Build: #3 failed
Job: Clover and Tests failed
Build log
The build generated 303 lines of output. Download or view full build log
| 19-Jun-2026 11:35:12 | Build Jalview Builds - Gradle Develop Build - patch-JAL-4410_multimers_from_3dbeacons - Clover and Tests #3 (JB-GDB749-JOB1-3) started building on agent Default Agent |
| 19-Jun-2026 11:35:12 | |
| 19-Jun-2026 11:35:12 | Build working directory is /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB749-JOB1 |
| 19-Jun-2026 11:35:12 | Executing build Jalview Builds - Gradle Develop Build - patch-JAL-4410_multimers_from_3dbeacons - Clover and Tests #3 (JB-GDB749-JOB1-3) |
| 19-Jun-2026 11:35:12 | Starting task 'Checkout Default Repository' of type 'com.atlassian.bamboo.plugins.vcs:task.vcs.checkout' |
| 19-Jun-2026 11:35:12 | Checking out into /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB749-JOB1 |
| 19-Jun-2026 11:35:12 | Updating source code to revision: d9d218fe9b518987c14acfe100646789b1dbc30f |
| 19-Jun-2026 11:35:12 | Fetching 'refs/heads/patch/JAL-4410_multimers_from_3dbeacons' from 'https://gitlab.jalview.org/jalview/jalview.git'. |
| 19-Jun-2026 11:35:12 | Checking out revision d9d218fe9b518987c14acfe100646789b1dbc30f. |
| 19-Jun-2026 11:35:12 | From file:///srv/bamboo/bamboo-home/xml-data/build-dir/_git-repositories-cache/62ce6c67e11163a982952b2962d6d7b0872110f0 |
| 19-Jun-2026 11:35:12 | 6488926..d9d218f patch/JAL-4410_multimers_from_3dbeacons -> origin/patch/JAL-4410_multimers_from_3dbeacons |
| 19-Jun-2026 11:35:12 | Already on 'patch/JAL-4410_multimers_from_3dbeacons' |
| 19-Jun-2026 11:35:12 | Your branch is behind 'origin/patch/JAL-4410_multimers_from_3dbeacons' by 2 commits, and can be fast-forwarded. |
| 19-Jun-2026 11:35:12 | (use "git pull" to update your local branch) |
| 19-Jun-2026 11:35:12 | HEAD is now at d9d218f JAL-4410 some tests to verify PAE is added to all sequences in a modeled structure |
| 19-Jun-2026 11:35:12 | Updated source code to revision: d9d218fe9b518987c14acfe100646789b1dbc30f |
| 19-Jun-2026 11:35:12 | Finished task 'Checkout Default Repository' with result: Success |
| 19-Jun-2026 11:35:12 | Running pre-build action: VCS Version Collector |
| 19-Jun-2026 11:35:12 | Running pre-build action: Artifactory Release Staging |
| 19-Jun-2026 11:35:12 | Starting task 'Run tests with openclover under gradle' of type 'org.jfrog.bamboo.bamboo-artifactory-plugin:artifactoryGradleTask' |
| 19-Jun-2026 11:35:12 | Bamboo Artifactory Plugin version: 2.6.2 |
| 19-Jun-2026 11:35:12 | Beginning to execute external process for build 'Jalview Builds - Gradle Develop Build - patch-JAL-4410_multimers_from_3dbeacons - Clover and Tests #3 (JB-GDB749-JOB1-3)' ... running command line: /home/bamboo/buildtools/x11-gradle/bin/gradle -Pclover=true -PJAVA_VERSION=11 -Ptestng_excluded_groups=Not-bamboo clean cleanTest test ... in: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB749-JOB1 ... using extra environment variables: bamboo_planRepository_1_branch=patch/JAL-4410_multimers_from_3dbeacons bamboo_capability_system_builder_maven_Artifactory_Maven_3=/usr bamboo_repository_48169043_branch_name=patch/JAL-4410_multimers_from_3dbeacons CATALINA_PID=/home/bamboo/latest/work/bamboo.pid bamboo_planRepository_1_branchDisplayName=patch/JAL-4410_multimers_from_3dbeacons bamboo_repository_revision_number=d9d218fe9b518987c14acfe100646789b1dbc30f bamboo_repository_48169043_previous_revision_number=648892615bcaf223b2b6986392066ddbfcfb6745 bamboo_resultsUrl=https://builds.jalview.org/browse/JB-GDB749-JOB1-3 JAVA_OPTS=-Xms512m -Xmx1024m -Dbamboo.home=/srv/bamboo/bamboo-home -Djdk.tls.ephemeralDHKeySize=2048 bamboo_build_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB749-JOB1 bamboo_planRepository_1_name=Jalview Gitlab bamboo_buildKey=JB-GDB749-JOB1 bamboo_shortPlanName=patch-JAL-4410_multimers_from_3dbeacons bamboo_planRepository_name=Jalview Gitlab LOGNAME=bamboo bamboo_buildNumber=3 PWD=/ bamboo_capability_system_builder_command_Eclipse_2019_09=/home/bamboo/buildtools/eclipse/jee-2019-09/eclipse/eclipse bamboo_repository_48169043_git_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git bamboo_shortJobName=Clover and Tests bamboo_buildResultsUrl=https://builds.jalview.org/browse/JB-GDB749-JOB1-3 bamboo_planRepository_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git SHELL=/bin/bash bamboo_agentId=196609 bamboo_planName=Jalview Builds - Gradle Develop Build - patch-JAL-4410_multimers_from_3dbeacons bamboo_shortPlanKey=GDB749 bamboo_shortJobKey=JOB1 bamboo_capability_system_jdk_OpenJDK_11=/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk bamboo_planRepository_revision=d9d218fe9b518987c14acfe100646789b1dbc30f bamboo_buildTimeStamp=2026-06-19T11:35:12.343+01:00 bamboo_repository_previous_revision_number=648892615bcaf223b2b6986392066ddbfcfb6745 