamboo_planRepository_branchName=develop\n_=/usr/bin/java\nbamboo_capability_system_builder_ant_j11_x11_Ant=/home/bamboo/buildtools/j11/x11-ant-j11\nbamboo_capability_system_builderivy_Ivy=/usr\nbamboo_plan_storageTag=plan-24510817\nbamboo_capability_system_builder_gradle_Gradle=/home/bamboo/buildtools/gradle\nbamboo_hg_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_hg-repositories-cache\nbamboo_planRepository_1_username=\nbamboo_planRepository_type=gitv2\nUSER=bamboo\nbamboo_git_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_git-repositories-cache\nbamboo_ManualBuildTriggerReason_userName=Soares\nbamboo_repository_git_repositoryUrl=http://source.jalview.org/git/jalview.git\nbamboo_repository_24707249_previous_revision_number=11346f873e4ecb2d191499fd1d52b8de07a65bf3\nbamboo_repository_24707249_branch_name=develop\nbamboo_capability_system_builder_ant_Ant=/usr/share/ant\nbamboo_capability_system_builder_mvn3_Maven_3=/usr/share/maven\nbamboo_tmp_directory=/srv/bamboo/bamboo-home/temp\nbamboo_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDI-JOB1\nbamboo_planKey=JB-GDI\nbamboo_planRepository_1_repositoryUrl=http://source.jalview.org/git/jalview.git\nbamboo_planRepository_username=\nbamboo_repository_24707249_git_branch=develop\nHOME=/home/bamboo\nbamboo_planRepository_1_branchName=develop\nPATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin\n
build	20-Feb-2023 12:45:16	
build	20-Feb-2023 12:45:16	> Configure project :
build	20-Feb-2023 12:45:16	Using properties from file './utils/channels/develop/channel_gradle.properties'
build	20-Feb-2023 12:45:16	JALVIEW_VERSION is set to '2.11.3.0'
build	20-Feb-2023 12:45:16	HEADLESS BUILD
build	20-Feb-2023 12:45:16	J2S ENABLED
build	20-Feb-2023 12:45:16	Using a DEVELOP profile.
build	20-Feb-2023 12:45:16	eclipseDir exists
build	20-Feb-2023 12:45:16	
build	20-Feb-2023 12:45:16	> Task :clean
build	20-Feb-2023 12:45:16	> Task :cleanPackageDir
build	20-Feb-2023 12:45:16	> Task :cleanInstallersDataFiles
build	20-Feb-2023 12:45:18	> Task :copyHelp
build	20-Feb-2023 12:45:20	> Task :buildIndices
build	20-Feb-2023 12:45:20	> Task :copyResources
build	20-Feb-2023 12:45:20	> Task :copyChannelResources
build	20-Feb-2023 12:45:20	
build	20-Feb-2023 12:45:20	> Task :createBuildProperties
build	20-Feb-2023 12:45:20	Execution optimizations have been disabled for task ':createBuildProperties' to ensure correctness due to the following reasons:
build	20-Feb-2023 12:45:20	  - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDI-JOB1/build/resources/resources_build'. Reason: Task ':createBuildProperties' uses this output of task ':copyChannelResources' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
build	20-Feb-2023 12:45:20	
build	20-Feb-2023 12:45:20	> Task :buildResources
build	20-Feb-2023 12:45:21	> Task :copyDocs
build	20-Feb-2023 12:45:21	
build	20-Feb-2023 12:45:21	> Task :convertMdFiles
build	20-Feb-2023 12:45:21	Creating /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDI-JOB1/build/resources/doc_build/doc/README-DMG_creation.html
build	20-Feb-2023 12:45:21	Creating /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDI-JOB1/build/resources/doc_build/doc/releaseprocess.html
build	20-Feb-2023 12:45:21	Creating /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDI-JOB1/build/resources/doc_build/doc/README-DMG_background_image_creation.html
build	20-Feb-2023 12:45:21	Creating /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDI-JOB1/build/resources/doc_build/doc/building.html
build	20-Feb-2023 12:45:21	
build	20-Feb-2023 12:45:21	> Task :releasesTemplates
build	20-Feb-2023 12:45:21	Execution optimizations have been disabled for task ':releasesTemplates' to ensure correctness due to the following reasons:
build	20-Feb-2023 12:45:21	  - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDI-JOB1/build/resources/help_build/help/html/releases.html'. Reason: Task ':buildIndices' uses this output of task ':releasesTemplates' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
build	20-Feb-2023 12:45:21	  - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDI-JOB1/build/resources/help_build/help/html/whatsNew.html'. Reason: Task ':buildIndices' uses this output of task ':releasesTemplates' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
build	20-Feb-2023 12:45:21	
build	20-Feb-2023 12:45:21	> Task :prepare
build	20-Feb-2023 12:45:23	
build	20-Feb-2023 12:45:23	> Task :compileJava
build	20-Feb-2023 12:45:23	Setting target compatibility to 11
error	20-Feb-2023 12:45:32	/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDI-JOB1/src/jalview/analysis/Finder.java:609: warning: non-varargs call of varargs method with inexact argument type for last parameter;
error	20-Feb-2023 12:45:32	      allFeatures = sf.getAllFeatures(null);
error	20-Feb-2023 12:45:32	                                      ^
error	20-Feb-2023 12:45:32	  cast to String for a varargs call
error	20-Feb-2023 12:45:32	  cast to String[] for a non-varargs call and to suppress this warning
error	20-Feb-2023 12:45:33	Note: Some input files use or override a deprecated API.
