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Coverage Report

  1. Project Clover database Thu Aug 13 2020 12:04:21 BST
  2. Package jalview.ext.varna

File RnaModel.java

 

Coverage histogram

../../../img/srcFileCovDistChart0.png
56% of files have more coverage

Code metrics

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5
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52
21
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Classes

Class Line # Actions
RnaModel 31 5 1
0.00%
 

Contributing tests

No tests hitting this source file were found.

Source view

1    /*
2    * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3    * Copyright (C) $$Year-Rel$$ The Jalview Authors
4    *
5    * This file is part of Jalview.
6    *
7    * Jalview is free software: you can redistribute it and/or
8    * modify it under the terms of the GNU General Public License
9    * as published by the Free Software Foundation, either version 3
10    * of the License, or (at your option) any later version.
11    *
12    * Jalview is distributed in the hope that it will be useful, but
13    * WITHOUT ANY WARRANTY; without even the implied warranty
14    * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15    * PURPOSE. See the GNU General Public License for more details.
16    *
17    * You should have received a copy of the GNU General Public License
18    * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19    * The Jalview Authors are detailed in the 'AUTHORS' file.
20    */
21    package jalview.ext.varna;
22   
23    import jalview.datamodel.AlignmentAnnotation;
24    import jalview.datamodel.SequenceI;
25   
26    import fr.orsay.lri.varna.models.rna.RNA;
27   
28    /**
29    * Data bean wrapping the data items that define one RNA view
30    */
 
31    public class RnaModel
32    {
33    public final String title;
34   
35    public final AlignmentAnnotation ann;
36   
37    public final SequenceI seq;
38   
39    public final boolean gapped;
40   
41    public final RNA rna;
42   
 
43  0 toggle public RnaModel(String t, AlignmentAnnotation aa, SequenceI s, RNA r,
44    boolean g)
45    {
46  0 title = t;
47  0 ann = aa;
48  0 seq = s;
49  0 rna = r;
50  0 gapped = g;
51    }
52    }