simple	02-Oct-2025 12:52:07	Build Jalview Builds - Gradle Develop Build Tests with outputs - Clover and Tests #1 (JB-GDBTWO-JOB1-1) started building on agent Default Agent
simple	02-Oct-2025 12:52:07	
simple	02-Oct-2025 12:52:07	Build working directory is /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDBTWO-JOB1
simple	02-Oct-2025 12:52:07	Executing build Jalview Builds - Gradle Develop Build Tests with outputs - Clover and Tests #1 (JB-GDBTWO-JOB1-1)
simple	02-Oct-2025 12:52:07	Starting task 'Checkout Default Repository' of type 'com.atlassian.bamboo.plugins.vcs:task.vcs.checkout'
simple	02-Oct-2025 12:52:07	Checking out into /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDBTWO-JOB1
simple	02-Oct-2025 12:52:07	Updating source code to revision: 87afc897f4ab4cf704d7e1c000421e81e0464919
simple	02-Oct-2025 12:52:07	Fetching 'refs/heads/main' from 'https://gitlab.jalview.org/jalview/jalview.git'.
simple	02-Oct-2025 12:52:07	Checking out revision 87afc897f4ab4cf704d7e1c000421e81e0464919.
simple	02-Oct-2025 12:52:07	Creating local git repository in '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDBTWO-JOB1/.git'.
simple	02-Oct-2025 12:52:07	Cloning into '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDBTWO-JOB1'...
simple	02-Oct-2025 12:52:07	done.
command	02-Oct-2025 12:52:14	Request to stop 'JB-GDBTWO-JOB1-1' received from jprocter
simple	02-Oct-2025 12:52:14	Task was canceled - 'Checkout Default Repository(1)' of type com.atlassian.bamboo.plugins.vcs:task.vcs.checkout.
error	02-Oct-2025 12:52:14	Failed to prepare the build 'Jalview Builds - Gradle Develop Build Tests with outputs - Clover and Tests #1 (JB-GDBTWO-JOB1-1)'
simple	02-Oct-2025 12:52:14	Starting task 'Clover Report' of type 'org.jfrog.bamboo.bamboo-artifactory-plugin:artifactoryGradleTask'
simple	02-Oct-2025 12:52:14	Bamboo Artifactory Plugin version: 2.6.2
command	02-Oct-2025 12:52:14	Beginning to execute external process for build 'Jalview Builds - Gradle Develop Build Tests with outputs - Clover and Tests #1 (JB-GDBTWO-JOB1-1)'\n ... running command line: \n/home/bamboo/buildtools/x11-gradle/bin/gradle --no-daemon -Pclover=true -PJAVA_VERSION=11 cloverReport\n ... in: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDBTWO-JOB1\n ... using extra environment variables: \nbamboo_planRepository_1_branch=main\nbamboo_capability_system_builder_maven_Artifactory_Maven_3=/usr\nCATALINA_PID=/home/bamboo/latest/work/bamboo.pid\nbamboo_planRepository_1_branchDisplayName=main\nbamboo_resultsUrl=https://builds.jalview.org/browse/JB-GDBTWO-JOB1-1\nJAVA_OPTS=-Xms512m -Xmx1024m    -Dbamboo.home=/srv/bamboo/bamboo-home -Djdk.tls.ephemeralDHKeySize=2048\nbamboo_build_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDBTWO-JOB1\nbamboo_planRepository_1_name=Jalview Gitlab\nbamboo_buildKey=JB-GDBTWO-JOB1\nbamboo_shortPlanName=Gradle Develop Build Tests with outputs\nbamboo_planRepository_name=Jalview Gitlab\nLOGNAME=bamboo\nbamboo_buildNumber=1\nPWD=/\nbamboo_capability_system_builder_command_Eclipse_2019_09=/home/bamboo/buildtools/eclipse/jee-2019-09/eclipse/eclipse\nbamboo_shortJobName=Clover and Tests\nbamboo_buildResultsUrl=https://builds.jalview.org/browse/JB-GDBTWO-JOB1-1\nbamboo_planRepository_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git\nSHELL=/bin/bash\nbamboo_agentId=196609\nbamboo_planName=Jalview Builds - Gradle Develop Build Tests with outputs\nbamboo_shortPlanKey=GDBTWO\nbamboo_shortJobKey=JOB1\nbamboo_capability_system_jdk_OpenJDK_11=/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk\nbamboo_planRepository_revision=87afc897f4ab4cf704d7e1c000421e81e0464919\nbamboo_buildTimeStamp=2025-10-02T12:52:07.646+01:00\nbamboo_buildResultKey=JB-GDBTWO-JOB1-1\nbamboo_buildPlanName=Jalview Builds - Gradle Develop Build Tests with outputs - Clover and Tests\nbamboo_capability_system_builder_ant_j11_Ant=/home/bamboo/buildtools/j11/ant-j11\nbamboo_planRepository_1_revision=87afc897f4ab4cf704d7e1c000421e81e0464919\nSHLVL=1\nbamboo_capability_system_builder_ant_x11_Ant=/home/bamboo/buildtools/x11-ant\nJAVA_HOME=/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/\nLANG=en_GB.UTF-8\nbamboo_buildFailed=false\nbamboo_capability_system_jdk_OpenJDK_8=/home/bamboo/buildtools/jdk/jdk-8-linux-x64/jdk\nbamboo_planRepository_branch=main\nbamboo_agentWorkingDirectory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609\nbamboo_capability_system_git_executable=/bin/git\nbamboo_planRepository_branchDisplayName=main\nbamboo_planRepository_1_type=gitv2\nbamboo_