bamboo_repository_48169043_name=Jalview Gitlab bamboo_planRepository_previousRevision=648892615bcaf223b2b6986392066ddbfcfb6745 bamboo_repository_git_branch=patch/JAL-4410_multimers_from_3dbeacons bamboo_buildResultKey=JB-GDB749-JOB1-3 bamboo_repository_branch_name=patch/JAL-4410_multimers_from_3dbeacons bamboo_buildPlanName=Jalview Builds - Gradle Develop Build - patch-JAL-4410_multimers_from_3dbeacons - Clover and Tests bamboo_capability_system_builder_ant_j11_Ant=/home/bamboo/buildtools/j11/ant-j11 bamboo_planRepository_1_revision=d9d218fe9b518987c14acfe100646789b1dbc30f SHLVL=1 bamboo_capability_system_builder_ant_x11_Ant=/home/bamboo/buildtools/x11-ant bamboo_repository_name=Jalview Gitlab JAVA_HOME=/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/ LANG=en_GB.UTF-8 bamboo_buildFailed=false bamboo_capability_system_jdk_OpenJDK_8=/home/bamboo/buildtools/jdk/jdk-8-linux-x64/jdk bamboo_planRepository_branch=patch/JAL-4410_multimers_from_3dbeacons bamboo_agentWorkingDirectory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609 bamboo_capability_system_git_executable=/bin/git bamboo_repository_48169043_git_branch=patch/JAL-4410_multimers_from_3dbeacons bamboo_repository_git_username= bamboo_planRepository_1_previousRevision=648892615bcaf223b2b6986392066ddbfcfb6745 bamboo_planRepository_branchDisplayName=patch/JAL-4410_multimers_from_3dbeacons bamboo_planRepository_1_type=gitv2 bamboo_planRepository_branchName=patch/JAL-4410_multimers_from_3dbeacons _=/usr/bin/java bamboo_capability_system_builder_ant_j11_x11_Ant=/home/bamboo/buildtools/j11/x11-ant-j11 bamboo_repository_48169043_revision_number=d9d218fe9b518987c14acfe100646789b1dbc30f bamboo_capability_system_builderivy_Ivy=/usr bamboo_repository_48169043_git_username= bamboo_plan_storageTag=plan-47972517 bamboo_capability_system_builder_gradle_Gradle=/home/bamboo/buildtools/gradle bamboo_hg_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_hg-repositories-cache bamboo_planRepository_1_username= bamboo_planRepository_type=gitv2 USER=bamboo bamboo_git_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_git-repositories-cache bamboo_repository_git_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git bamboo_capability_system_builder_ant_Ant=/usr/share/ant bamboo_capability_system_builder_mvn3_Maven_3=/usr/share/maven bamboo_tmp_directory=/srv/bamboo/bamboo-home/temp bamboo_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB749-JOB1 bamboo_planKey=JB-GDB749 bamboo_planRepository_1_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git bamboo_planRepository_username= HOME=/home/bamboo bamboo_planRepository_1_branchName=patch/JAL-4410_multimers_from_3dbeacons PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin |
| 19-Jun-2026 11:35:12 | 2414 |
| 19-Jun-2026 11:35:13 | Starting a Gradle Daemon (subsequent builds will be faster) |
| 19-Jun-2026 11:35:19 | |
| 19-Jun-2026 11:35:19 | > Configure project : |
| 19-Jun-2026 11:35:19 | Using properties from file './utils/channels/default/channel_gradle.properties' |
| 19-Jun-2026 11:35:19 | JALVIEW_VERSION is set to '2.11.5.1' |
| 19-Jun-2026 11:35:19 | HEADLESS BUILD |
| 19-Jun-2026 11:35:19 | J2S ENABLED |
| 19-Jun-2026 11:35:19 | Using a LOCAL profile. |
| 19-Jun-2026 11:35:20 | eclipseDir exists |
| 19-Jun-2026 11:35:21 | |
| 19-Jun-2026 11:35:21 | > Task :clean |
| 19-Jun-2026 11:35:21 | > Task :cleanClover |
| 19-Jun-2026 11:35:21 | > Task :cleanTest UP-TO-DATE |
| 19-Jun-2026 11:35:23 | |
| 19-Jun-2026 11:35:23 | > Task :cloverInstrJava |
| 19-Jun-2026 11:35:23 | Clover: About to instrument 1110 files |
| 19-Jun-2026 11:35:23 | OpenClover Version 4.4.1, built on October 11 2019 (build-1020) |
| 19-Jun-2026 11:35:23 | Creating new database at '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB749-JOB1/build/clover/clover.db'. |
| 19-Jun-2026 11:35:23 | Processing files at 1.9 source level. |
| 19-Jun-2026 11:35:25 | WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body? |
| 19-Jun-2026 11:35:25 | WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body? |
| 19-Jun-2026 11:35:25 | WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body? |
| 19-Jun-2026 11:35:25 | WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body? |
| 19-Jun-2026 11:35:25 | WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body? |
| 19-Jun-2026 11:35:25 | WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body? |
| 19-Jun-2026 11:35:25 | WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body? |
| 19-Jun-2026 11:35:31 | Clover all over. Instrumented 1110 files (113 packages). |
| 19-Jun-2026 11:35:33 | |
| 19-Jun-2026 11:35:33 | > Task :cloverInstrTests |
| 19-Jun-2026 11:35:33 | Clover: About to instrument test files |
