simple	19-Jun-2026 11:35:12	Build Jalview Builds - Gradle Develop Build - patch-JAL-4410_multimers_from_3dbeacons - Clover and Tests #3 (JB-GDB749-JOB1-3) started building on agent Default Agent
simple	19-Jun-2026 11:35:12	
simple	19-Jun-2026 11:35:12	Build working directory is /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB749-JOB1
simple	19-Jun-2026 11:35:12	Executing build Jalview Builds - Gradle Develop Build - patch-JAL-4410_multimers_from_3dbeacons - Clover and Tests #3 (JB-GDB749-JOB1-3)
simple	19-Jun-2026 11:35:12	Starting task 'Checkout Default Repository' of type 'com.atlassian.bamboo.plugins.vcs:task.vcs.checkout'
simple	19-Jun-2026 11:35:12	Checking out into /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB749-JOB1
simple	19-Jun-2026 11:35:12	Updating source code to revision: d9d218fe9b518987c14acfe100646789b1dbc30f
simple	19-Jun-2026 11:35:12	Fetching 'refs/heads/patch/JAL-4410_multimers_from_3dbeacons' from 'https://gitlab.jalview.org/jalview/jalview.git'.
simple	19-Jun-2026 11:35:12	Checking out revision d9d218fe9b518987c14acfe100646789b1dbc30f.
simple	19-Jun-2026 11:35:12	From file:///srv/bamboo/bamboo-home/xml-data/build-dir/_git-repositories-cache/62ce6c67e11163a982952b2962d6d7b0872110f0
simple	19-Jun-2026 11:35:12	   6488926..d9d218f  patch/JAL-4410_multimers_from_3dbeacons -> origin/patch/JAL-4410_multimers_from_3dbeacons
simple	19-Jun-2026 11:35:12	Already on 'patch/JAL-4410_multimers_from_3dbeacons'
simple	19-Jun-2026 11:35:12	Your branch is behind 'origin/patch/JAL-4410_multimers_from_3dbeacons' by 2 commits, and can be fast-forwarded.
simple	19-Jun-2026 11:35:12	  (use "git pull" to update your local branch)
simple	19-Jun-2026 11:35:12	HEAD is now at d9d218f JAL-4410 some tests to verify PAE is added to all sequences in a modeled structure
simple	19-Jun-2026 11:35:12	Updated source code to revision: d9d218fe9b518987c14acfe100646789b1dbc30f
simple	19-Jun-2026 11:35:12	Finished task 'Checkout Default Repository' with result: Success
simple	19-Jun-2026 11:35:12	Running pre-build action: VCS Version Collector
simple	19-Jun-2026 11:35:12	Running pre-build action: Artifactory Release Staging
simple	19-Jun-2026 11:35:12	Starting task 'Run tests with openclover under gradle' of type 'org.jfrog.bamboo.bamboo-artifactory-plugin:artifactoryGradleTask'
simple	19-Jun-2026 11:35:12	Bamboo Artifactory Plugin version: 2.6.2
command	19-Jun-2026 11:35:12	Beginning to execute external process for build 'Jalview Builds - Gradle Develop Build - patch-JAL-4410_multimers_from_3dbeacons - Clover and Tests #3 (JB-GDB749-JOB1-3)'\n ... running command line: \n/home/bamboo/buildtools/x11-gradle/bin/gradle -Pclover=true -PJAVA_VERSION=11 -Ptestng_excluded_groups=Not-bamboo clean cleanTest test\n ... in: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB749-JOB1\n ... using extra environment variables: \nbamboo_planRepository_1_branch=patch/JAL-4410_multimers_from_3dbeacons\nbamboo_capability_system_builder_maven_Artifactory_Maven_3=/usr\nbamboo_repository_48169043_branch_name=patch/JAL-4410_multimers_from_3dbeacons\nCATALINA_PID=/home/bamboo/latest/work/bamboo.pid\nbamboo_planRepository_1_branchDisplayName=patch/JAL-4410_multimers_from_3dbeacons\nbamboo_repository_revision_number=d9d218fe9b518987c14acfe100646789b1dbc30f\nbamboo_repository_48169043_previous_revision_number=648892615bcaf223b2b6986392066ddbfcfb6745\nbamboo_resultsUrl=https://builds.jalview.org/browse/JB-GDB749-JOB1-3\nJAVA_OPTS=-Xms512m -Xmx1024m    -Dbamboo.home=/srv/bamboo/bamboo-home -Djdk.tls.ephemeralDHKeySize=2048\nbamboo_build_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB749-JOB1\nbamboo_planRepository_1_name=Jalview Gitlab\nbamboo_buildKey=JB-GDB749-JOB1\nbamboo_shortPlanName=patch-JAL-4410_multimers_from_3dbeacons\nbamboo_planRepository_name=Jalview Gitlab\nLOGNAME=bamboo\nbamboo_buildNumber=3\nPWD=/\nbamboo_capability_system_builder_command_Eclipse_2019_09=/home/bamboo/buildtools/eclipse/jee-2019-09/eclipse/eclipse\nbamboo_repository_48169043_git_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git\nbamboo_shortJobName=Clover and Tests\nbamboo_buildResultsUrl=https://builds.jalview.org/browse/JB-GDB749-JOB1-3\nbamboo_planRepository_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git\nSHELL=/bin/bash\nbamboo_agentId=196609\nbamboo_planName=Jalview Builds - Gradle Develop Build - patch-JAL-4410_multimers_from_3dbeacons\nbamboo_shortPlanKey=GDB749\nbamboo_shortJobKey=JOB1\nbamboo_capability_system_jdk_OpenJDK_11=/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk\nbamboo_planRepository_revision=d9d218fe9b518987c14acfe100646789b1dbc30f\nbamboo_buildTimeStamp=2026-06-19T11:35:12.343+01:00\nbamboo_repository_previous_revision_number=648892615bcaf223b2b6986392066ddbfcfb6745\nbamboo_repository_48169043_name=Jalview Gitlab\nbamboo_planRepository_previousRevision=648892615bcaf223b2b6986392066ddbfcfb6745\nbamboo_repository_git_branch=patch/JAL-4410_multimers_from_3dbeacons\nbamboo_buildResultKey=JB-GDB749-JOB1-3\nbamboo_repository_branch_name=patch/JAL-4410_multimers_from_3dbeacons\nbamboo_buildPlanName=Jalview Builds - Gradle Develop Build - patch-JAL-4410_multimers_from_3dbeacons - Clover and Tests\nbamboo_capability_system_builder_ant_j11_Ant=/home/bamboo/buildtools/j11/ant-j11\nbamboo_planRepository_1_revision=d9d218fe9b518987c14acfe100646789b1dbc30f\nSHLVL=1\nbamboo_capability_system_builder_ant_x11_Ant=/home/bamboo/buildtools/x11-ant\nbamboo_repository_name=Jalview Gitlab\nJAVA_HOME=/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/\nLANG=en_GB.UTF-8\nbamboo_buildFailed=false\nbamboo_capability_system_jdk_OpenJDK_8=/home/bamboo/buildtools/jdk/jdk-8-linux-x64/jdk\nbamboo_planRepository_branch=patch/JAL-4410_multimers_from_3dbeacons\nbamboo_agentWorkingDirectory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609\nbamboo_capability_system_git_executable=/bin/git\nbamboo_repository_48169043_git_branch=patch/JAL-4410_multimers_from_3dbeacons\nbamboo_repository_git_username=\nbamboo_planRepository_1_previousRevision=648892615bcaf223b2b6986392066ddbfcfb6745\nbamboo_planRepository_branchDisplayName=patch/JAL-4410_multimers_from_3dbeacons\nbamboo_planRepository_1_type=gitv2\nbamboo_planRepository_branchName=patch/JAL-4410_multimers_from_3dbeacons\n_=/usr/bin/java\nbamboo_capability_system_builder_ant_j11_x11_Ant=/home/bamboo/buildtools/j11/x11-ant-j11\nbamboo_repository_48169043_revision_number=d9d218fe9b518987c14acfe100646789b1dbc30f\nbamboo_capability_system_builderivy_Ivy=/usr\nbamboo_repository_48169043_git_username=\nbamboo_plan_storageTag=plan-47972517\nbamboo_capability_system_builder_gradle_Gradle=/home/bamboo/buildtools/gradle\nbamboo_hg_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_hg-repositories-cache\nbamboo_planRepository_1_username=\nbamboo_planRepository_type=gitv2\nUSER=bamboo\nbamboo_git_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_git-repositories-cache\nbamboo_repository_git_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git\nbamboo_capability_system_builder_ant_Ant=/usr/share/ant\nbamboo_capability_system_builder_mvn3_Maven_3=/usr/share/maven\nbamboo_tmp_directory=/srv/bamboo/bamboo-home/temp\nbamboo_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB749-JOB1\nbamboo_planKey=JB-GDB749\nbamboo_planRepository_1_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git\nbamboo_planRepository_username=\nHOME=/home/bamboo\nbamboo_planRepository_1_branchName=patch/JAL-4410_multimers_from_3dbeacons\nPATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin\n
build	19-Jun-2026 11:35:12	2414
build	19-Jun-2026 11:35:13	Starting a Gradle Daemon (subsequent builds will be faster)
build	19-Jun-2026 11:35:19	
build	19-Jun-2026 11:35:19	> Configure project :
build	19-Jun-2026 11:35:19	Using properties from file './utils/channels/default/channel_gradle.properties'
build	19-Jun-2026 11:35:19	JALVIEW_VERSION is set to '2.11.5.1'
build	19-Jun-2026 11:35:19	HEADLESS BUILD
build	19-Jun-2026 11:35:19	J2S ENABLED
build	19-Jun-2026 11:35:19	Using a LOCAL profile.
build	19-Jun-2026 11:35:20	eclipseDir exists
build	19-Jun-2026 11:35:21	
build	19-Jun-2026 11:35:21	> Task :clean
build	19-Jun-2026 11:35:21	> Task :cleanClover
build	19-Jun-2026 11:35:21	> Task :cleanTest UP-TO-DATE
build	19-Jun-2026 11:35:23	
build	19-Jun-2026 11:35:23	> Task :cloverInstrJava
build	19-Jun-2026 11:35:23	Clover: About to instrument 1110 files
build	19-Jun-2026 11:35:23	OpenClover Version 4.4.1, built on October 11 2019 (build-1020)
build	19-Jun-2026 11:35:23	Creating new database at '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB749-JOB1/build/clover/clover.db'.
build	19-Jun-2026 11:35:23	Processing files at 1.9 source level.
error	19-Jun-2026 11:35:25	WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body?
error	19-Jun-2026 11:35:25	WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body?
error	19-Jun-2026 11:35:25	WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body?
error	19-Jun-2026 11:35:25	WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body?
error	19-Jun-2026 11:35:25	WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body?