planRepository_branchName=main\n_=/usr/bin/java\nbamboo_capability_system_builder_ant_j11_x11_Ant=/home/bamboo/buildtools/j11/x11-ant-j11\nbamboo_capability_system_builderivy_Ivy=/usr\nbamboo_plan_storageTag=plan-46302553\nbamboo_capability_system_builder_gradle_Gradle=/home/bamboo/buildtools/gradle\nbamboo_hg_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_hg-repositories-cache\nbamboo_planRepository_1_username=\nbamboo_planRepository_type=gitv2\nUSER=bamboo\nbamboo_git_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_git-repositories-cache\nbamboo_capability_system_builder_ant_Ant=/usr/share/ant\nbamboo_capability_system_builder_mvn3_Maven_3=/usr/share/maven\nbamboo_tmp_directory=/srv/bamboo/bamboo-home/temp\nbamboo_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDBTWO-JOB1\nbamboo_planKey=JB-GDBTWO\nbamboo_planRepository_1_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git\nbamboo_planRepository_username=\nHOME=/home/bamboo\nbamboo_planRepository_1_branchName=main\nPATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin\n
build	02-Oct-2025 12:52:14	444
build	02-Oct-2025 12:52:20	
build	02-Oct-2025 12:52:20	> Configure project :
build	02-Oct-2025 12:52:20	Using properties from file './utils/channels/default/channel_gradle.properties'
build	02-Oct-2025 12:52:20	JALVIEW_VERSION is set to '2.11.5.0'
build	02-Oct-2025 12:52:20	HEADLESS BUILD
build	02-Oct-2025 12:52:20	J2S ENABLED
build	02-Oct-2025 12:52:20	Using a LOCAL profile.
build	02-Oct-2025 12:52:21	
build	02-Oct-2025 12:52:21	Deprecated Gradle features were used in this build, making it incompatible with Gradle 8.0.
build	02-Oct-2025 12:52:21	
build	02-Oct-2025 12:52:21	You can use '--warning-mode all' to show the individual deprecation warnings and determine if they come from your own scripts or plugins.
build	02-Oct-2025 12:52:21	
build	02-Oct-2025 12:52:21	See https://docs.gradle.org/7.4.2/userguide/command_line_interface.html#sec:command_line_warnings
error	02-Oct-2025 12:52:21	
error	02-Oct-2025 12:52:21	FAILURE: Build failed with an exception.
error	02-Oct-2025 12:52:21	
error	02-Oct-2025 12:52:21	* Where:
error	02-Oct-2025 12:52:21	Build file '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDBTWO-JOB1/build.gradle' line: 2117
error	02-Oct-2025 12:52:21	
error	02-Oct-2025 12:52:21	* What went wrong:
error	02-Oct-2025 12:52:21	A problem occurred evaluating root project 'jalview'.
error	02-Oct-2025 12:52:21	> Could not import Ant build file '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDBTWO-JOB1/utils/publishHelp.xml'.
error	02-Oct-2025 12:52:21	
error	02-Oct-2025 12:52:21	* Try:
error	02-Oct-2025 12:52:21	> Run with --stacktrace option to get the stack trace.
error	02-Oct-2025 12:52:21	> Run with --info or --debug option to get more log output.
error	02-Oct-2025 12:52:21	> Run with --scan to get full insights.
error	02-Oct-2025 12:52:21	
error	02-Oct-2025 12:52:21	* Get more help at https://help.gradle.org
error	02-Oct-2025 12:52:21	
error	02-Oct-2025 12:52:21	BUILD FAILED in 6s
simple	02-Oct-2025 12:52:22	
simple	02-Oct-2025 12:52:22	Failing task since return code of [/home/bamboo/buildtools/x11-gradle/bin/gradle --no-daemon -Pclover=true -PJAVA_VERSION=11 cloverReport] was 1 while expected 0
simple	02-Oct-2025 12:52:22	Finished task 'Clover Report' with result: Failed
simple	02-Oct-2025 12:52:22	Starting task 'TestNG Parser' of type 'com.atlassian.bamboo.plugins.testresultparser:task.testresultparser.testng'
simple	02-Oct-2025 12:52:22	Parsing test results under /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDBTWO-JOB1...
simple	02-Oct-2025 12:52:22	Failing task since test cases were expected but none were found.
simple	02-Oct-2025 12:52:22	Finished task 'TestNG Parser' with result: Failed
simple	02-Oct-2025 12:52:22	Running on server: post build plugin 'NCover Results Collector'
simple	02-Oct-2025 12:52:22	Running on server: post build plugin 'Build Hanging Detection Configuration'
simple	02-Oct-2025 12:52:22	Running on server: post build plugin 'Clover Delta Calculator'
simple	02-Oct-2025 12:52:22	Running on server: post build plugin 'Maven Dependencies Postprocessor'
simple	02-Oct-2025 12:52:22	All post build plugins have finished
simple	02-Oct-2025 12:52:22	Generating build results summary...
simple	02-Oct-2025 12:52:22	Saving build results to disk...
simple	02-Oct-2025 12:52:22	Logging substituted variables...
simple	02-Oct-2025 12:52:22	Indexing build results...
simple	02-Oct-2025 12:52:22	Finished building JB-GDBTWO-JOB1-1.