error	20-Feb-2023 12:45:33	Note: Recompile with -Xlint:deprecation for details.
error	20-Feb-2023 12:45:33	Note: Some input files use unchecked or unsafe operations.
error	20-Feb-2023 12:45:33	Note: Recompile with -Xlint:unchecked for details.
error	20-Feb-2023 12:45:33	1 warning
build	20-Feb-2023 12:45:33	
build	20-Feb-2023 12:45:33	> Task :processResources
build	20-Feb-2023 12:45:33	Execution optimizations have been disabled for task ':processResources' to ensure correctness due to the following reasons:
build	20-Feb-2023 12:45:33	  - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDI-JOB1/build/resources/doc_build'. Reason: Task ':processResources' uses this output of task ':convertMdFiles' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
build	20-Feb-2023 12:45:33	  - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDI-JOB1/build/resources/doc_build'. Reason: Task ':processResources' uses this output of task ':copyDocs' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
build	20-Feb-2023 12:45:33	  - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDI-JOB1/build/resources/help_build'. Reason: Task ':processResources' uses this output of task ':buildIndices' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
build	20-Feb-2023 12:45:33	  - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDI-JOB1/build/resources/help_build'. Reason: Task ':processResources' uses this output of task ':copyHelp' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
build	20-Feb-2023 12:45:33	  - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDI-JOB1/build/resources/help_build'. Reason: Task ':processResources' uses this output of task ':releasesTemplates' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
build	20-Feb-2023 12:45:33	  - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDI-JOB1/build/resources/resources_build'. Reason: Task ':processResources' uses this output of task ':copyChannelResources' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
build	20-Feb-2023 12:45:33	  - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDI-JOB1/build/resources/resources_build'. Reason: Task ':processResources' uses this output of task ':copyResources' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
build	20-Feb-2023 12:45:33	  - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDI-JOB1/build/resources/resources_build'. Reason: Task ':processResources' uses this output of task ':createBuildProperties' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
build	20-Feb-2023 12:45:33	
build	20-Feb-2023 12:45:33	> Task :classes
build	20-Feb-2023 12:45:35	
build	20-Feb-2023 12:45:35	> Task :compileLinkCheck
build	20-Feb-2023 12:45:35	Execution optimizations have been disabled for task ':compileLinkCheck' to ensure correctness due to the following reasons:
build	20-Feb-2023 12:45:35	  - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDI-JOB1/utils'. Reason: Task ':convertMdFiles' uses this output of task ':compileLinkCheck' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
build	20-Feb-2023 12:45:35	  - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDI-JOB1/utils'. Reason: Task ':copyChannelResources' uses this output of task ':compileLinkCheck' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
build	20-Feb-2023 12:45:35	
build	20-Feb-2023 12:45:35	> Task :linkCheck
build	20-Feb-2023 12:45:35	Checking help file links
build	20-Feb-2023 12:45:35	
build	20-Feb-2023 12:45:35	Results:
build	20-Feb-2023 12:45:35	148 distinct help targets
build	20-Feb-2023 12:45:35	148 help mappings
build	20-Feb-2023 12:45:35	0 invalid targets
build	20-Feb-2023 12:45:35	26 unused targets
build	20-Feb-2023 12:45:35	    uniprotfetcher: html/features/uniprotsequencefetcher.html
build	20-Feb-2023 12:45:35	    overviewprefs: html/features/preferences.html#overview
build	20-Feb-2023 12:45:35	    cdnafeatures: html/features/codingfeatures.html
build	20-Feb-2023 12:45:35	    ensemblfetch: html/features/ensemblsequencefetcher.html
build	20-Feb-2023 12:45:35	    io.modellerpir: html/io/modellerpir.html