error	19-Jun-2026 11:35:25	WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body?
error	19-Jun-2026 11:35:25	WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body?
build	19-Jun-2026 11:35:31	Clover all over. Instrumented 1110 files (113 packages).
build	19-Jun-2026 11:35:33	
build	19-Jun-2026 11:35:33	> Task :cloverInstrTests
build	19-Jun-2026 11:35:33	Clover: About to instrument test files
build	19-Jun-2026 11:35:33	OpenClover Version 4.4.1, built on October 11 2019 (build-1020)
build	19-Jun-2026 11:35:33	Updating existing database at '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB749-JOB1/build/clover/clover.db'.
build	19-Jun-2026 11:35:33	Processing files at 1.9 source level.
build	19-Jun-2026 11:35:36	Clover all over. Instrumented 293 files (52 packages).
build	19-Jun-2026 11:35:36	1628 test methods detected.
build	19-Jun-2026 11:35:36	
build	19-Jun-2026 11:35:36	> Task :cloverInstr
build	19-Jun-2026 11:35:38	
build	19-Jun-2026 11:35:38	> Task :compileCloverJava
build	19-Jun-2026 11:35:38	Execution optimizations have been disabled for task ':compileCloverJava' to ensure correctness due to the following reasons:
build	19-Jun-2026 11:35:38	  - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB749-JOB1/build/clover/clover-classes'. Reason: Task ':cloverInstrJava' uses this output of task ':compileCloverJava' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
build	19-Jun-2026 11:35:38	  - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB749-JOB1/build/clover/clover-classes'. Reason: Task ':cloverInstrTests' uses this output of task ':compileCloverJava' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
build	19-Jun-2026 11:35:38	  - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB749-JOB1/build/clover/clover-instr'. Reason: Task ':compileCloverJava' uses this output of task ':cloverInstrJava' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
build	19-Jun-2026 11:35:38	Setting target compatibility to 11
error	19-Jun-2026 11:35:58	Note: Some input files use or override a deprecated API.
error	19-Jun-2026 11:35:58	Note: Recompile with -Xlint:deprecation for details.
error	19-Jun-2026 11:35:58	Note: Some input files use unchecked or unsafe operations.
error	19-Jun-2026 11:35:58	Note: Recompile with -Xlint:unchecked for details.
build	19-Jun-2026 11:36:04	
build	19-Jun-2026 11:36:04	> Task :processCloverResources NO-SOURCE
build	19-Jun-2026 11:36:04	> Task :cloverClasses
build	19-Jun-2026 11:36:05	> Task :copyHelp
build	19-Jun-2026 11:36:06	> Task :buildIndices
build	19-Jun-2026 11:36:06	> Task :copyResources
build	19-Jun-2026 11:36:06	> Task :copyChannelResources
build	19-Jun-2026 11:36:06	
build	19-Jun-2026 11:36:06	> Task :createBuildProperties
build	19-Jun-2026 11:36:06	Execution optimizations have been disabled for task ':createBuildProperties' to ensure correctness due to the following reasons:
build	19-Jun-2026 11:36:06	  - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB749-JOB1/build/resources/resources_build'. Reason: Task ':createBuildProperties' uses this output of task ':copyChannelResources' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
build	19-Jun-2026 11:36:06	
build	19-Jun-2026 11:36:06	> Task :buildResources
build	19-Jun-2026 11:36:06	> Task :copyDocs
build	19-Jun-2026 11:36:06	
build	19-Jun-2026 11:36:06	> Task :convertMdFiles
build	19-Jun-2026 11:36:06	Creating /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB749-JOB1/build/resources/doc_build/doc/README-DMG_creation.html
build	19-Jun-2026 11:36:06	Creating /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB749-JOB1/build/resources/doc_build/doc/releaseprocess.html
build	19-Jun-2026 11:36:06	Creating /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB749-JOB1/build/resources/doc_build/doc/README-DMG_background_image_creation.html
build	19-Jun-2026 11:36:06	Creating /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB749-JOB1/build/resources/doc_build/doc/building.html
build	19-Jun-2026 11:36:06	Creating /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB749-JOB1/build/resources/doc_build/doc/jalview-projects.html
build	19-Jun-2026 11:36:07	
build	19-Jun-2026 11:36:07	> Task :releasesTemplates
build	19-Jun-2026 11:36:07	Execution optimizations have been disabled for task ':releasesTemplates' to ensure correctness due to the following reasons:
build	19-Jun-2026 11:36:07	  - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB749-JOB1/build/resources/help_build/help/html/releases.html'. Reason: Task ':buildIndices' uses this output of task ':releasesTemplates' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
build	19-Jun-2026 11:36:07	  - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB749-JOB1/build/resources/help_build/help/html/whatsNew.html'. Reason: Task ':buildIndices' uses this output of task ':releasesTemplates' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
build	19-Jun-2026 11:36:07	Stripping rc/test/etc for TEST
build	19-Jun-2026 11:36:07	Looking in /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB749-JOB1/help/markdown/whatsnew/whatsnew-TEST.md
build	19-Jun-2026 11:36:07	
build	19-Jun-2026 11:36:07	> Task :prepare
build	19-Jun-2026 11:36:09	
build	19-Jun-2026 11:36:09	> Task :compileJava
build	19-Jun-2026 11:36:09	Setting target compatibility to 11
error	19-Jun-2026 11:36:13	Note: Some input files use or override a deprecated API.
error	19-Jun-2026 11:36:13	Note: Recompile with -Xlint:deprecation for details.