| 19-Jun-2026 11:35:33 | OpenClover Version 4.4.1, built on October 11 2019 (build-1020) |
| 19-Jun-2026 11:35:33 | Updating existing database at '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB749-JOB1/build/clover/clover.db'. |
| 19-Jun-2026 11:35:33 | Processing files at 1.9 source level. |
| 19-Jun-2026 11:35:36 | Clover all over. Instrumented 293 files (52 packages). |
| 19-Jun-2026 11:35:36 | 1628 test methods detected. |
| 19-Jun-2026 11:35:36 | |
| 19-Jun-2026 11:35:36 | > Task :cloverInstr |
| 19-Jun-2026 11:35:38 | |
| 19-Jun-2026 11:35:38 | > Task :compileCloverJava |
| 19-Jun-2026 11:35:38 | Execution optimizations have been disabled for task ':compileCloverJava' to ensure correctness due to the following reasons: |
| 19-Jun-2026 11:35:38 | - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB749-JOB1/build/clover/clover-classes'. Reason: Task ':cloverInstrJava' uses this output of task ':compileCloverJava' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem. |
| 19-Jun-2026 11:35:38 | - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB749-JOB1/build/clover/clover-classes'. Reason: Task ':cloverInstrTests' uses this output of task ':compileCloverJava' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem. |
| 19-Jun-2026 11:35:38 | - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB749-JOB1/build/clover/clover-instr'. Reason: Task ':compileCloverJava' uses this output of task ':cloverInstrJava' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem. |
| 19-Jun-2026 11:35:38 | Setting target compatibility to 11 |
| 19-Jun-2026 11:35:58 | Note: Some input files use or override a deprecated API. |
| 19-Jun-2026 11:35:58 | Note: Recompile with -Xlint:deprecation for details. |
| 19-Jun-2026 11:35:58 | Note: Some input files use unchecked or unsafe operations. |
| 19-Jun-2026 11:35:58 | Note: Recompile with -Xlint:unchecked for details. |
| 19-Jun-2026 11:36:04 | |
| 19-Jun-2026 11:36:04 | > Task :processCloverResources NO-SOURCE |
| 19-Jun-2026 11:36:04 | > Task :cloverClasses |
| 19-Jun-2026 11:36:05 | > Task :copyHelp |
| 19-Jun-2026 11:36:06 | > Task :buildIndices |
| 19-Jun-2026 11:36:06 | > Task :copyResources |
| 19-Jun-2026 11:36:06 | > Task :copyChannelResources |
| 19-Jun-2026 11:36:06 | |
| 19-Jun-2026 11:36:06 | > Task :createBuildProperties |
| 19-Jun-2026 11:36:06 | Execution optimizations have been disabled for task ':createBuildProperties' to ensure correctness due to the following reasons: |
| 19-Jun-2026 11:36:06 | - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB749-JOB1/build/resources/resources_build'. Reason: Task ':createBuildProperties' uses this output of task ':copyChannelResources' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem. |
| 19-Jun-2026 11:36:06 | |
| 19-Jun-2026 11:36:06 | > Task :buildResources |
| 19-Jun-2026 11:36:06 | > Task :copyDocs |
| 19-Jun-2026 11:36:06 | |
| 19-Jun-2026 11:36:06 | > Task :convertMdFiles |
| 19-Jun-2026 11:36:06 | Creating /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB749-JOB1/build/resources/doc_build/doc/README-DMG_creation.html |
| 19-Jun-2026 11:36:06 | Creating /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB749-JOB1/build/resources/doc_build/doc/releaseprocess.html |
| 19-Jun-2026 11:36:06 | Creating /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB749-JOB1/build/resources/doc_build/doc/README-DMG_background_image_creation.html |
| 19-Jun-2026 11:36:06 | Creating /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB749-JOB1/build/resources/doc_build/doc/building.html |
| 19-Jun-2026 11:36:06 | Creating /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB749-JOB1/build/resources/doc_build/doc/jalview-projects.html |
| 19-Jun-2026 11:36:07 | |
| 19-Jun-2026 11:36:07 | > Task :releasesTemplates |
| 19-Jun-2026 11:36:07 | Execution optimizations have been disabled for task ':releasesTemplates' to ensure correctness due to the following reasons: |
| 19-Jun-2026 11:36:07 | - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB749-JOB1/build/resources/help_build/help/html/releases.html'. Reason: Task ':buildIndices' uses this output of task ':releasesTemplates' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem. |
| 19-Jun-2026 11:36:07 | - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB749-JOB1/build/resources/help_build/help/html/whatsNew.html'. Reason: Task ':buildIndices' uses this output of task ':releasesTemplates' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem. |
| 19-Jun-2026 11:36:07 | Stripping rc/test/etc for TEST |
| 19-Jun-2026 11:36:07 | Looking in /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB749-JOB1/help/markdown/whatsnew/whatsnew-TEST.md |
| 19-Jun-2026 11:36:07 | |
| 19-Jun-2026 11:36:07 | > Task :prepare |
| 19-Jun-2026 11:36:09 | |
| 19-Jun-2026 11:36:09 | > Task :compileJava |
