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package jalview.io; |
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import static org.testng.AssertJUnit.assertTrue; |
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import jalview.datamodel.SequenceGroup; |
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import jalview.gui.AlignFrame; |
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import jalview.gui.JvOptionPane; |
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import org.testng.annotations.AfterClass; |
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import org.testng.annotations.BeforeClass; |
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import org.testng.annotations.Test; |
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@author |
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| 100% |
Uncovered Elements: 0 (21) |
Complexity: 4 |
Complexity Density: 0.24 |
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public class JalviewExportPropertiesTests |
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{ |
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| 100% |
Uncovered Elements: 0 (2) |
Complexity: 1 |
Complexity Density: 0.5 |
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@BeforeClass(alwaysRun = true)... |
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public void setUpJvOptionPane() |
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{ |
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JvOptionPane.setInteractiveMode(false); |
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JvOptionPane.setMockResponse(JvOptionPane.CANCEL_OPTION); |
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} |
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@throws |
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| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
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@BeforeClass(alwaysRun = true)... |
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public static void setUpBeforeClass() throws Exception |
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{ |
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jalview.bin.Jalview.main(new String[] { "-props", |
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"test/jalview/io/testProps.jvprops" }); |
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} |
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@throws |
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| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
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@AfterClass(alwaysRun = true)... |
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public static void tearDownAfterClass() throws Exception |
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{ |
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jalview.gui.Desktop.instance.closeAll_actionPerformed(null); |
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} |
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| 100% |
Uncovered Elements: 0 (13) |
Complexity: 1 |
Complexity Density: 0.08 |
1PASS
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@Test(groups = { "Functional" })... |
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public void testImportExportPeriodGaps() throws Exception |
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{ |
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jalview.bin.Cache.setProperty("GAP_SYMBOL", "."); |
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assertTrue("Couldn't set gap character to '.'", |
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".".equals("" + jalview.bin.Cache.getProperty("GAP_SYMBOL"))); |
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AlignFrame af = new jalview.io.FileLoader().LoadFileWaitTillLoaded( |
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"examples/uniref50.fa", DataSourceType.FILE); |
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assertTrue("Didn't read in the example file correctly.", af != null); |
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assertTrue("Didn't set the gap character correctly", af.getViewport() |
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.getAlignment().getSequenceAt(0).getCharAt(5) == '.'); |
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SequenceGroup sg = new SequenceGroup(); |
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sg.addSequence(af.getViewport().getAlignment().getSequenceAt(0), false); |
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sg.addSequence(af.getViewport().getAlignment().getSequenceAt(1), false); |
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sg.setStartRes(1); |
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sg.setEndRes(7); |
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af.getViewport().setSelectionGroup(sg); |
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String fseqs = new FormatAdapter(af.alignPanel).formatSequences( |
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FileFormat.Fasta, af.alignPanel, true); |
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assertTrue("Couldn't find '.' in the exported region\n" + fseqs, |
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fseqs.indexOf(".") > -1); |
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} |
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} |