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package jalview.gui; |
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import static org.testng.Assert.assertEquals; |
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import static org.testng.Assert.assertFalse; |
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import static org.testng.Assert.assertNull; |
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import static org.testng.Assert.assertSame; |
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import static org.testng.Assert.assertTrue; |
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import jalview.datamodel.PDBEntry; |
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import jalview.datamodel.PDBEntry.Type; |
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import jalview.datamodel.Sequence; |
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import jalview.datamodel.SequenceI; |
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import java.util.Map; |
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import org.testng.annotations.BeforeClass; |
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import org.testng.annotations.Test; |
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| 100% |
Uncovered Elements: 0 (42) |
Complexity: 3 |
Complexity Density: 0.08 |
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public class StructureViewerTest |
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{ |
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| 100% |
Uncovered Elements: 0 (2) |
Complexity: 1 |
Complexity Density: 0.5 |
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@BeforeClass(alwaysRun = true)... |
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public void setUpJvOptionPane() |
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{ |
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JvOptionPane.setInteractiveMode(false); |
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JvOptionPane.setMockResponse(JvOptionPane.CANCEL_OPTION); |
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} |
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| 100% |
Uncovered Elements: 0 (38) |
Complexity: 2 |
Complexity Density: 0.06 |
1PASS
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@Test(groups = "Functional")... |
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public void testGetSequencesForPdbs() |
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{ |
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StructureViewer sv = new StructureViewer(null); |
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assertNull(sv.getSequencesForPdbs(null, null)); |
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PDBEntry pdbe1 = new PDBEntry("1A70", "A", Type.PDB, "path1"); |
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PDBEntry pdbe2 = new PDBEntry("3A6S", "A", Type.PDB, "path2"); |
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PDBEntry pdbe3 = new PDBEntry("1A70", "B", Type.PDB, "path1"); |
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PDBEntry pdbe4 = new PDBEntry("1GAQ", "A", Type.PDB, null); |
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PDBEntry pdbe5 = new PDBEntry("3A6S", "B", Type.PDB, "path2"); |
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PDBEntry pdbe6 = new PDBEntry("1GAQ", "B", Type.PDB, null); |
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PDBEntry pdbe7 = new PDBEntry("1FOO", "Q", Type.PDB, null); |
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PDBEntry[] pdbs = new PDBEntry[] { pdbe1, pdbe2, pdbe3, pdbe4, pdbe5, |
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pdbe6, pdbe7 }; |
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SequenceI[] seqs = new SequenceI[pdbs.length]; |
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for (int i = 0; i < seqs.length; i++) |
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{ |
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seqs[i] = new Sequence("Seq" + i, "abc"); |
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} |
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Map<PDBEntry, SequenceI[]> uniques = sv.getSequencesForPdbs(pdbs, seqs); |
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assertTrue(uniques.containsKey(pdbe1)); |
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assertTrue(uniques.containsKey(pdbe2)); |
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assertFalse(uniques.containsKey(pdbe3)); |
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assertTrue(uniques.containsKey(pdbe4)); |
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assertFalse(uniques.containsKey(pdbe5)); |
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assertFalse(uniques.containsKey(pdbe6)); |
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assertTrue(uniques.containsKey(pdbe7)); |
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SequenceI[] ss = uniques.get(pdbe1); |
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assertEquals(ss.length, 2); |
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assertSame(seqs[0], ss[0]); |
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assertSame(seqs[2], ss[1]); |
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ss = uniques.get(pdbe2); |
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assertEquals(ss.length, 2); |
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assertSame(seqs[1], ss[0]); |
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assertSame(seqs[4], ss[1]); |
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ss = uniques.get(pdbe4); |
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assertEquals(ss.length, 2); |
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assertSame(seqs[3], ss[0]); |
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assertSame(seqs[5], ss[1]); |
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ss = uniques.get(pdbe7); |
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assertEquals(ss.length, 1); |
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assertSame(seqs[6], ss[0]); |
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} |
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} |