build	20-Feb-2023 12:45:35	    pdbmcviewer: html/features/pdbviewer.html
build	20-Feb-2023 12:45:35	    groovy.colours: html/features/groovy.html#groovyColours
build	20-Feb-2023 12:45:35	    seqmappings: html/features/seqmappings.html
build	20-Feb-2023 12:45:35	    uniprotfts: html/features/uniprotsequencefetcher.html#uniprotfts
build	20-Feb-2023 12:45:35	    splitframe.mirrorfonts: html/features/splitView.html#mirror
build	20-Feb-2023 12:45:35	    subtMatrices.pam250: html/calculations/scorematrices.html#pam250
build	20-Feb-2023 12:45:35	    search: html/features/search.html
build	20-Feb-2023 12:45:35	    viewingpdbs.reps: html/features/viewingpdbs.html#viewreps
build	20-Feb-2023 12:45:35	    alformats: html/io/fileformats.html
build	20-Feb-2023 12:45:35	    strucprefs: html/features/preferences.html#structure
build	20-Feb-2023 12:45:35	    siftsmapping: html/features/siftsmapping.html
build	20-Feb-2023 12:45:35	    chimera.annotxfer: html/features/chimera.html#annotxfer
build	20-Feb-2023 12:45:35	    pdbfts: html/features/pdbsequencefetcher.html#pdbfts
build	20-Feb-2023 12:45:35	    newkeys: html/features/newkeystrokes.html
build	20-Feb-2023 12:45:35	    importvcf.attribs: html/features/importvcf.html#attribs
build	20-Feb-2023 12:45:35	    seqfeatures.settings.selcols: html/features/featuresettings.html#selectbyfeature
build	20-Feb-2023 12:45:35	    jalarchive: html/features/jalarchive.html
build	20-Feb-2023 12:45:35	    newsreader: html/webServices/newsreader.html
build	20-Feb-2023 12:45:35	    popMenuAddref: html/menus/popupMenu.html#addrefannot
build	20-Feb-2023 12:45:35	    splitframe.virtualfeats: html/features/splitView.html#virtualfeats
build	20-Feb-2023 12:45:35	    overview: html/features/overview.html
build	20-Feb-2023 12:45:35	0 invalid map urls
build	20-Feb-2023 12:45:35	0 invalid image attributes
build	20-Feb-2023 12:45:35	403 internal href links (79 with anchors)
build	20-Feb-2023 12:45:35	0 invalid internal href links
build	20-Feb-2023 12:45:35	0 invalid internal anchor links
build	20-Feb-2023 12:45:35	106 external href links
build	20-Feb-2023 12:45:35	External links not verified as internet not available
build	20-Feb-2023 12:45:35	*** Success ***
build	20-Feb-2023 12:45:36	
build	20-Feb-2023 12:45:36	> Task :jar
build	20-Feb-2023 12:45:37	> Task :syncJars
build	20-Feb-2023 12:45:37	> Task :makeDist
build	20-Feb-2023 12:45:43	> Task :shadowJar
build	20-Feb-2023 12:45:44	
build	20-Feb-2023 12:45:44	> Task :copyInstall4jTemplate
build	20-Feb-2023 12:45:44	Execution optimizations have been disabled for task ':copyInstall4jTemplate' to ensure correctness due to the following reasons:
build	20-Feb-2023 12:45:44	  - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDI-JOB1/utils/install4j/file_associations_auto-install4j10.xml'. Reason: Task ':copyInstall4jTemplate' uses this output of task ':compileLinkCheck' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
build	20-Feb-2023 12:45:44	  - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDI-JOB1/utils/install4j/install4j10_template.install4j'. Reason: Task ':copyInstall4jTemplate' uses this output of task ':compileLinkCheck' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
build	20-Feb-2023 12:45:44	  - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDI-JOB1/utils/install4j/jalview-install4j-conf.install4j'. Reason: Task ':compileLinkCheck' uses this output of task ':copyInstall4jTemplate' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
build	20-Feb-2023 12:45:44	  - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDI-JOB1/utils/install4j/jalview-install4j-conf.install4j'. Reason: Task ':linkCheck' uses this output of task ':copyInstall4jTemplate' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
build	20-Feb-2023 12:45:44	
build	20-Feb-2023 12:45:44	> Task :getdownWebsite
build	20-Feb-2023 12:45:45	
build	20-Feb-2023 12:45:45	> Task :getdownDigest
build	20-Feb-2023 12:45:45	Generating digest file './build/website/docroot/getdown/develop/11/digest.txt'...
build	20-Feb-2023 12:45:45	Generating digest file './build/website/docroot/getdown/develop/11/digest2.txt'...
