Classes

Class	Line #	Total Statements	Complexity	TOTAL Coverage	Actions
ChimeraXViewFrame	16	6	6	0.00%	Show methods

Class ChimeraXViewFrame

Class ChimeraXViewFrame	Line # 16	Total Statements 6	Complexity 6	TOTAL Coverage 0.00%
ChimeraXViewFrame(PDBEntry,SequenceI[],String[],AlignmentPanel)   ChimeraXViewFrame(PDBEntry,SequenceI[],String[],AlignmentPanel)	1919	1.01	1.01	0.0 0.00%
ChimeraXViewFrame(PDBEntry[],boolean,SequenceI[][],AlignmentPanel)   ChimeraXViewFrame(PDBEntry[],boolean,SequenceI[][],AlignmentPanel)	2525	1.01	1.01	0.0 0.00%
ChimeraXViewFrame(StructureViewerModel,AlignmentPanel,String,String)   ChimeraXViewFrame(StructureViewerModel,AlignmentPanel,String,String)	3939	1.01	1.01	0.0 0.00%
getViewerType() : ViewerType   getViewerType() : ViewerType	4545	1.01	1.01	0.0 0.00%
getViewerName() : String   getViewerName() : String	5151	1.01	1.01	0.0 0.00%
newBindingModel(AlignmentPanel,PDBEntry[],SequenceI[][]) : JalviewChimeraBindingModel   newBindingModel(AlignmentPanel,PDBEntry[],SequenceI[][]) : JalviewChimeraBindingModel	5757	1.01	1.01	0.0 0.00%

 

Contributing tests

Source view

1		package jalview.gui;
2
3		import jalview.datamodel.PDBEntry;
4		import jalview.datamodel.SequenceI;
5		import jalview.datamodel.StructureViewerModel;
6		import jalview.gui.StructureViewer.ViewerType;
7
8		/**
9		* A class for the gui frame through which Jalview interacts with the ChimeraX
10		* structure viewer. Mostly the same as ChimeraViewFrame with a few overrides
11		* for the differences.
12		*
13		* @author gmcarstairs
14		*
15		*/
		0% Uncovered Elements: 12 (12) Complexity: 6 Complexity Density: 1
16		public class ChimeraXViewFrame extends ChimeraViewFrame
17		{
18
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
19	0	public ChimeraXViewFrame(PDBEntry pdb, SequenceI[] seqsForPdb,...
20		String[] chains, AlignmentPanel ap)
21		{
22	0	super(pdb, seqsForPdb, chains, ap);
23		}
24
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
25	0	public ChimeraXViewFrame(PDBEntry[] pdbsForFile, boolean superposeAdded,...
26		SequenceI[][] theSeqs, AlignmentPanel ap)
27		{
28	0	super(pdbsForFile, superposeAdded, theSeqs, ap);
29		}
30
31		/**
32		* Constructor given a session file to be loaded
33		*
34		* @param viewerData
35		* @param alignPanel
36		* @param sessionFile
37		* @param vid
38		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
39	0	public ChimeraXViewFrame(StructureViewerModel viewerData,...
40		AlignmentPanel alignPanel, String sessionFile, String vid)
41		{
42	0	super(viewerData, alignPanel, sessionFile, vid);
43		}
44
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
45	0	@Override...
46		public ViewerType getViewerType()
47		{
48	0	return ViewerType.CHIMERAX;
49		}
50
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
51	0	@Override...
52		protected String getViewerName()
53		{
54	0	return "ChimeraX";
55		}
56
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
57	0	@Override...
58		protected JalviewChimeraBindingModel newBindingModel(AlignmentPanel ap,
59		PDBEntry[] pdbentrys, SequenceI[][] seqs)
60		{
61	0	return new JalviewChimeraXBindingModel(this,
62		ap.getStructureSelectionManager(), pdbentrys, seqs, null);
63		}
64		}