| 19-Jun-2026 11:36:09 | Setting target compatibility to 11 |
| 19-Jun-2026 11:36:13 | Note: Some input files use or override a deprecated API. |
| 19-Jun-2026 11:36:13 | Note: Recompile with -Xlint:deprecation for details. |
| 19-Jun-2026 11:36:13 | Note: Some input files use unchecked or unsafe operations. |
| 19-Jun-2026 11:36:13 | Note: Recompile with -Xlint:unchecked for details. |
| 19-Jun-2026 11:36:18 | |
| 19-Jun-2026 11:36:18 | > Task :compileTestJava |
| 19-Jun-2026 11:36:18 | Execution optimizations have been disabled for task ':compileTestJava' to ensure correctness due to the following reasons: |
| 19-Jun-2026 11:36:18 | - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB749-JOB1/build/clover/clover-classes'. Reason: Task ':compileTestJava' uses this output of task ':compileCloverJava' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem. |
| 19-Jun-2026 11:36:18 | - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB749-JOB1/build/clover/clover-test-instr'. Reason: Task ':compileTestJava' uses this output of task ':cloverInstrTests' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem. |
| 19-Jun-2026 11:36:18 | Setting target compatibility to 11 |
| 19-Jun-2026 11:36:22 | Note: Some input files use or override a deprecated API. |
| 19-Jun-2026 11:36:22 | Note: Recompile with -Xlint:deprecation for details. |
| 19-Jun-2026 11:36:22 | Note: Some input files use unchecked or unsafe operations. |
| 19-Jun-2026 11:36:22 | Note: Recompile with -Xlint:unchecked for details. |
| 19-Jun-2026 11:36:23 | |
| 19-Jun-2026 11:36:23 | > Task :processTestResources |
| 19-Jun-2026 11:36:23 | Execution optimizations have been disabled for task ':processTestResources' to ensure correctness due to the following reasons: |
| 19-Jun-2026 11:36:23 | - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB749-JOB1/build/resources/doc_build'. Reason: Task ':processTestResources' uses this output of task ':convertMdFiles' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem. |
| 19-Jun-2026 11:36:23 | - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB749-JOB1/build/resources/doc_build'. Reason: Task ':processTestResources' uses this output of task ':copyDocs' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem. |
| 19-Jun-2026 11:36:23 | - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB749-JOB1/build/resources/help_build'. Reason: Task ':processTestResources' uses this output of task ':buildIndices' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem. |
| 19-Jun-2026 11:36:23 | - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB749-JOB1/build/resources/help_build'. Reason: Task ':processTestResources' uses this output of task ':copyHelp' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem. |
| 19-Jun-2026 11:36:23 | - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB749-JOB1/build/resources/help_build'. Reason: Task ':processTestResources' uses this output of task ':releasesTemplates' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem. |
| 19-Jun-2026 11:36:23 | - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB749-JOB1/build/resources/resources_build'. Reason: Task ':processTestResources' uses this output of task ':copyChannelResources' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem. |
| 19-Jun-2026 11:36:23 | - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB749-JOB1/build/resources/resources_build'. Reason: Task ':processTestResources' uses this output of task ':copyResources' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem. |
| 19-Jun-2026 11:36:23 | - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB749-JOB1/build/resources/resources_build'. Reason: Task ':processTestResources' uses this output of task ':createBuildProperties' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem. |
| 19-Jun-2026 11:36:23 | |
| 19-Jun-2026 11:36:23 | > Task :testClasses |
| 19-Jun-2026 11:36:25 | |
| 19-Jun-2026 11:36:25 | > Task :testTask0 |
| 19-Jun-2026 11:36:25 | Running tests WITH clover |
| 19-Jun-2026 11:36:27 | WARNING: An illegal reflective access operation has occurred |
| 19-Jun-2026 11:36:27 | WARNING: Illegal reflective access by jalview.gui.Desktop (file:/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB749-JOB1/build/clover/clover-classes/) to field sun.awt.X11.XToolkit.awtAppClassName |
| 19-Jun-2026 11:36:27 | WARNING: Please consider reporting this to the maintainers of jalview.gui.Desktop |
| 19-Jun-2026 11:36:27 | WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations |
| 19-Jun-2026 11:36:27 | WARNING: All illegal access operations will be denied in a future release |
| 19-Jun-2026 11:36:46 | |
