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package jalview.gui; |
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import static org.testng.Assert.assertEquals; |
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import jalview.bin.Jalview; |
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import jalview.datamodel.Alignment; |
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import jalview.datamodel.AlignmentI; |
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import jalview.datamodel.Sequence; |
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import jalview.datamodel.SequenceGroup; |
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import jalview.datamodel.SequenceI; |
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import jalview.renderer.ResidueShader; |
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import jalview.renderer.ResidueShaderI; |
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import jalview.schemes.ZappoColourScheme; |
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import java.awt.Color; |
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import org.testng.annotations.BeforeClass; |
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import org.testng.annotations.BeforeMethod; |
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import org.testng.annotations.Test; |
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| 100% |
Uncovered Elements: 0 (22) |
Complexity: 3 |
Complexity Density: 0.16 |
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public class SequenceRendererTest |
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{ |
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AlignmentI al; |
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AlignViewport av; |
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SequenceI seq1; |
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| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
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@BeforeClass(alwaysRun = true)... |
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public static void setUpBeforeClass() throws Exception |
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{ |
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Jalview.main( |
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new String[] |
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{ "-nonews", "-props", "test/jalview/testProps.jvprops" }); |
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} |
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| 100% |
Uncovered Elements: 0 (7) |
Complexity: 1 |
Complexity Density: 0.14 |
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@BeforeMethod(alwaysRun = true)... |
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public void setUp() |
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{ |
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seq1 = new Sequence("Seq1", "ABCEEEABCABC"); |
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SequenceI seq2 = new Sequence("Seq2", "ABCABCABCABC"); |
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SequenceI seq3 = new Sequence("Seq3", "ABCABCABCABC"); |
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SequenceI[] seqs = new SequenceI[] { seq1, seq2, seq3 }; |
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al = new Alignment(seqs); |
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al.setDataset(null); |
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av = new AlignViewport(al); |
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} |
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| 100% |
Uncovered Elements: 0 (11) |
Complexity: 1 |
Complexity Density: 0.09 |
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@Test(groups = "Functional")... |
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public void testGetResidueColour_WithGroup() |
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{ |
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SequenceRenderer sr = new SequenceRenderer(av); |
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SequenceGroup sg = new SequenceGroup(); |
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sg.addSequence(seq1, false); |
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sg.setStartRes(3); |
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sg.setEndRes(5); |
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ResidueShaderI rs = new ResidueShader(); |
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rs.setColourScheme(new ZappoColourScheme()); |
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sg.setGroupColourScheme(rs); |
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av.getAlignment().addGroup(sg); |
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assertEquals(Color.white, sr.getResidueColour(seq1, 1, null)); |
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assertEquals(Color.red, sr.getResidueColour(seq1, 3, null)); |
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} |
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} |