Build #1

Run build and tests with stdout and sterr

Build: #1 did not complete

Job: Clover and Tests did not complete

Stages & jobs

  1. Default Stage

Build log

The build generated 67 lines of output. Download or view full build log

02-Oct-2025 12:52:07 Build Jalview Builds - Gradle Develop Build Tests with outputs - Clover and Tests #1 (JB-GDBTWO-JOB1-1) started building on agent Default Agent
02-Oct-2025 12:52:07
02-Oct-2025 12:52:07 Build working directory is /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDBTWO-JOB1
02-Oct-2025 12:52:07 Executing build Jalview Builds - Gradle Develop Build Tests with outputs - Clover and Tests #1 (JB-GDBTWO-JOB1-1)
02-Oct-2025 12:52:07 Starting task 'Checkout Default Repository' of type 'com.atlassian.bamboo.plugins.vcs:task.vcs.checkout'
02-Oct-2025 12:52:07 Checking out into /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDBTWO-JOB1
02-Oct-2025 12:52:07 Updating source code to revision: 87afc897f4ab4cf704d7e1c000421e81e0464919
02-Oct-2025 12:52:07 Fetching 'refs/heads/main' from 'https://gitlab.jalview.org/jalview/jalview.git'.
02-Oct-2025 12:52:07 Checking out revision 87afc897f4ab4cf704d7e1c000421e81e0464919.
02-Oct-2025 12:52:07 Creating local git repository in '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDBTWO-JOB1/.git'.
02-Oct-2025 12:52:07 Cloning into '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDBTWO-JOB1'...
02-Oct-2025 12:52:07 done.
02-Oct-2025 12:52:14
Request to stop 'JB-GDBTWO-JOB1-1' received from jprocter
02-Oct-2025 12:52:14 Task was canceled - 'Checkout Default Repository(1)' of type com.atlassian.bamboo.plugins.vcs:task.vcs.checkout.
02-Oct-2025 12:52:14 Failed to prepare the build 'Jalview Builds - Gradle Develop Build Tests with outputs - Clover and Tests #1 (JB-GDBTWO-JOB1-1)'
02-Oct-2025 12:52:14 Starting task 'Clover Report' of type 'org.jfrog.bamboo.bamboo-artifactory-plugin:artifactoryGradleTask'
02-Oct-2025 12:52:14 Bamboo Artifactory Plugin version: 2.6.2
02-Oct-2025 12:52:14
Beginning to execute external process for build 'Jalview Builds - Gradle Develop Build Tests with outputs - Clover and Tests #1 (JB-GDBTWO-JOB1-1)'
... running command line:
/home/bamboo/buildtools/x11-gradle/bin/gradle --no-daemon -Pclover=true -PJAVA_VERSION=11 cloverReport
... in: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDBTWO-JOB1
... using extra environment variables:
bamboo_planRepository_1_branch=main
bamboo_capability_system_builder_maven_Artifactory_Maven_3=/usr
CATALINA_PID=/home/bamboo/latest/work/bamboo.pid
bamboo_planRepository_1_branchDisplayName=main
bamboo_resultsUrl=https://builds.jalview.org/browse/JB-GDBTWO-JOB1-1
JAVA_OPTS=-Xms512m -Xmx1024m -Dbamboo.home=/srv/bamboo/bamboo-home -Djdk.tls.ephemeralDHKeySize=2048
bamboo_build_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDBTWO-JOB1
bamboo_planRepository_1_name=Jalview Gitlab
bamboo_buildKey=JB-GDBTWO-JOB1
bamboo_shortPlanName=Gradle Develop Build Tests with outputs
bamboo_planRepository_name=Jalview Gitlab
LOGNAME=bamboo
bamboo_buildNumber=1
PWD=/
bamboo_capability_system_builder_command_Eclipse_2019_09=/home/bamboo/buildtools/eclipse/jee-2019-09/eclipse/eclipse
bamboo_shortJobName=Clover and Tests
bamboo_buildResultsUrl=https://builds.jalview.org/browse/JB-GDBTWO-JOB1-1
bamboo_planRepository_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git
SHELL=/bin/bash
bamboo_agentId=196609
bamboo_planName=Jalview Builds - Gradle Develop Build Tests with outputs
bamboo_shortPlanKey=GDBTWO
bamboo_shortJobKey=JOB1
bamboo_capability_system_jdk_OpenJDK_11=/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk
bamboo_planRepository_revision=87afc897f4ab4cf704d7e1c000421e81e0464919
bamboo_buildTimeStamp=2025-10-02T12:52:07.646+01:00
bamboo_buildResultKey=JB-GDBTWO-JOB1-1
bamboo_buildPlanName=Jalview Builds - Gradle Develop Build Tests with outputs - Clover and Tests
bamboo_capability_system_builder_ant_j11_Ant=/home/bamboo/buildtools/j11/ant-j11
bamboo_planRepository_1_revision=87afc897f4ab4cf704d7e1c000421e81e0464919
SHLVL=1
bamboo_capability_system_builder_ant_x11_Ant=/home/bamboo/buildtools/x11-ant
JAVA_HOME=/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/
LANG=en_GB.UTF-8
bamboo_buildFailed=false
bamboo_capability_system_jdk_OpenJDK_8=/home/bamboo/buildtools/jdk/jdk-8-linux-x64/jdk
bamboo_planRepository_branch=main