| 19-Jun-2026 11:36:46 | Gradle suite > Gradle test > jalview.ws.dbsources.EBIAlphaFoldTest.checkImportPAEForStructure[4](examples/AlphaFold/AF-0000000203848083-model_v1.cif, examples/AlphaFold/AF-0000000203848083-predicted_aligned_error_v1.json) FAILED |
| 19-Jun-2026 11:36:46 | java.lang.AssertionError: no contact map found for AF-0000000203848083-model_v1|B expected [1] but found [0] |
| 19-Jun-2026 11:36:46 | at org.testng.Assert.fail(Assert.java:94) |
| 19-Jun-2026 11:36:46 | at org.testng.Assert.failNotEquals(Assert.java:496) |
| 19-Jun-2026 11:36:46 | at org.testng.Assert.assertEquals(Assert.java:125) |
| 19-Jun-2026 11:36:46 | at org.testng.Assert.assertEquals(Assert.java:372) |
| 19-Jun-2026 11:36:46 | at jalview.ws.dbsources.EBIAlphaFoldTest.__CLR4_4_173ljzu3rpu(EBIAlphaFoldTest.java:158) |
| 19-Jun-2026 11:36:46 | at jalview.ws.dbsources.EBIAlphaFoldTest.checkImportPAEForStructure(EBIAlphaFoldTest.java:127) |
| 19-Jun-2026 11:36:48 | |
| 19-Jun-2026 11:36:48 | Gradle suite > Gradle test > jalview.ws.dbsources.EBIAlphaFoldTest.checkImportPAEToStructure[3](examples/AlphaFold/AF-Q5VSL9-F1-model_v4.pdb, examples/AlphaFold/AF-Q5VSL9-F1-predicted_aligned_error_v4_cmp.json) FAILED |
| 19-Jun-2026 11:36:48 | java.lang.AssertionError: Exception importing paefile 'examples/AlphaFold/AF-Q5VSL9-F1-predicted_aligned_error_v4_cmp.json' |
| 19-Jun-2026 11:36:48 | at org.testng.Assert.fail(Assert.java:83) |
| 19-Jun-2026 11:36:48 | at jalview.ws.dbsources.EBIAlphaFoldTest.__CLR4_4_1rvd1wm3rpc(EBIAlphaFoldTest.java:95) |
| 19-Jun-2026 11:36:48 | at jalview.ws.dbsources.EBIAlphaFoldTest.checkImportPAEToStructure(EBIAlphaFoldTest.java:66) |
| 19-Jun-2026 11:36:48 | |
| 19-Jun-2026 11:36:48 | Caused by: |
| 19-Jun-2026 11:36:48 | java.io.IOException: Stream Closed |
| 19-Jun-2026 11:36:48 | at java.base/java.io.FileInputStream.readBytes(Native Method) |
| 19-Jun-2026 11:36:48 | at java.base/java.io.FileInputStream.read(FileInputStream.java:279) |
| 19-Jun-2026 11:36:48 | at java.base/java.io.BufferedInputStream.fill(BufferedInputStream.java:252) |
| 19-Jun-2026 11:36:48 | at java.base/java.io.BufferedInputStream.read1(BufferedInputStream.java:292) |
| 19-Jun-2026 11:36:48 | at java.base/java.io.BufferedInputStream.read(BufferedInputStream.java:351) |
| 19-Jun-2026 11:36:48 | at java.base/java.io.FilterInputStream.read(FilterInputStream.java:107) |
| 19-Jun-2026 11:36:48 | at jalview.util.Platform.isGzipStream(Platform.java:602) |
| 19-Jun-2026 11:36:48 | at jalview.util.Platform.checkForGzipStream(Platform.java:644) |
| 19-Jun-2026 11:36:48 | at jalview.util.Platform.parseJSON(Platform.java:534) |
| 19-Jun-2026 11:36:48 | at jalview.ws.dbsources.EBIAlfaFold.parseJSONtoPAEContactMatrix(EBIAlfaFold.java:570) |
| 19-Jun-2026 11:36:48 | at jalview.ws.dbsources.EBIAlfaFold.importPaeJSONAsContactMatrixToStructure(EBIAlfaFold.java:605) |
| 19-Jun-2026 11:36:48 | at jalview.ws.dbsources.EBIAlfaFold.importPaeJSONAsContactMatrixToStructure(EBIAlfaFold.java:594) |
| 19-Jun-2026 11:36:48 | at jalview.ws.dbsources.EBIAlphaFoldTest.__CLR4_4_1rvd1wm3rpc(EBIAlphaFoldTest.java:89) |
| 19-Jun-2026 11:36:48 | ... 1 more |
| 19-Jun-2026 11:40:38 | |
| 19-Jun-2026 11:40:38 | 1845 tests completed, 2 failed |
| 19-Jun-2026 11:40:38 | There were failing tests. See the report at: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB749-JOB1/build/reports/tests/testTask0/index.html |
| 19-Jun-2026 11:40:40 | |
| 19-Jun-2026 11:40:40 | > Task :testTask1 |
| 19-Jun-2026 11:40:40 | Running tests WITH clover |
| 19-Jun-2026 11:40:41 | WARNING: An illegal reflective access operation has occurred |
| 19-Jun-2026 11:40:41 | WARNING: Illegal reflective access by jalview.gui.Desktop (file:/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB749-JOB1/build/clover/clover-classes/) to field sun.awt.X11.XToolkit.awtAppClassName |
| 19-Jun-2026 11:40:41 | WARNING: Please consider reporting this to the maintainers of jalview.gui.Desktop |
| 19-Jun-2026 11:40:41 | WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations |
| 19-Jun-2026 11:40:41 | WARNING: All illegal access operations will be denied in a future release |
| 19-Jun-2026 11:42:49 | |
| 19-Jun-2026 11:42:49 | > Task :testTask2 |
| 19-Jun-2026 11:42:49 | Running tests WITH clover |
| 19-Jun-2026 11:42:52 | |
| 19-Jun-2026 11:42:52 | > Task :testTask3 |
| 19-Jun-2026 11:42:52 | Running tests WITH clover |
| 19-Jun-2026 11:42:54 | WARNING: An illegal reflective access operation has occurred |
| 19-Jun-2026 11:42:54 | WARNING: Illegal reflective access by jalview.gui.Desktop (file:/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB749-JOB1/build/clover/clover-classes/) to field sun.awt.X11.XToolkit.awtAppClassName |
| 19-Jun-2026 11:42:54 | WARNING: Please consider reporting this to the maintainers of jalview.gui.Desktop |
| 19-Jun-2026 11:42:54 | WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations |
| 19-Jun-2026 11:42:54 | WARNING: All illegal access operations will be denied in a future release |
| 19-Jun-2026 11:43:40 | |
| 19-Jun-2026 11:43:40 | > Task :test NO-SOURCE |
| 19-Jun-2026 11:43:40 | ┌──────────────────────────────────────────────────────────────────────────────────────────────────────────────────────┐ |
| 19-Jun-2026 11:43:40 | │jalview:testTask0 results: FAILURE (1845 tests, 1843 successes, 2 failures, 0 skipped) in 4 minutes, 14.328 seconds │ |
| 19-Jun-2026 11:43:40 | │Report file: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB749-JOB1/build/reports/tests/testTask0/index.html│ |
| 19-Jun-2026 11:43:40 | ├──────────────────────────────────────────────────────────────────────────────────────────────────────────────────────┤ |
| 19-Jun-2026 11:43:40 | │jalview:testTask1 results: SUCCESS (62 tests, 62 successes, 0 failures, 0 skipped) in 2 minutes, 8.871 seconds │ |
| 19-Jun-2026 11:43:40 | │Report file: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB749-JOB1/build/reports/tests/testTask1/index.html│ |
| 19-Jun-2026 11:43:40 | ├──────────────────────────────────────────────────────────────────────────────────────────────────────────────────────┤ |
| 19-Jun-2026 11:43:40 | │jalview:testTask2 results: SUCCESS (1 tests, 1 successes, 0 failures, 0 skipped) in 3.176 seconds │ |
| 19-Jun-2026 11:43:40 | │Report file: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB749-JOB1/build/reports/tests/testTask2/index.html│ |
| 19-Jun-2026 11:43:40 | ├──────────────────────────────────────────────────────────────────────────────────────────────────────────────────────┤ |
| 19-Jun-2026 11:43:40 | │jalview:testTask3 results: SUCCESS (25 tests, 25 successes, 0 failures, 0 skipped) in 49.736 seconds │ |
| 19-Jun-2026 11:43:40 | │Report file: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB749-JOB1/build/reports/tests/testTask3/index.html│ |
| 19-Jun-2026 11:43:40 | ├──────────────────────────────────────────────────────────────────────────────────────────────────────────────────────┤ |
| 19-Jun-2026 11:43:40 | │OVERALL: results: FAILURE (1933 tests, 1931 successes, 2 failures, 0 skipped) in 6 minutes, 76.111 seconds │ |
| 19-Jun-2026 11:43:40 | └──────────────────────────────────────────────────────────────────────────────────────────────────────────────────────┘ |
| 19-Jun-2026 11:43:40 | |
| 19-Jun-2026 11:43:40 | FAILURE: Build failed with an exception. |
| 19-Jun-2026 11:43:40 | |
| 19-Jun-2026 11:43:40 | * Where: |
| 19-Jun-2026 11:43:40 | Build file '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB749-JOB1/build.gradle' line: 1967 |
| 19-Jun-2026 11:43:40 | |
| 19-Jun-2026 11:43:40 | * What went wrong: |
| 19-Jun-2026 11:43:40 | Failed tests! |
| 19-Jun-2026 11:43:40 | |
| 19-Jun-2026 11:43:40 | * Try: |
| 19-Jun-2026 11:43:40 | > Run with --stacktrace option to get the stack trace. |
| 19-Jun-2026 11:43:40 | > Run with --info or --debug option to get more log output. |
| 19-Jun-2026 11:43:40 | > Run with --scan to get full insights. |
| 19-Jun-2026 11:43:40 | |
| 19-Jun-2026 11:43:40 | * Get more help at https://help.gradle.org |
| 19-Jun-2026 11:43:40 | |
| 19-Jun-2026 11:43:40 | Deprecated Gradle features were used in this build, making it incompatible with Gradle 8.0. |
| 19-Jun-2026 11:43:40 | |
| 19-Jun-2026 11:43:40 | You can use '--warning-mode all' to show the individual deprecation warnings and determine if they come from your own scripts or plugins. |
| 19-Jun-2026 11:43:40 | |
| 19-Jun-2026 11:43:40 | See https://docs.gradle.org/7.4.2/userguide/command_line_interface.html#sec:command_line_warnings |
| 19-Jun-2026 11:43:40 | |
| 19-Jun-2026 11:43:40 | Execution optimizations have been disabled for 5 invalid unit(s) of work during this build to ensure correctness. |
| 19-Jun-2026 11:43:40 | Please consult deprecation warnings for more details. |
| 19-Jun-2026 11:43:40 | |
| 19-Jun-2026 11:43:40 | BUILD FAILED in 8m 27s |
| 19-Jun-2026 11:43:40 | 21 actionable tasks: 20 executed, 1 up-to-date |
| 19-Jun-2026 11:43:41 | |
| 19-Jun-2026 11:43:41 | Failing task since return code of [/home/bamboo/buildtools/x11-gradle/bin/gradle -Pclover=true -PJAVA_VERSION=11 -Ptestng_excluded_groups=Not-bamboo clean cleanTest test] was 1 while expected 0 |
| 19-Jun-2026 11:43:41 | Finished task 'Run tests with openclover under gradle' with result: Failed |
| 19-Jun-2026 11:43:41 | Starting task 'Clover Report' of type 'org.jfrog.bamboo.bamboo-artifactory-plugin:artifactoryGradleTask' |
| 19-Jun-2026 11:43:41 | Bamboo Artifactory Plugin version: 2.6.2 |