build	20-Feb-2023 12:45:45	
build	20-Feb-2023 12:45:45	> Task :getdown
build	20-Feb-2023 12:45:45	LIKELY RSYNC COMMAND:
build	20-Feb-2023 12:45:45	mkdir -p '/Volumes/jalview/docroot/getdown/develop/11/'
build	20-Feb-2023 12:45:45	rsync -avh --delete './build/website/docroot/getdown/develop/11/' '/Volumes/jalview/docroot/getdown/develop/11/'
error	20-Feb-2023 12:45:45	2023/02/20 12:45:44:811 WARNING Starting without install4j classes
error	20-Feb-2023 12:45:45	2023/02/20 12:45:45:245 WARNING Starting without install4j classes
build	20-Feb-2023 12:45:47	
build	20-Feb-2023 12:45:47	> Task :installerFiles
build	20-Feb-2023 12:45:47	Using projectFile /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDI-JOB1/utils/install4j/jalview-install4j-conf.install4j
build	20-Feb-2023 12:45:49	install4j version 10.0.3 (build 10052), built on 2022-09-29
build	20-Feb-2023 12:45:49	Using Java 11.0.15 from /srv/bamboo/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk
build	20-Feb-2023 12:45:49	Registered to 
build	20-Feb-2023 12:45:49	
build	20-Feb-2023 12:45:49	Loading config file /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDI-JOB1/utils/install4j/jalview-install4j-conf.install4j
build	20-Feb-2023 12:45:50	[WARNING] The version 10.0.3 of this install4j installation is lower than the version 10.0.4 of the IDE that saved the config file.
build	20-Feb-2023 12:45:50	Creating media file 'Windows x64 EXE Installer':
build	20-Feb-2023 12:45:52	  Collecting files:
build	20-Feb-2023 12:45:52	  Compiling launchers:
build	20-Feb-2023 12:45:52	    Compiling launcher 'Jalview Launcher':
build	20-Feb-2023 12:45:52	      Generating VM options file jalviewg.vmoptions.
build	20-Feb-2023 12:45:52	  Creating media file: 
build	20-Feb-2023 12:45:52	    Using custom installer icon: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDI-JOB1/utils/install4j/../../utils/channels/develop/images/jalview_develop_logo.ico
build	20-Feb-2023 12:45:55	    Zipping custom code & resources JAR file
build	20-Feb-2023 12:45:55	    Identifying components
build	20-Feb-2023 12:45:55	    Adding JRE (jre_11_windows_x64.tar.gz)
build	20-Feb-2023 12:45:55	    Shrinking runtime
build	20-Feb-2023 12:45:56	  
build	20-Feb-2023 12:45:56	Creating media file 'macOS x64 Disk Image':
build	20-Feb-2023 12:45:56	  Collecting files:
build	20-Feb-2023 12:45:56	  Compiling launchers:
build	20-Feb-2023 12:45:56	    Compiling launcher 'Jalview Launcher':
build	20-Feb-2023 12:45:57	      Generating VM options file vmoptions.txt.
build	20-Feb-2023 12:45:57	  Creating media file: 
build	20-Feb-2023 12:45:57	      Zipping custom code & resources JAR file
build	20-Feb-2023 12:45:57	      Shrinking runtime
build	20-Feb-2023 12:45:58	  
build	20-Feb-2023 12:45:58	Creating media file 'macOS aarch64 Disk Image':
build	20-Feb-2023 12:45:58	  Collecting files:
build	20-Feb-2023 12:45:58	  Compiling launchers:
build	20-Feb-2023 12:45:58	    Compiling launcher 'Jalview Launcher':
build	20-Feb-2023 12:45:58	      Generating VM options file vmoptions.txt.
build	20-Feb-2023 12:45:58	  Creating media file: 
build	20-Feb-2023 12:45:58	      Zipping custom code & resources JAR file
build	20-Feb-2023 12:45:58	      Shrinking runtime
build	20-Feb-2023 12:45:59	  
build	20-Feb-2023 12:45:59	Creating media file 'Linux x64 Shell Installer':
build	20-Feb-2023 12:46:00	  Collecting files:
build	20-Feb-2023 12:46:00	  Compiling launchers:
build	20-Feb-2023 12:46:00	    Compiling launcher 'Jalview Launcher':
build	20-Feb-2023 12:46:00	      Generating launcher script file
build	20-Feb-2023 12:46:00	      Generating VM options file .i4j_external_735/jalviewg.vmoptions.