error	19-Jun-2026 11:36:13	Note: Some input files use unchecked or unsafe operations.
error	19-Jun-2026 11:36:13	Note: Recompile with -Xlint:unchecked for details.
build	19-Jun-2026 11:36:18	
build	19-Jun-2026 11:36:18	> Task :compileTestJava
build	19-Jun-2026 11:36:18	Execution optimizations have been disabled for task ':compileTestJava' to ensure correctness due to the following reasons:
build	19-Jun-2026 11:36:18	  - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB749-JOB1/build/clover/clover-classes'. Reason: Task ':compileTestJava' uses this output of task ':compileCloverJava' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
build	19-Jun-2026 11:36:18	  - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB749-JOB1/build/clover/clover-test-instr'. Reason: Task ':compileTestJava' uses this output of task ':cloverInstrTests' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
build	19-Jun-2026 11:36:18	Setting target compatibility to 11
error	19-Jun-2026 11:36:22	Note: Some input files use or override a deprecated API.
error	19-Jun-2026 11:36:22	Note: Recompile with -Xlint:deprecation for details.
error	19-Jun-2026 11:36:22	Note: Some input files use unchecked or unsafe operations.
error	19-Jun-2026 11:36:22	Note: Recompile with -Xlint:unchecked for details.
build	19-Jun-2026 11:36:23	
build	19-Jun-2026 11:36:23	> Task :processTestResources
build	19-Jun-2026 11:36:23	Execution optimizations have been disabled for task ':processTestResources' to ensure correctness due to the following reasons:
build	19-Jun-2026 11:36:23	  - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB749-JOB1/build/resources/doc_build'. Reason: Task ':processTestResources' uses this output of task ':convertMdFiles' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
build	19-Jun-2026 11:36:23	  - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB749-JOB1/build/resources/doc_build'. Reason: Task ':processTestResources' uses this output of task ':copyDocs' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
build	19-Jun-2026 11:36:23	  - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB749-JOB1/build/resources/help_build'. Reason: Task ':processTestResources' uses this output of task ':buildIndices' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
build	19-Jun-2026 11:36:23	  - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB749-JOB1/build/resources/help_build'. Reason: Task ':processTestResources' uses this output of task ':copyHelp' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
build	19-Jun-2026 11:36:23	  - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB749-JOB1/build/resources/help_build'. Reason: Task ':processTestResources' uses this output of task ':releasesTemplates' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
build	19-Jun-2026 11:36:23	  - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB749-JOB1/build/resources/resources_build'. Reason: Task ':processTestResources' uses this output of task ':copyChannelResources' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
build	19-Jun-2026 11:36:23	  - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB749-JOB1/build/resources/resources_build'. Reason: Task ':processTestResources' uses this output of task ':copyResources' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
build	19-Jun-2026 11:36:23	  - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB749-JOB1/build/resources/resources_build'. Reason: Task ':processTestResources' uses this output of task ':createBuildProperties' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
build	19-Jun-2026 11:36:23	
build	19-Jun-2026 11:36:23	> Task :testClasses
build	19-Jun-2026 11:36:25	
build	19-Jun-2026 11:36:25	> Task :testTask0
build	19-Jun-2026 11:36:25	Running tests WITH clover
error	19-Jun-2026 11:36:27	WARNING: An illegal reflective access operation has occurred
error	19-Jun-2026 11:36:27	WARNING: Illegal reflective access by jalview.gui.Desktop (file:/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB749-JOB1/build/clover/clover-classes/) to field sun.awt.X11.XToolkit.awtAppClassName
error	19-Jun-2026 11:36:27	WARNING: Please consider reporting this to the maintainers of jalview.gui.Desktop
error	19-Jun-2026 11:36:27	WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
error	19-Jun-2026 11:36:27	WARNING: All illegal access operations will be denied in a future release
build	19-Jun-2026 11:36:46	
build	19-Jun-2026 11:36:46	Gradle suite > Gradle test > jalview.ws.dbsources.EBIAlphaFoldTest.checkImportPAEForStructure[4](examples/AlphaFold/AF-0000000203848083-model_v1.cif, examples/AlphaFold/AF-0000000203848083-predicted_aligned_error_v1.json) FAILED
build	19-Jun-2026 11:36:46	    java.lang.AssertionError:  no contact map found for AF-0000000203848083-model_v1|B expected [1] but found [0]
build	19-Jun-2026 11:36:46	        at org.testng.Assert.fail(Assert.java:94)
build	19-Jun-2026 11:36:46	        at org.testng.Assert.failNotEquals(Assert.java:496)