| 19-Jun-2026 11:43:41 | Beginning to execute external process for build 'Jalview Builds - Gradle Develop Build - patch-JAL-4410_multimers_from_3dbeacons - Clover and Tests #3 (JB-GDB749-JOB1-3)' ... running command line: /home/bamboo/buildtools/x11-gradle/bin/gradle --no-daemon -Pclover=true -PJAVA_VERSION=11 cloverReport ... in: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB749-JOB1 ... using extra environment variables: bamboo_planRepository_1_branch=patch/JAL-4410_multimers_from_3dbeacons bamboo_capability_system_builder_maven_Artifactory_Maven_3=/usr bamboo_repository_48169043_branch_name=patch/JAL-4410_multimers_from_3dbeacons CATALINA_PID=/home/bamboo/latest/work/bamboo.pid bamboo_planRepository_1_branchDisplayName=patch/JAL-4410_multimers_from_3dbeacons bamboo_repository_revision_number=d9d218fe9b518987c14acfe100646789b1dbc30f bamboo_repository_48169043_previous_revision_number=648892615bcaf223b2b6986392066ddbfcfb6745 bamboo_resultsUrl=https://builds.jalview.org/browse/JB-GDB749-JOB1-3 JAVA_OPTS=-Xms512m -Xmx1024m -Dbamboo.home=/srv/bamboo/bamboo-home -Djdk.tls.ephemeralDHKeySize=2048 bamboo_build_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB749-JOB1 bamboo_planRepository_1_name=Jalview Gitlab bamboo_buildKey=JB-GDB749-JOB1 bamboo_shortPlanName=patch-JAL-4410_multimers_from_3dbeacons bamboo_planRepository_name=Jalview Gitlab LOGNAME=bamboo bamboo_buildNumber=3 PWD=/ bamboo_capability_system_builder_command_Eclipse_2019_09=/home/bamboo/buildtools/eclipse/jee-2019-09/eclipse/eclipse bamboo_repository_48169043_git_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git bamboo_shortJobName=Clover and Tests bamboo_buildResultsUrl=https://builds.jalview.org/browse/JB-GDB749-JOB1-3 bamboo_planRepository_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git SHELL=/bin/bash bamboo_agentId=196609 bamboo_planName=Jalview Builds - Gradle Develop Build - patch-JAL-4410_multimers_from_3dbeacons bamboo_shortPlanKey=GDB749 bamboo_shortJobKey=JOB1 bamboo_capability_system_jdk_OpenJDK_11=/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk bamboo_planRepository_revision=d9d218fe9b518987c14acfe100646789b1dbc30f bamboo_buildTimeStamp=2026-06-19T11:35:12.343+01:00 bamboo_repository_previous_revision_number=648892615bcaf223b2b6986392066ddbfcfb6745 bamboo_repository_48169043_name=Jalview Gitlab bamboo_planRepository_previousRevision=648892615bcaf223b2b6986392066ddbfcfb6745 bamboo_repository_git_branch=patch/JAL-4410_multimers_from_3dbeacons bamboo_buildResultKey=JB-GDB749-JOB1-3 bamboo_repository_branch_name=patch/JAL-4410_multimers_from_3dbeacons bamboo_buildPlanName=Jalview Builds - Gradle Develop Build - patch-JAL-4410_multimers_from_3dbeacons - Clover and Tests bamboo_capability_system_builder_ant_j11_Ant=/home/bamboo/buildtools/j11/ant-j11 bamboo_planRepository_1_revision=d9d218fe9b518987c14acfe100646789b1dbc30f SHLVL=1 bamboo_capability_system_builder_ant_x11_Ant=/home/bamboo/buildtools/x11-ant bamboo_repository_name=Jalview Gitlab bamboo_build_commandline_org_jfrog_bamboo_bamboo_artifactory_plugin_artifactoryGradleTask_2=/home/bamboo/buildtools/x11-gradle/bin/gradle -Pclover=true -PJAVA_VERSION=11 -Ptestng_excluded_groups=Not-bamboo clean cleanTest test JAVA_HOME=/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/ LANG=en_GB.UTF-8 bamboo_buildFailed=true bamboo_capability_system_jdk_OpenJDK_8=/home/bamboo/buildtools/jdk/jdk-8-linux-x64/jdk bamboo_planRepository_branch=patch/JAL-4410_multimers_from_3dbeacons bamboo_agentWorkingDirectory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609 bamboo_jobFailed=true bamboo_capability_system_git_executable=/bin/git bamboo_repository_48169043_git_branch=patch/JAL-4410_multimers_from_3dbeacons bamboo_repository_git_username= bamboo_planRepository_1_previousRevision=648892615bcaf223b2b6986392066ddbfcfb6745 bamboo_planRepository_branchDisplayName=patch/JAL-4410_multimers_from_3dbeacons bamboo_planRepository_1_type=gitv2 bamboo_planRepository_branchName=patch/JAL-4410_multimers_from_3dbeacons _=/usr/bin/java bamboo_capability_system_builder_ant_j11_x11_Ant=/home/bamboo/buildtools/j11/x11-ant-j11 bamboo_repository_48169043_revision_number=d9d218fe9b518987c14acfe100646789b1dbc30f bamboo_capability_system_builderivy_Ivy=/usr bamboo_repository_48169043_git_username= bamboo_plan_storageTag=plan-47972517 bamboo_capability_system_builder_gradle_Gradle=/home/bamboo/buildtools/gradle bamboo_hg_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_hg-repositories-cache bamboo_planRepository_1_username= bamboo_planRepository_type=gitv2 USER=bamboo bamboo_git_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_git-repositories-cache bamboo_repository_git_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git bamboo_capability_system_builder_ant_Ant=/usr/share/ant bamboo_capability_system_builder_mvn3_Maven_3=/usr/share/maven bamboo_tmp_directory=/srv/bamboo/bamboo-home/temp bamboo_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB749-JOB1 bamboo_planKey=JB-GDB749 bamboo_planRepository_1_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git bamboo_planRepository_username= HOME=/home/bamboo bamboo_planRepository_1_branchName=patch/JAL-4410_multimers_from_3dbeacons PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin |
| 19-Jun-2026 11:43:41 | 2414 |
| 19-Jun-2026 11:43:46 | |
| 19-Jun-2026 11:43:46 | > Configure project : |
| 19-Jun-2026 11:43:46 | Using properties from file './utils/channels/default/channel_gradle.properties' |
| 19-Jun-2026 11:43:46 | JALVIEW_VERSION is set to '2.11.5.1' |
| 19-Jun-2026 11:43:46 | HEADLESS BUILD |
| 19-Jun-2026 11:43:46 | J2S ENABLED |
| 19-Jun-2026 11:43:46 | Using a LOCAL profile. |
| 19-Jun-2026 11:43:47 | eclipseDir exists |
| 19-Jun-2026 11:43:49 | |
| 19-Jun-2026 11:43:49 | > Task :cloverHtmlReport |
| 19-Jun-2026 11:43:49 | OpenClover Version 4.4.1, built on October 11 2019 (build-1020) |
| 19-Jun-2026 11:43:50 | Writing HTML report to '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB749-JOB1/build/reports/clover' |
| 19-Jun-2026 11:44:36 | Done. Processed 117 packages in 46039ms (393ms per package). |
| 19-Jun-2026 11:44:42 | |
| 19-Jun-2026 11:44:42 | > Task :cloverXmlReport |
| 19-Jun-2026 11:44:42 | OpenClover Version 4.4.1, built on October 11 2019 (build-1020) |
| 19-Jun-2026 11:44:44 | Writing report to '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB749-JOB1/build/reports/clover/clover.xml' |
| 19-Jun-2026 11:44:45 | |
| 19-Jun-2026 11:44:45 | > Task :cloverReport |
| 19-Jun-2026 11:44:45 | |
| 19-Jun-2026 11:44:45 | Deprecated Gradle features were used in this build, making it incompatible with Gradle 8.0. |
| 19-Jun-2026 11:44:45 | |
| 19-Jun-2026 11:44:45 | You can use '--warning-mode all' to show the individual deprecation warnings and determine if they come from your own scripts or plugins. |
| 19-Jun-2026 11:44:45 | |
| 19-Jun-2026 11:44:45 | See https://docs.gradle.org/7.4.2/userguide/command_line_interface.html#sec:command_line_warnings |
| 19-Jun-2026 11:44:45 | |
| 19-Jun-2026 11:44:45 | BUILD SUCCESSFUL in 1m 3s |
| 19-Jun-2026 11:44:45 | 2 actionable tasks: 2 executed |
| 19-Jun-2026 11:44:45 | Finished task 'Clover Report' with result: Success |
| 19-Jun-2026 11:44:45 | Starting task 'TestNG Parser' of type 'com.atlassian.bamboo.plugins.testresultparser:task.testresultparser.testng' |
| 19-Jun-2026 11:44:45 | Parsing test results under /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB749-JOB1... |
| 19-Jun-2026 11:44:45 | Failing task since 2 failing test cases were found. |
| 19-Jun-2026 11:44:45 | Finished task 'TestNG Parser' with result: Failed |
| 19-Jun-2026 11:44:45 | Running post build plugin 'NCover Results Collector' |
| 19-Jun-2026 11:44:45 | Running post build plugin 'Artifact Copier' |
| 19-Jun-2026 11:44:45 | Publishing an artifact: Clover Report (System) |
| 19-Jun-2026 11:44:47 | Finished publishing of artifact Job artifact: [Clover Report (System)], pattern: [**/*.*] anchored at: [build/reports/clover] in 1.809 s |
| 19-Jun-2026 11:44:47 | Publishing an artifact: TestNG report |
| 19-Jun-2026 11:44:47 | Unable to publish artifact [TestNG report]: the source directory /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB749-JOB1/build/reports/tests/test does not exist. |
| 19-Jun-2026 11:44:47 | The artifact hasn't been successfully published after 3.277 ms |
| 19-Jun-2026 11:44:47 | Running post build plugin 'Artifactory Release Management Staging' |
| 19-Jun-2026 11:44:47 | Running post build plugin 'Artifactory Build Info Copier' |
| 19-Jun-2026 11:44:47 | Running post build plugin 'Artifactory Gradle Properties Info Copier' |
| 19-Jun-2026 11:44:47 | Running post build plugin 'npm Cache Cleanup' |
| 19-Jun-2026 11:44:47 | Running post build plugin 'Clover Results Collector' |
| 19-Jun-2026 11:44:47 | Running post build plugin 'Docker Container Cleanup' |
| 19-Jun-2026 11:44:47 | Finalising the build... |
| 19-Jun-2026 11:44:47 | Stopping timer. |
| 19-Jun-2026 11:44:47 | Build JB-GDB749-JOB1-3 completed. |
| 19-Jun-2026 11:44:47 | Running on server: post build plugin 'NCover Results Collector' |
| 19-Jun-2026 11:44:47 | Running on server: post build plugin 'Build Hanging Detection Configuration' |
| 19-Jun-2026 11:44:47 | Running on server: post build plugin 'Clover Delta Calculator' |
| 19-Jun-2026 11:44:47 | Running on server: post build plugin 'Maven Dependencies Postprocessor' |
| 19-Jun-2026 11:44:47 | All post build plugins have finished |
| 19-Jun-2026 11:44:47 | Generating build results summary... |
| 19-Jun-2026 11:44:47 | Saving build results to disk... |
| 19-Jun-2026 11:44:47 | Logging substituted variables... |
| 19-Jun-2026 11:44:47 | Indexing build results... |
| 19-Jun-2026 11:44:47 | Finished building JB-GDB749-JOB1-3. |