build	20-Feb-2023 12:46:00	  Creating media file: 
build	20-Feb-2023 12:46:00	    Generating launcher script file
build	20-Feb-2023 12:46:01	    Zipping custom code & resources JAR file
build	20-Feb-2023 12:46:01	    Identifying components
build	20-Feb-2023 12:46:01	    Adding JRE (jre_11_linux_x64.tar.gz)
build	20-Feb-2023 12:46:01	    Shrinking runtime
build	20-Feb-2023 12:46:01	  
build	20-Feb-2023 12:46:01	Creating media file 'Linux aarch64 Shell Installer':
build	20-Feb-2023 12:46:03	  Collecting files:
build	20-Feb-2023 12:46:03	  Compiling launchers:
build	20-Feb-2023 12:46:03	    Compiling launcher 'Jalview Launcher':
build	20-Feb-2023 12:46:03	      Generating launcher script file
build	20-Feb-2023 12:46:03	      Generating VM options file .i4j_external_735/jalviewg.vmoptions.
build	20-Feb-2023 12:46:03	  Creating media file: 
build	20-Feb-2023 12:46:03	    Generating launcher script file
build	20-Feb-2023 12:46:03	    Zipping custom code & resources JAR file
build	20-Feb-2023 12:46:03	    Identifying components
build	20-Feb-2023 12:46:03	    Adding JRE (jre_11_linux_aarch64.tar.gz)
build	20-Feb-2023 12:46:03	    Shrinking runtime
build	20-Feb-2023 12:46:04	  
build	20-Feb-2023 12:46:04	Creating media file 'Unix .tar.gz Archive':
build	20-Feb-2023 12:46:04	  Collecting files:
build	20-Feb-2023 12:46:04	  Compiling launchers:
build	20-Feb-2023 12:46:04	    Compiling launcher 'Jalview Launcher':
build	20-Feb-2023 12:46:04	      Generating launcher script file
build	20-Feb-2023 12:46:04	      Generating VM options file .i4j_external_735/jalviewg.vmoptions.
build	20-Feb-2023 12:46:04	  Creating media file: 
build	20-Feb-2023 12:46:04	      Shrinking runtime
build	20-Feb-2023 12:46:05	  
build	20-Feb-2023 12:46:05	Creating media file 'Unix Shell Installer':
build	20-Feb-2023 12:46:05	  Collecting files:
build	20-Feb-2023 12:46:05	  Compiling launchers:
build	20-Feb-2023 12:46:05	    Compiling launcher 'Jalview Launcher':
build	20-Feb-2023 12:46:05	      Generating launcher script file
build	20-Feb-2023 12:46:05	      Generating VM options file .i4j_external_735/jalviewg.vmoptions.
build	20-Feb-2023 12:46:05	  Creating media file: 
build	20-Feb-2023 12:46:05	    Generating launcher script file
build	20-Feb-2023 12:46:05	    Zipping custom code & resources JAR file
build	20-Feb-2023 12:46:05	    Identifying components
build	20-Feb-2023 12:46:05	    Shrinking runtime
build	20-Feb-2023 12:46:05	  
build	20-Feb-2023 12:46:05	Compressing 7 media files with 4 threads:
build	20-Feb-2023 12:46:31	
build	20-Feb-2023 12:46:31	Compressed media file 'Unix Shell Installer':
build	20-Feb-2023 12:46:31	  Compressing files
build	20-Feb-2023 12:46:31	  Applying LZMA compression
build	20-Feb-2023 12:46:31	  Moving media files to media directory /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDI-JOB1/build/install4j/11
build	20-Feb-2023 12:46:31	  The name of the media file is jalview_develop-2_11_3_0-d20230220-unix-java_11.sh.
build	20-Feb-2023 12:46:31	  The size of the media file is 43.4 MB
build	20-Feb-2023 12:46:33	
build	20-Feb-2023 12:46:33	Compressed media file 'Linux aarch64 Shell Installer':
build	20-Feb-2023 12:46:33	  Compressing files
build	20-Feb-2023 12:46:33	  Applying LZMA compression
build	20-Feb-2023 12:46:33	  Moving media files to media directory /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDI-JOB1/build/install4j/11
build	20-Feb-2023 12:46:33	  The name of the media file is jalview_develop-2_11_3_0-d20230220-linux-aarch64-java_11.sh.
build	20-Feb-2023 12:46:33	  The size of the media file is 82.2 MB
build	20-Feb-2023 12:46:33	
build	20-Feb-2023 12:46:33	Compressed media file 'Windows x64 EXE Installer':
build	20-Feb-2023 12:46:33	  Compressing files
build	20-Feb-2023 12:46:33	  Applying LZMA compression
build	20-Feb-2023 12:46:33	  Moving media files to media directory /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDI-JOB1/build/install4j/11
build	20-Feb-2023 12:46:33	  The name of the media file is Jalview_Develop-2_11_3_0-d20230220-windows-x64-java_11.exe.