build	19-Jun-2026 11:36:46	        at org.testng.Assert.assertEquals(Assert.java:125)
build	19-Jun-2026 11:36:46	        at org.testng.Assert.assertEquals(Assert.java:372)
build	19-Jun-2026 11:36:46	        at jalview.ws.dbsources.EBIAlphaFoldTest.__CLR4_4_173ljzu3rpu(EBIAlphaFoldTest.java:158)
build	19-Jun-2026 11:36:46	        at jalview.ws.dbsources.EBIAlphaFoldTest.checkImportPAEForStructure(EBIAlphaFoldTest.java:127)
build	19-Jun-2026 11:36:48	
build	19-Jun-2026 11:36:48	Gradle suite > Gradle test > jalview.ws.dbsources.EBIAlphaFoldTest.checkImportPAEToStructure[3](examples/AlphaFold/AF-Q5VSL9-F1-model_v4.pdb, examples/AlphaFold/AF-Q5VSL9-F1-predicted_aligned_error_v4_cmp.json) FAILED
build	19-Jun-2026 11:36:48	    java.lang.AssertionError: Exception importing paefile 'examples/AlphaFold/AF-Q5VSL9-F1-predicted_aligned_error_v4_cmp.json'
build	19-Jun-2026 11:36:48	        at org.testng.Assert.fail(Assert.java:83)
build	19-Jun-2026 11:36:48	        at jalview.ws.dbsources.EBIAlphaFoldTest.__CLR4_4_1rvd1wm3rpc(EBIAlphaFoldTest.java:95)
build	19-Jun-2026 11:36:48	        at jalview.ws.dbsources.EBIAlphaFoldTest.checkImportPAEToStructure(EBIAlphaFoldTest.java:66)
build	19-Jun-2026 11:36:48	
build	19-Jun-2026 11:36:48	        Caused by:
build	19-Jun-2026 11:36:48	        java.io.IOException: Stream Closed
build	19-Jun-2026 11:36:48	            at java.base/java.io.FileInputStream.readBytes(Native Method)
build	19-Jun-2026 11:36:48	            at java.base/java.io.FileInputStream.read(FileInputStream.java:279)
build	19-Jun-2026 11:36:48	            at java.base/java.io.BufferedInputStream.fill(BufferedInputStream.java:252)
build	19-Jun-2026 11:36:48	            at java.base/java.io.BufferedInputStream.read1(BufferedInputStream.java:292)
build	19-Jun-2026 11:36:48	            at java.base/java.io.BufferedInputStream.read(BufferedInputStream.java:351)
build	19-Jun-2026 11:36:48	            at java.base/java.io.FilterInputStream.read(FilterInputStream.java:107)
build	19-Jun-2026 11:36:48	            at jalview.util.Platform.isGzipStream(Platform.java:602)
build	19-Jun-2026 11:36:48	            at jalview.util.Platform.checkForGzipStream(Platform.java:644)
build	19-Jun-2026 11:36:48	            at jalview.util.Platform.parseJSON(Platform.java:534)
build	19-Jun-2026 11:36:48	            at jalview.ws.dbsources.EBIAlfaFold.parseJSONtoPAEContactMatrix(EBIAlfaFold.java:570)
build	19-Jun-2026 11:36:48	            at jalview.ws.dbsources.EBIAlfaFold.importPaeJSONAsContactMatrixToStructure(EBIAlfaFold.java:605)
build	19-Jun-2026 11:36:48	            at jalview.ws.dbsources.EBIAlfaFold.importPaeJSONAsContactMatrixToStructure(EBIAlfaFold.java:594)
build	19-Jun-2026 11:36:48	            at jalview.ws.dbsources.EBIAlphaFoldTest.__CLR4_4_1rvd1wm3rpc(EBIAlphaFoldTest.java:89)
build	19-Jun-2026 11:36:48	            ... 1 more
error	19-Jun-2026 11:40:38	
error	19-Jun-2026 11:40:38	1845 tests completed, 2 failed
build	19-Jun-2026 11:40:38	There were failing tests. See the report at: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB749-JOB1/build/reports/tests/testTask0/index.html
build	19-Jun-2026 11:40:40	
build	19-Jun-2026 11:40:40	> Task :testTask1
build	19-Jun-2026 11:40:40	Running tests WITH clover
error	19-Jun-2026 11:40:41	WARNING: An illegal reflective access operation has occurred
error	19-Jun-2026 11:40:41	WARNING: Illegal reflective access by jalview.gui.Desktop (file:/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB749-JOB1/build/clover/clover-classes/) to field sun.awt.X11.XToolkit.awtAppClassName
error	19-Jun-2026 11:40:41	WARNING: Please consider reporting this to the maintainers of jalview.gui.Desktop
error	19-Jun-2026 11:40:41	WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
error	19-Jun-2026 11:40:41	WARNING: All illegal access operations will be denied in a future release
build	19-Jun-2026 11:42:49	
build	19-Jun-2026 11:42:49	> Task :testTask2
build	19-Jun-2026 11:42:49	Running tests WITH clover
build	19-Jun-2026 11:42:52	
build	19-Jun-2026 11:42:52	> Task :testTask3
build	19-Jun-2026 11:42:52	Running tests WITH clover
error	19-Jun-2026 11:42:54	WARNING: An illegal reflective access operation has occurred
error	19-Jun-2026 11:42:54	WARNING: Illegal reflective access by jalview.gui.Desktop (file:/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB749-JOB1/build/clover/clover-classes/) to field sun.awt.X11.XToolkit.awtAppClassName
error	19-Jun-2026 11:42:54	WARNING: Please consider reporting this to the maintainers of jalview.gui.Desktop
error	19-Jun-2026 11:42:54	WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
error	19-Jun-2026 11:42:54	WARNING: All illegal access operations will be denied in a future release
build	19-Jun-2026 11:43:40	
build	19-Jun-2026 11:43:40	> Task :test NO-SOURCE
build	19-Jun-2026 11:43:40	┌──────────────────────────────────────────────────────────────────────────────────────────────────────────────────────┐
build	19-Jun-2026 11:43:40	│jalview:testTask0 results: FAILURE (1845 tests, 1843 successes, 2 failures, 0 skipped) in 4 minutes, 14.328 seconds   │
