Run build and tests with stdout and sterr
Build: #1 did not complete
Job: Clover and Tests did not complete
Build log
The build generated 67 lines of output. Download or view full build log
| 02-Oct-2025 12:52:07 | Build Jalview Builds - Gradle Develop Build Tests with outputs - Clover and Tests #1 (JB-GDBTWO-JOB1-1) started building on agent Default Agent |
| 02-Oct-2025 12:52:07 | |
| 02-Oct-2025 12:52:07 | Build working directory is /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDBTWO-JOB1 |
| 02-Oct-2025 12:52:07 | Executing build Jalview Builds - Gradle Develop Build Tests with outputs - Clover and Tests #1 (JB-GDBTWO-JOB1-1) |
| 02-Oct-2025 12:52:07 | Starting task 'Checkout Default Repository' of type 'com.atlassian.bamboo.plugins.vcs:task.vcs.checkout' |
| 02-Oct-2025 12:52:07 | Checking out into /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDBTWO-JOB1 |
| 02-Oct-2025 12:52:07 | Updating source code to revision: 87afc897f4ab4cf704d7e1c000421e81e0464919 |
| 02-Oct-2025 12:52:07 | Fetching 'refs/heads/main' from 'https://gitlab.jalview.org/jalview/jalview.git'. |
| 02-Oct-2025 12:52:07 | Checking out revision 87afc897f4ab4cf704d7e1c000421e81e0464919. |
| 02-Oct-2025 12:52:07 | Creating local git repository in '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDBTWO-JOB1/.git'. |
| 02-Oct-2025 12:52:07 | Cloning into '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDBTWO-JOB1'... |
| 02-Oct-2025 12:52:07 | done. |
| 02-Oct-2025 12:52:14 | Request to stop 'JB-GDBTWO-JOB1-1' received from jprocter |
| 02-Oct-2025 12:52:14 | Task was canceled - 'Checkout Default Repository(1)' of type com.atlassian.bamboo.plugins.vcs:task.vcs.checkout. |
| 02-Oct-2025 12:52:14 | Failed to prepare the build 'Jalview Builds - Gradle Develop Build Tests with outputs - Clover and Tests #1 (JB-GDBTWO-JOB1-1)' |
| 02-Oct-2025 12:52:14 | Starting task 'Clover Report' of type 'org.jfrog.bamboo.bamboo-artifactory-plugin:artifactoryGradleTask' |
| 02-Oct-2025 12:52:14 | Bamboo Artifactory Plugin version: 2.6.2 |
| 02-Oct-2025 12:52:14 | Beginning to execute external process for build 'Jalview Builds - Gradle Develop Build Tests with outputs - Clover and Tests #1 (JB-GDBTWO-JOB1-1)' ... running command line: /home/bamboo/buildtools/x11-gradle/bin/gradle --no-daemon -Pclover=true -PJAVA_VERSION=11 cloverReport ... in: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDBTWO-JOB1 ... using extra environment variables: bamboo_planRepository_1_branch=main bamboo_capability_system_builder_maven_Artifactory_Maven_3=/usr CATALINA_PID=/home/bamboo/latest/work/bamboo.pid bamboo_planRepository_1_branchDisplayName=main bamboo_resultsUrl=https://builds.jalview.org/browse/JB-GDBTWO-JOB1-1 JAVA_OPTS=-Xms512m -Xmx1024m -Dbamboo.home=/srv/bamboo/bamboo-home -Djdk.tls.ephemeralDHKeySize=2048 bamboo_build_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDBTWO-JOB1 bamboo_planRepository_1_name=Jalview Gitlab bamboo_buildKey=JB-GDBTWO-JOB1 bamboo_shortPlanName=Gradle Develop Build Tests with outputs bamboo_planRepository_name=Jalview Gitlab LOGNAME=bamboo bamboo_buildNumber=1 PWD=/ bamboo_capability_system_builder_command_Eclipse_2019_09=/home/bamboo/buildtools/eclipse/jee-2019-09/eclipse/eclipse bamboo_shortJobName=Clover and Tests bamboo_buildResultsUrl=https://builds.jalview.org/browse/JB-GDBTWO-JOB1-1 bamboo_planRepository_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git SHELL=/bin/bash bamboo_agentId=196609 bamboo_planName=Jalview Builds - Gradle Develop Build Tests with outputs bamboo_shortPlanKey=GDBTWO bamboo_shortJobKey=JOB1 bamboo_capability_system_jdk_OpenJDK_11=/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk bamboo_planRepository_revision=87afc897f4ab4cf704d7e1c000421e81e0464919 bamboo_buildTimeStamp=2025-10-02T12:52:07.646+01:00 bamboo_buildResultKey=JB-GDBTWO-JOB1-1 bamboo_buildPlanName=Jalview Builds - Gradle Develop Build Tests with outputs - Clover and Tests bamboo_capability_system_builder_ant_j11_Ant=/home/bamboo/buildtools/j11/ant-j11 bamboo_planRepository_1_revision=87afc897f4ab4cf704d7e1c000421e81e0464919 SHLVL=1 bamboo_capability_system_builder_ant_x11_Ant=/home/bamboo/buildtools/x11-ant JAVA_HOME=/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/ LANG=en_GB.UTF-8 bamboo_buildFailed=false bamboo_capability_system_jdk_OpenJDK_8=/home/bamboo/buildtools/jdk/jdk-8-linux-x64/jdk bamboo_planRepository_branch=main bamboo_agentWorkingDirectory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609 bamboo_capability_system_git_executable=/bin/git