bamboo_agentWorkingDirectory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609
bamboo_capability_system_git_executable=/bin/git
bamboo_planRepository_branchDisplayName=main
bamboo_planRepository_1_type=gitv2
bamboo_planRepository_branchName=main
_=/usr/bin/java
bamboo_capability_system_builder_ant_j11_x11_Ant=/home/bamboo/buildtools/j11/x11-ant-j11
bamboo_capability_system_builderivy_Ivy=/usr
bamboo_plan_storageTag=plan-46302553
bamboo_capability_system_builder_gradle_Gradle=/home/bamboo/buildtools/gradle
bamboo_hg_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_hg-repositories-cache
bamboo_planRepository_1_username=
bamboo_planRepository_type=gitv2
USER=bamboo
bamboo_git_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_git-repositories-cache
bamboo_capability_system_builder_ant_Ant=/usr/share/ant
bamboo_capability_system_builder_mvn3_Maven_3=/usr/share/maven
bamboo_tmp_directory=/srv/bamboo/bamboo-home/temp
bamboo_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDBTWO-JOB1
bamboo_planKey=JB-GDBTWO
bamboo_planRepository_1_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git
bamboo_planRepository_username=
HOME=/home/bamboo
bamboo_planRepository_1_branchName=main
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin
02-Oct-2025 12:52:14 444
02-Oct-2025 12:52:20
02-Oct-2025 12:52:20 > Configure project :
02-Oct-2025 12:52:20 Using properties from file './utils/channels/default/channel_gradle.properties'
02-Oct-2025 12:52:20 JALVIEW_VERSION is set to '2.11.5.0'
02-Oct-2025 12:52:20 HEADLESS BUILD
02-Oct-2025 12:52:20 J2S ENABLED
02-Oct-2025 12:52:20 Using a LOCAL profile.
02-Oct-2025 12:52:21
02-Oct-2025 12:52:21 Deprecated Gradle features were used in this build, making it incompatible with Gradle 8.0.
02-Oct-2025 12:52:21
02-Oct-2025 12:52:21 You can use '--warning-mode all' to show the individual deprecation warnings and determine if they come from your own scripts or plugins.
02-Oct-2025 12:52:21
02-Oct-2025 12:52:21 See https://docs.gradle.org/7.4.2/userguide/command_line_interface.html#sec:command_line_warnings
02-Oct-2025 12:52:21
02-Oct-2025 12:52:21 FAILURE: Build failed with an exception.
02-Oct-2025 12:52:21
02-Oct-2025 12:52:21 * Where:
02-Oct-2025 12:52:21 Build file '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDBTWO-JOB1/build.gradle' line: 2117
02-Oct-2025 12:52:21
02-Oct-2025 12:52:21 * What went wrong:
02-Oct-2025 12:52:21 A problem occurred evaluating root project 'jalview'.
02-Oct-2025 12:52:21 > Could not import Ant build file '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDBTWO-JOB1/utils/publishHelp.xml'.
02-Oct-2025 12:52:21
02-Oct-2025 12:52:21 * Try:
02-Oct-2025 12:52:21 > Run with --stacktrace option to get the stack trace.
02-Oct-2025 12:52:21 > Run with --info or --debug option to get more log output.
02-Oct-2025 12:52:21 > Run with --scan to get full insights.
02-Oct-2025 12:52:21
02-Oct-2025 12:52:21 * Get more help at https://help.gradle.org
02-Oct-2025 12:52:21
02-Oct-2025 12:52:21 BUILD FAILED in 6s
02-Oct-2025 12:52:22
02-Oct-2025 12:52:22 Failing task since return code of [/home/bamboo/buildtools/x11-gradle/bin/gradle --no-daemon -Pclover=true -PJAVA_VERSION=11 cloverReport] was 1 while expected 0
02-Oct-2025 12:52:22 Finished task 'Clover Report' with result: Failed
02-Oct-2025 12:52:22 Starting task 'TestNG Parser' of type 'com.atlassian.bamboo.plugins.testresultparser:task.testresultparser.testng'
02-Oct-2025 12:52:22 Parsing test results under /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDBTWO-JOB1...
02-Oct-2025 12:52:22 Failing task since test cases were expected but none were found.
02-Oct-2025 12:52:22 Finished task 'TestNG Parser' with result: Failed
02-Oct-2025 12:52:22 Running on server: post build plugin 'NCover Results Collector'
02-Oct-2025 12:52:22 Running on server: post build plugin 'Build Hanging Detection Configuration'
02-Oct-2025 12:52:22 Running on server: post build plugin 'Clover Delta Calculator'
02-Oct-2025 12:52:22 Running on server: post build plugin 'Maven Dependencies Postprocessor'
02-Oct-2025 12:52:22 All post build plugins have finished
02-Oct-2025 12:52:22 Generating build results summary...
02-Oct-2025 12:52:22 Saving build results to disk...
02-Oct-2025 12:52:22 Logging substituted variables...
02-Oct-2025 12:52:22 Indexing build results...
02-Oct-2025 12:52:22 Finished building JB-GDBTWO-JOB1-1.