build	19-Jun-2026 11:43:40	│Report file: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB749-JOB1/build/reports/tests/testTask0/index.html│
build	19-Jun-2026 11:43:40	├──────────────────────────────────────────────────────────────────────────────────────────────────────────────────────┤
build	19-Jun-2026 11:43:40	│jalview:testTask1 results: SUCCESS (62 tests, 62 successes, 0 failures, 0 skipped) in 2 minutes, 8.871 seconds        │
build	19-Jun-2026 11:43:40	│Report file: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB749-JOB1/build/reports/tests/testTask1/index.html│
build	19-Jun-2026 11:43:40	├──────────────────────────────────────────────────────────────────────────────────────────────────────────────────────┤
build	19-Jun-2026 11:43:40	│jalview:testTask2 results: SUCCESS (1 tests, 1 successes, 0 failures, 0 skipped) in 3.176 seconds                     │
build	19-Jun-2026 11:43:40	│Report file: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB749-JOB1/build/reports/tests/testTask2/index.html│
build	19-Jun-2026 11:43:40	├──────────────────────────────────────────────────────────────────────────────────────────────────────────────────────┤
build	19-Jun-2026 11:43:40	│jalview:testTask3 results: SUCCESS (25 tests, 25 successes, 0 failures, 0 skipped) in 49.736 seconds                  │
build	19-Jun-2026 11:43:40	│Report file: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB749-JOB1/build/reports/tests/testTask3/index.html│
build	19-Jun-2026 11:43:40	├──────────────────────────────────────────────────────────────────────────────────────────────────────────────────────┤
build	19-Jun-2026 11:43:40	│OVERALL: results: FAILURE (1933 tests, 1931 successes, 2 failures, 0 skipped) in 6 minutes, 76.111 seconds            │
build	19-Jun-2026 11:43:40	└──────────────────────────────────────────────────────────────────────────────────────────────────────────────────────┘
error	19-Jun-2026 11:43:40	
error	19-Jun-2026 11:43:40	FAILURE: Build failed with an exception.
error	19-Jun-2026 11:43:40	
error	19-Jun-2026 11:43:40	* Where:
error	19-Jun-2026 11:43:40	Build file '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB749-JOB1/build.gradle' line: 1967
error	19-Jun-2026 11:43:40	
error	19-Jun-2026 11:43:40	* What went wrong:
error	19-Jun-2026 11:43:40	Failed tests!
error	19-Jun-2026 11:43:40	
error	19-Jun-2026 11:43:40	* Try:
error	19-Jun-2026 11:43:40	> Run with --stacktrace option to get the stack trace.
error	19-Jun-2026 11:43:40	> Run with --info or --debug option to get more log output.
error	19-Jun-2026 11:43:40	> Run with --scan to get full insights.
error	19-Jun-2026 11:43:40	
error	19-Jun-2026 11:43:40	* Get more help at https://help.gradle.org
build	19-Jun-2026 11:43:40	
build	19-Jun-2026 11:43:40	Deprecated Gradle features were used in this build, making it incompatible with Gradle 8.0.
build	19-Jun-2026 11:43:40	
build	19-Jun-2026 11:43:40	You can use '--warning-mode all' to show the individual deprecation warnings and determine if they come from your own scripts or plugins.
build	19-Jun-2026 11:43:40	
build	19-Jun-2026 11:43:40	See https://docs.gradle.org/7.4.2/userguide/command_line_interface.html#sec:command_line_warnings
build	19-Jun-2026 11:43:40	
build	19-Jun-2026 11:43:40	Execution optimizations have been disabled for 5 invalid unit(s) of work during this build to ensure correctness.
build	19-Jun-2026 11:43:40	Please consult deprecation warnings for more details.
error	19-Jun-2026 11:43:40	
error	19-Jun-2026 11:43:40	BUILD FAILED in 8m 27s
build	19-Jun-2026 11:43:40	21 actionable tasks: 20 executed, 1 up-to-date
simple	19-Jun-2026 11:43:41	
simple	19-Jun-2026 11:43:41	Failing task since return code of [/home/bamboo/buildtools/x11-gradle/bin/gradle -Pclover=true -PJAVA_VERSION=11 -Ptestng_excluded_groups=Not-bamboo clean cleanTest test] was 1 while expected 0
simple	19-Jun-2026 11:43:41	Finished task 'Run tests with openclover under gradle' with result: Failed
simple	19-Jun-2026 11:43:41	Starting task 'Clover Report' of type 'org.jfrog.bamboo.bamboo-artifactory-plugin:artifactoryGradleTask'
simple	19-Jun-2026 11:43:41	Bamboo Artifactory Plugin version: 2.6.2
command	19-Jun-2026 11:43:41	Beginning to execute external process for build 'Jalview Builds - Gradle Develop Build - patch-JAL-4410_multimers_from_3dbeacons - Clover and Tests #3 (JB-GDB749-JOB1-3)'\n ... running command line: \n/home/bamboo/buildtools/x11-gradle/bin/gradle --no-daemon -Pclover=true -PJAVA_VERSION=11 cloverReport\n ... in: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB749-JOB1\n ... using extra environment variables: \nbamboo_planRepository_1_branch=patch/JAL-4410_multimers_from_3dbeacons\nbamboo_capability_system_builder_maven_Artifactory_Maven_3=/usr\nbamboo_repository_48169043_branch_name=patch/JAL-4410_multimers_from_3dbeacons\nCATALINA_PID=/home/bamboo/latest/work/bamboo.pid\nbamboo_planRepository_1_branchDisplayName=patch/JAL-4410_multimers_from_3dbeacons\nbamboo_repository_revision_number=d9d218fe9b518987c14acfe100646789b1dbc30f\nbamboo_repository_48169043_previous_revision_number=648892615bcaf223b2b6986392066ddbfcfb6745\nbamboo_resultsUrl=https://builds.jalview.org/browse/JB-GDB749-JOB1-3\nJAVA_OPTS=-Xms512m -Xmx1024m    -Dbamboo.home=/srv/bamboo/bamboo-home -Djdk.tls.ephemeralDHKeySize=2048\nbamboo_build_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB749-JOB1\nbamboo_planRepository_1_name=Jalview Gitlab\nbamboo_buildKey=JB-GDB749-JOB1\nbamboo_shortPlanName=patch-JAL-4410_multimers_from_3dbeacons\nbamboo_planRepository_name=Jalview Gitlab\nLOGNAME=bamboo\nbamboo_buildNumber=3\nPWD=/\nbamboo_capability_system_builder_command_Eclipse_2019_09=/home/bamboo/buildtools/eclipse/jee-2019-09/eclipse/eclipse\nbamboo_repository_48169043_git_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git\nbamboo_shortJobName=Clover and Tests\nbamboo_buildResultsUrl=https://builds.jalview.org/browse/JB-GDB749-JOB1-3\nbamboo_planRepository_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git\nSHELL=/bin/bash\nbamboo_agentId=196609\nbamboo_planName=Jalview Builds - Gradle Develop Build - patch-JAL-4410_multimers_from_3dbeacons\nbamboo_shortPlanKey=GDB749\nbamboo_shortJobKey=JOB1\nbamboo_capability_system_jdk_OpenJDK_11=/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk\nbamboo_planRepository_revision=d9d218fe9b518987c14acfe100646789b1dbc30f\nbamboo_buildTimeStamp=2026-06-19T11:35:12.343+01:00\nbamboo_repository_previous_revision_number=648892615bcaf223b2b6986392066ddbfcfb6745\nbamboo_repository_48169043_name=Jalview Gitlab\nbamboo_planRepository_previousRevision=648892615bcaf223b2b6986392066ddbfcfb6745\nbamboo_repository_git_branch=patch/JAL-4410_multimers_from_3dbeacons\nbamboo_buildResultKey=JB-GDB749-JOB1-3\nbamboo_repository_branch_name=patch/JAL-4410_multimers_from_3dbeacons\nbamboo_buildPlanName=Jalview Builds - Gradle Develop Build - patch-JAL-4410_multimers_from_3dbeacons - Clover and Tests\nbamboo_capability_system_builder_ant_j11_Ant=/home/bamboo/buildtools/j11/ant-j11\nbamboo_planRepository_1_revision=d9d218fe9b518987c14acfe100646789b1dbc30f\nSHLVL=1\nbamboo_capability_system_builder_ant_x11_Ant=/home/bamboo/buildtools/x11-ant\nbamboo_repository_name=Jalview Gitlab\nbamboo_build_commandline_org_jfrog_bamboo_bamboo_artifactory_plugin_artifactoryGradleTask_2=/home/bamboo/buildtools/x11-gradle/bin/gradle -Pclover=true -PJAVA_VERSION=11 -Ptestng_excluded_groups=Not-bamboo clean cleanTest test\nJAVA_HOME=/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/\nLANG=en_GB.UTF-8\nbamboo_buildFailed=true\nbamboo_capability_system_jdk_OpenJDK_8=/home/bamboo/buildtools/jdk/jdk-8-linux-x64/jdk\nbamboo_planRepository_branch=patch/JAL-4410_multimers_from_3dbeacons\nbamboo_agentWorkingDirectory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609\nbamboo_jobFailed=true\nbamboo_capability_system_git_executable=/bin/git\nbamboo_repository_48169043_git_branch=patch/JAL-4410_multimers_from_3dbeacons\nbamboo_repository_git_username=\nbamboo_planRepository_1_previousRevision=648892615bcaf223b2b6986392066ddbfcfb6745\nbamboo_planRepository_branchDisplayName=patch/JAL-4410_multimers_from_3dbeacons\nbamboo_planRepository_1_type=gitv2\nbamboo_planRepository_branchName=patch/JAL-4410_multimers_from_3dbeacons\n_=/usr/bin/java\nbamboo_capability_system_builder_ant_j11_x11_Ant=/home/bamboo/buildtools/j11/x11-ant-j11\nbamboo_repository_48169043_revision_number=d9d218fe9b518987c14acfe100646789b1dbc30f\nbamboo_capability_system_builderivy_Ivy=/usr\nbamboo_repository_48169043_git_username=\nbamboo_plan_storageTag=plan-47972517\nbamboo_capability_system_builder_gradle_Gradle=/home/bamboo/buildtools/gradle\nbamboo_hg_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_hg-repositories-cache\nbamboo_planRepository_1_username=\nbamboo_planRepository_type=gitv2\nUSER=bamboo\nbamboo_git_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_git-repositories-cache\nbamboo_repository_git_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git\nbamboo_capability_system_builder_ant_Ant=/usr/share/ant\nbamboo_capability_system_builder_mvn3_Maven_3=/usr/share/maven\nbamboo_tmp_directory=/srv/bamboo/bamboo-home/temp\nbamboo_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB749-JOB1\nbamboo_planKey=JB-GDB749\nbamboo_planRepository_1_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git\nbamboo_planRepository_username=\nHOME=/home/bamboo\nbamboo_planRepository_1_branchName=patch/JAL-4410_multimers_from_3dbeacons\nPATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin\n
build	19-Jun-2026 11:43:41	2414
build	19-Jun-2026 11:43:46	
build	19-Jun-2026 11:43:46	> Configure project :
build	19-Jun-2026 11:43:46	Using properties from file './utils/channels/default/channel_gradle.properties'
build	19-Jun-2026 11:43:46	JALVIEW_VERSION is set to '2.11.5.1'
build	19-Jun-2026 11:43:46	HEADLESS BUILD
build	19-Jun-2026 11:43:46	J2S ENABLED
build	19-Jun-2026 11:43:46	Using a LOCAL profile.