build	20-Feb-2023 12:46:33	  The size of the media file is 85.6 MB
build	20-Feb-2023 12:46:33	
build	20-Feb-2023 12:46:33	Compressed media file 'Linux x64 Shell Installer':
build	20-Feb-2023 12:46:33	  Compressing files
build	20-Feb-2023 12:46:33	  Applying LZMA compression
build	20-Feb-2023 12:46:33	  Moving media files to media directory /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDI-JOB1/build/install4j/11
build	20-Feb-2023 12:46:33	  The name of the media file is jalview_develop-2_11_3_0-d20230220-linux-x64-java_11.sh.
build	20-Feb-2023 12:46:33	  The size of the media file is 83.7 MB
build	20-Feb-2023 12:46:35	
build	20-Feb-2023 12:46:35	Compressed media file 'Unix .tar.gz Archive':
build	20-Feb-2023 12:46:35	  Moving media files to media directory /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDI-JOB1/build/install4j/11
build	20-Feb-2023 12:46:35	  The name of the media file is jalview_develop-2_11_3_0-d20230220-unix-java_11.tar.gz.
build	20-Feb-2023 12:46:35	  The size of the media file is 44.2 MB
build	20-Feb-2023 12:46:45	
build	20-Feb-2023 12:46:45	Compressed media file 'macOS x64 Disk Image':
build	20-Feb-2023 12:46:45	  Moving media files to media directory /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDI-JOB1/build/install4j/11
build	20-Feb-2023 12:46:45	  The name of the media file is Jalview_Develop-2_11_3_0-d20230220-macOS-x64-macos-java_11.dmg.
build	20-Feb-2023 12:46:45	  The size of the media file is 83.0 MB
build	20-Feb-2023 12:46:45	
build	20-Feb-2023 12:46:45	Compressed media file 'macOS aarch64 Disk Image':
build	20-Feb-2023 12:46:45	  Moving media files to media directory /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDI-JOB1/build/install4j/11
build	20-Feb-2023 12:46:45	  The name of the media file is Jalview_Develop-2_11_3_0-d20230220-macOS-aarch64-macos-java_11.dmg.
build	20-Feb-2023 12:46:45	  The size of the media file is 81.9 MB
build	20-Feb-2023 12:46:45	Writing md5sums.
build	20-Feb-2023 12:46:45	Writing sha256sums.
build	20-Feb-2023 12:46:45	Writing updates.xml.
build	20-Feb-2023 12:46:45	Please upload updates.xml to https://www.jalview.org/install4j/updates.xml
build	20-Feb-2023 12:46:45	and upload all generated media files to the same directory.
build	20-Feb-2023 12:46:45	
build	20-Feb-2023 12:46:46	Build completed in 56.7 seconds at 2023-02-20 12:46:45 with 1 warning.
build	20-Feb-2023 12:46:46	Run the build in verbose mode to get instructions on how to suppress selected warnings.
build	20-Feb-2023 12:46:47	
build	20-Feb-2023 12:46:47	> Task :installers
build	20-Feb-2023 12:46:47	
build	20-Feb-2023 12:46:47	Deprecated Gradle features were used in this build, making it incompatible with Gradle 8.0.
build	20-Feb-2023 12:46:47	
build	20-Feb-2023 12:46:47	You can use '--warning-mode all' to show the individual deprecation warnings and determine if they come from your own scripts or plugins.
build	20-Feb-2023 12:46:47	
build	20-Feb-2023 12:46:47	See https://docs.gradle.org/7.4.2/userguide/command_line_interface.html#sec:command_line_warnings
build	20-Feb-2023 12:46:47	
build	20-Feb-2023 12:46:47	Execution optimizations have been disabled for 5 invalid unit(s) of work during this build to ensure correctness.
build	20-Feb-2023 12:46:47	Please consult deprecation warnings for more details.