bamboo_planRepository_branchDisplayName=main bamboo_planRepository_1_type=gitv2 bamboo_planRepository_branchName=main _=/usr/bin/java bamboo_capability_system_builder_ant_j11_x11_Ant=/home/bamboo/buildtools/j11/x11-ant-j11 bamboo_capability_system_builderivy_Ivy=/usr bamboo_plan_storageTag=plan-46302553 bamboo_capability_system_builder_gradle_Gradle=/home/bamboo/buildtools/gradle bamboo_hg_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_hg-repositories-cache bamboo_planRepository_1_username= bamboo_planRepository_type=gitv2 USER=bamboo bamboo_git_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_git-repositories-cache bamboo_capability_system_builder_ant_Ant=/usr/share/ant bamboo_capability_system_builder_mvn3_Maven_3=/usr/share/maven bamboo_tmp_directory=/srv/bamboo/bamboo-home/temp bamboo_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDBTWO-JOB1 bamboo_planKey=JB-GDBTWO bamboo_planRepository_1_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git bamboo_planRepository_username= HOME=/home/bamboo bamboo_planRepository_1_branchName=main PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin |
| 02-Oct-2025 12:52:14 | 444 |
| 02-Oct-2025 12:52:20 | |
| 02-Oct-2025 12:52:20 | > Configure project : |
| 02-Oct-2025 12:52:20 | Using properties from file './utils/channels/default/channel_gradle.properties' |
| 02-Oct-2025 12:52:20 | JALVIEW_VERSION is set to '2.11.5.0' |
| 02-Oct-2025 12:52:20 | HEADLESS BUILD |
| 02-Oct-2025 12:52:20 | J2S ENABLED |
| 02-Oct-2025 12:52:20 | Using a LOCAL profile. |
| 02-Oct-2025 12:52:21 | |
| 02-Oct-2025 12:52:21 | Deprecated Gradle features were used in this build, making it incompatible with Gradle 8.0. |
| 02-Oct-2025 12:52:21 | |
| 02-Oct-2025 12:52:21 | You can use '--warning-mode all' to show the individual deprecation warnings and determine if they come from your own scripts or plugins. |
| 02-Oct-2025 12:52:21 | |
| 02-Oct-2025 12:52:21 | See https://docs.gradle.org/7.4.2/userguide/command_line_interface.html#sec:command_line_warnings |
| 02-Oct-2025 12:52:21 | |
| 02-Oct-2025 12:52:21 | FAILURE: Build failed with an exception. |
| 02-Oct-2025 12:52:21 | |
| 02-Oct-2025 12:52:21 | * Where: |
| 02-Oct-2025 12:52:21 | Build file '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDBTWO-JOB1/build.gradle' line: 2117 |
| 02-Oct-2025 12:52:21 | |
| 02-Oct-2025 12:52:21 | * What went wrong: |
| 02-Oct-2025 12:52:21 | A problem occurred evaluating root project 'jalview'. |
| 02-Oct-2025 12:52:21 | > Could not import Ant build file '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDBTWO-JOB1/utils/publishHelp.xml'. |
| 02-Oct-2025 12:52:21 | |
| 02-Oct-2025 12:52:21 | * Try: |
| 02-Oct-2025 12:52:21 | > Run with --stacktrace option to get the stack trace. |
| 02-Oct-2025 12:52:21 | > Run with --info or --debug option to get more log output. |
| 02-Oct-2025 12:52:21 | > Run with --scan to get full insights. |
| 02-Oct-2025 12:52:21 | |
| 02-Oct-2025 12:52:21 | * Get more help at https://help.gradle.org |
| 02-Oct-2025 12:52:21 | |
| 02-Oct-2025 12:52:21 | BUILD FAILED in 6s |
| 02-Oct-2025 12:52:22 | |
| 02-Oct-2025 12:52:22 | Failing task since return code of [/home/bamboo/buildtools/x11-gradle/bin/gradle --no-daemon -Pclover=true -PJAVA_VERSION=11 cloverReport] was 1 while expected 0 |
| 02-Oct-2025 12:52:22 | Finished task 'Clover Report' with result: Failed |
| 02-Oct-2025 12:52:22 | Starting task 'TestNG Parser' of type 'com.atlassian.bamboo.plugins.testresultparser:task.testresultparser.testng' |
| 02-Oct-2025 12:52:22 | Parsing test results under /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDBTWO-JOB1... |
| 02-Oct-2025 12:52:22 | Failing task since test cases were expected but none were found. |
| 02-Oct-2025 12:52:22 | Finished task 'TestNG Parser' with result: Failed |
| 02-Oct-2025 12:52:22 | Running on server: post build plugin 'NCover Results Collector' |
| 02-Oct-2025 12:52:22 | Running on server: post build plugin 'Build Hanging Detection Configuration' |
| 02-Oct-2025 12:52:22 | Running on server: post build plugin 'Clover Delta Calculator' |
| 02-Oct-2025 12:52:22 | Running on server: post build plugin 'Maven Dependencies Postprocessor' |
| 02-Oct-2025 12:52:22 | All post build plugins have finished |
| 02-Oct-2025 12:52:22 | Generating build results summary... |
| 02-Oct-2025 12:52:22 | Saving build results to disk... |
| 02-Oct-2025 12:52:22 | Logging substituted variables... |
| 02-Oct-2025 12:52:22 | Indexing build results... |
| 02-Oct-2025 12:52:22 | Finished building JB-GDBTWO-JOB1-1. |