build	19-Jun-2026 11:43:47	eclipseDir exists
build	19-Jun-2026 11:43:49	
build	19-Jun-2026 11:43:49	> Task :cloverHtmlReport
build	19-Jun-2026 11:43:49	OpenClover Version 4.4.1, built on October 11 2019 (build-1020)
build	19-Jun-2026 11:43:50	Writing HTML report to '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB749-JOB1/build/reports/clover'
build	19-Jun-2026 11:44:36	Done. Processed 117 packages in 46039ms (393ms per package).
build	19-Jun-2026 11:44:42	
build	19-Jun-2026 11:44:42	> Task :cloverXmlReport
build	19-Jun-2026 11:44:42	OpenClover Version 4.4.1, built on October 11 2019 (build-1020)
build	19-Jun-2026 11:44:44	Writing report to '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB749-JOB1/build/reports/clover/clover.xml'
build	19-Jun-2026 11:44:45	
build	19-Jun-2026 11:44:45	> Task :cloverReport
build	19-Jun-2026 11:44:45	
build	19-Jun-2026 11:44:45	Deprecated Gradle features were used in this build, making it incompatible with Gradle 8.0.
build	19-Jun-2026 11:44:45	
build	19-Jun-2026 11:44:45	You can use '--warning-mode all' to show the individual deprecation warnings and determine if they come from your own scripts or plugins.
build	19-Jun-2026 11:44:45	
build	19-Jun-2026 11:44:45	See https://docs.gradle.org/7.4.2/userguide/command_line_interface.html#sec:command_line_warnings
build	19-Jun-2026 11:44:45	
build	19-Jun-2026 11:44:45	BUILD SUCCESSFUL in 1m 3s
build	19-Jun-2026 11:44:45	2 actionable tasks: 2 executed
simple	19-Jun-2026 11:44:45	Finished task 'Clover Report' with result: Success
simple	19-Jun-2026 11:44:45	Starting task 'TestNG Parser' of type 'com.atlassian.bamboo.plugins.testresultparser:task.testresultparser.testng'
simple	19-Jun-2026 11:44:45	Parsing test results under /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB749-JOB1...
simple	19-Jun-2026 11:44:45	Failing task since 2 failing test cases were found.
simple	19-Jun-2026 11:44:45	Finished task 'TestNG Parser' with result: Failed
simple	19-Jun-2026 11:44:45	Running post build plugin 'NCover Results Collector'
simple	19-Jun-2026 11:44:45	Running post build plugin 'Artifact Copier'
simple	19-Jun-2026 11:44:45	Publishing an artifact: Clover Report (System)
simple	19-Jun-2026 11:44:47	Finished publishing of artifact Job artifact: [Clover Report (System)], pattern: [**/*.*] anchored at: [build/reports/clover] in 1.809 s
simple	19-Jun-2026 11:44:47	Publishing an artifact: TestNG report
error	19-Jun-2026 11:44:47	Unable to publish artifact [TestNG report]: the source directory /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB749-JOB1/build/reports/tests/test does not exist.
simple	19-Jun-2026 11:44:47	The artifact hasn't been successfully published after 3.277 ms
simple	19-Jun-2026 11:44:47	Running post build plugin 'Artifactory Release Management Staging'
simple	19-Jun-2026 11:44:47	Running post build plugin 'Artifactory Build Info Copier'
simple	19-Jun-2026 11:44:47	Running post build plugin 'Artifactory Gradle Properties Info Copier'
simple	19-Jun-2026 11:44:47	Running post build plugin 'npm Cache Cleanup'
simple	19-Jun-2026 11:44:47	Running post build plugin 'Clover Results Collector'
simple	19-Jun-2026 11:44:47	Running post build plugin 'Docker Container Cleanup'
simple	19-Jun-2026 11:44:47	Finalising the build...
simple	19-Jun-2026 11:44:47	Stopping timer.
simple	19-Jun-2026 11:44:47	Build JB-GDB749-JOB1-3 completed.
simple	19-Jun-2026 11:44:47	Running on server: post build plugin 'NCover Results Collector'
simple	19-Jun-2026 11:44:47	Running on server: post build plugin 'Build Hanging Detection Configuration'
simple	19-Jun-2026 11:44:47	Running on server: post build plugin 'Clover Delta Calculator'
simple	19-Jun-2026 11:44:47	Running on server: post build plugin 'Maven Dependencies Postprocessor'
simple	19-Jun-2026 11:44:47	All post build plugins have finished
simple	19-Jun-2026 11:44:47	Generating build results summary...
simple	19-Jun-2026 11:44:47	Saving build results to disk...
simple	19-Jun-2026 11:44:47	Logging substituted variables...
simple	19-Jun-2026 11:44:47	Indexing build results...
simple	19-Jun-2026 11:44:47	Finished building JB-GDB749-JOB1-3.