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package jalview.ws.dbsources; |
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import jalview.bin.Cache; |
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import jalview.datamodel.DBRefSource; |
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import com.stevesoft.pat.Regex; |
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@author |
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| 28.6% |
Uncovered Elements: 10 (14) |
Complexity: 7 |
Complexity Density: 1 |
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abstract public class Pfam extends Xfam |
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{ |
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protected static final String GZIPPED = "/gzipped"; |
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static final String PFAM_BASEURL_KEY = "PFAM_BASEURL"; |
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private static final String DEFAULT_PFAM_BASEURL = "https://pfam.xfam.org"; |
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| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
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public Pfam()... |
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{ |
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super(); |
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} |
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@see |
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| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
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@Override... |
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public String getAccessionSeparator() |
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{ |
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return null; |
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} |
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@see |
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| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
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@Override... |
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public Regex getAccessionValidator() |
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{ |
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return null; |
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} |
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@see |
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@see |
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@see |
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| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
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@Override... |
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public String getDbVersion() |
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{ |
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return null; |
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} |
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| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
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@Override... |
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protected String getURLPrefix() |
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{ |
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return Cache.getDefault(PFAM_BASEURL_KEY, DEFAULT_PFAM_BASEURL); |
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} |
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@see |
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| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
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@Override... |
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public boolean isValidReference(String accession) |
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{ |
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return accession.indexOf("PF") == 0; |
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} |
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| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
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@Override... |
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public String getXfamSource() |
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{ |
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return DBRefSource.PFAM; |
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} |
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} |