build	20-Feb-2023 12:46:47	
build	20-Feb-2023 12:46:47	BUILD SUCCESSFUL in 1m 33s
build	20-Feb-2023 12:46:47	23 actionable tasks: 23 executed
simple	20-Feb-2023 12:46:48	Finished task 'Jalview DEVELOP distribution for Java 11' with result: Success
simple	20-Feb-2023 12:46:48	Starting task 'Create tar of DEVELOP channel installers' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.script'
command	20-Feb-2023 12:46:48	Beginning to execute external process for build 'Jalview Builds - Getdown DEVELOP Installers - Default Job #11 (JB-GDI-JOB1-11)'\n ... running command line: \n/srv/bamboo/bamboo-home/temp/JB-GDI-JOB1-11-ScriptBuildTask-2210925595636211699.sh\n ... in: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDI-JOB1\n ... using extra environment variables: \nbamboo_planRepository_1_branch=develop\nbamboo_repository_24707249_git_username=\nbamboo_capability_system_builder_maven_Artifactory_Maven_3=/usr\nbamboo_planRepository_1_branchDisplayName=develop\nbamboo_repository_revision_number=e6e897ddf845d4e79ff5e6c7afddf66766c7d31d\nbamboo_resultsUrl=https://builds.jalview.org/browse/JB-GDI-JOB1-11\nbamboo_build_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDI-JOB1\nbamboo_planRepository_1_name=Jalview Git\nbamboo_buildKey=JB-GDI-JOB1\nbamboo_repository_24707249_git_repositoryUrl=http://source.jalview.org/git/jalview.git\nbamboo_shortPlanName=Getdown DEVELOP Installers\nbamboo_planRepository_name=Jalview Git\nbamboo_buildNumber=11\nbamboo_capability_system_builder_command_Eclipse_2019_09=/home/bamboo/buildtools/eclipse/jee-2019-09/eclipse/eclipse\nbamboo_shortJobName=Default Job\nbamboo_buildResultsUrl=https://builds.jalview.org/browse/JB-GDI-JOB1-11\nbamboo_planRepository_repositoryUrl=http://source.jalview.org/git/jalview.git\nbamboo_agentId=196609\nbamboo_planName=Jalview Builds - Getdown DEVELOP Installers\nbamboo_shortPlanKey=GDI\nbamboo_shortJobKey=JOB1\nbamboo_capability_system_jdk_OpenJDK_11=/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk\nbamboo_planRepository_revision=e6e897ddf845d4e79ff5e6c7afddf66766c7d31d\nbamboo_buildTimeStamp=2023-02-20T12:44:45.832Z\nbamboo_repository_previous_revision_number=11346f873e4ecb2d191499fd1d52b8de07a65bf3\nbamboo_planRepository_previousRevision=11346f873e4ecb2d191499fd1d52b8de07a65bf3\nbamboo_repository_git_branch=develop\nbamboo_buildResultKey=JB-GDI-JOB1-11\nbamboo_repository_branch_name=develop\nbamboo_buildPlanName=Jalview Builds - Getdown DEVELOP Installers - Default Job\nbamboo_capability_system_builder_ant_j11_Ant=/home/bamboo/buildtools/j11/ant-j11\nbamboo_planRepository_1_revision=e6e897ddf845d4e79ff5e6c7afddf66766c7d31d\nbamboo_capability_system_builder_ant_x11_Ant=/home/bamboo/buildtools/x11-ant\nbamboo_repository_24707249_name=Jalview Git\nbamboo_repository_name=Jalview Git\nbamboo_build_commandline_org_jfrog_bamboo_bamboo_artifactory_plugin_artifactoryGradleTask_2=/home/bamboo/buildtools/gradle/bin/gradle -x test -PCHANNEL=DEVELOP -PJAVA_VERSION=11 -Pbamboo_planKey=JB-GDI clean shadowJar installers\nbamboo_dependenciesDisabled=false\nbamboo_buildFailed=false\nbamboo_capability_system_jdk_OpenJDK_8=/home/bamboo/buildtools/jdk/jdk-8-linux-x64/jdk\nbamboo_repository_24707249_revision_number=e6e897ddf845d4e79ff5e6c7afddf66766c7d31d\nbamboo_planRepository_branch=develop\nbamboo_agentWorkingDirectory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609\nbamboo_capability_system_git_executable=/bin/git\nbamboo_repository_git_username=\nbamboo_planRepository_1_previousRevision=11346f873e4ecb2d191499fd1d52b8de07a65bf3\nbamboo_planRepository_branchDisplayName=develop\nbamboo_planRepository_1_type=gitv2\nbamboo_planRepository_branchName=develop\nbamboo_capability_system_builder_ant_j11_x11_Ant=/home/bamboo/buildtools/j11/x11-ant-j11\nbamboo_capability_system_builderivy_Ivy=/usr\nbamboo_plan_storageTag=plan-24510817\nbamboo_capability_system_builder_gradle_Gradle=/home/bamboo/buildtools/gradle\nbamboo_hg_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_hg-repositories-cache\nbamboo_planRepository_1_username=\nbamboo_planRepository_type=gitv2\nbamboo_git_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_git-repositories-cache\nbamboo_ManualBuildTriggerReason_userName=Soares\nbamboo_repository_git_repositoryUrl=http://source.jalview.org/git/jalview.git\nbamboo_repository_24707249_previous_revision_number=11346f873e4ecb2d191499fd1d52b8de07a65bf3\nbamboo_repository_24707249_branch_name=develop\nbamboo_capability_system_builder_ant_Ant=/usr/share/ant\nbamboo_capability_system_builder_mvn3_Maven_3=/usr/share/maven\nbamboo_tmp_directory=/srv/bamboo/bamboo-home/temp\nbamboo_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDI-JOB1\nbamboo_planKey=JB-GDI\nbamboo_planRepository_1_repositoryUrl=http://source.jalview.org/git/jalview.git\nbamboo_planRepository_username=\nbamboo_repository_24707249_git_branch=develop\nbamboo_planRepository_1_branchName=develop\n
build	20-Feb-2023 12:46:48	installers/
build	20-Feb-2023 12:46:48	installers/11/
build	20-Feb-2023 12:46:48	installers/11/jalview_develop-2_11_3_0-d20230220-linux-aarch64-java_11.sh
build	20-Feb-2023 12:46:50	installers/11/jalview_develop-2_11_3_0-d20230220-unix-java_11.tar.gz
build	20-Feb-2023 12:46:52	installers/11/sha256sums
build	20-Feb-2023 12:46:52	installers/11/Jalview_Develop-2_11_3_0-d20230220-windows-x64-java_11.exe
build	20-Feb-2023 12:46:55	installers/11/md5sums
build	20-Feb-2023 12:46:55	installers/11/output.txt
build	20-Feb-2023 12:46:55	installers/11/jalview_develop-2_11_3_0-d20230220-linux-x64-java_11.sh
build	20-Feb-2023 12:46:58	installers/11/Jalview_Develop-2_11_3_0-d20230220-macOS-aarch64-macos-java_11.dmg
build	20-Feb-2023 12:47:01	installers/11/jalview_develop-2_11_3_0-d20230220-unix-java_11.sh
build	20-Feb-2023 12:47:02	installers/11/updates.xml
build	20-Feb-2023 12:47:02	installers/11/Jalview_Develop-2_11_3_0-d20230220-macOS-x64-macos-java_11.dmg
simple	20-Feb-2023 12:47:05	Finished task 'Create tar of DEVELOP channel installers' with result: Success
simple	20-Feb-2023 12:47:05	Running post build plugin 'NCover Results Collector'
simple	20-Feb-2023 12:47:05	Running post build plugin 'Artifact Copier'
simple	20-Feb-2023 12:47:05	Publishing an artifact: develop_installers_tar
simple	20-Feb-2023 12:47:07	Finished publishing of artifact Shared artifact: [develop_installers_tar], pattern: [develop_installers.tgz] anchored at: [build] in 1.821 s
simple	20-Feb-2023 12:47:07	Running post build plugin 'Artifactory Release Management Staging'
simple	20-Feb-2023 12:47:07	Running post build plugin 'Artifactory Build Info Copier'
simple	20-Feb-2023 12:47:07	Running post build plugin 'Artifactory Gradle Properties Info Copier'
simple	20-Feb-2023 12:47:07	Running post build plugin 'npm Cache Cleanup'
simple	20-Feb-2023 12:47:07	Running post build plugin 'Clover Results Collector'
simple	20-Feb-2023 12:47:07	Running post build plugin 'Docker Container Cleanup'
simple	20-Feb-2023 12:47:07	Finalising the build...
simple	20-Feb-2023 12:47:07	Stopping timer.
simple	20-Feb-2023 12:47:07	Build JB-GDI-JOB1-11 completed.
simple	20-Feb-2023 12:47:07	Running on server: post build plugin 'NCover Results Collector'
simple	20-Feb-2023 12:47:07	Running on server: post build plugin 'Build Hanging Detection Configuration'
simple	20-Feb-2023 12:47:07	Running on server: post build plugin 'Clover Delta Calculator'
simple	20-Feb-2023 12:47:07	Running on server: post build plugin 'Maven Dependencies Postprocessor'
simple	20-Feb-2023 12:47:07	All post build plugins have finished
simple	20-Feb-2023 12:47:07	Generating build results summary...
simple	20-Feb-2023 12:47:07	Saving build results to disk...
simple	20-Feb-2023 12:47:07	Logging substituted variables...
simple	20-Feb-2023 12:47:07	Indexing build results...
simple	20-Feb-2023 12:47:07	Finished building JB-GDI-JOB1-11.