Classes

Class	Line #	Total Statements	Complexity	TOTAL Coverage	Actions
Bond	25	12	2	0.00%	Show methods

Class Bond

Class Bond	Line # 25	Total Statements 12	Complexity 2	TOTAL Coverage 0.00%
Bond(Atom,Atom)   Bond(Atom,Atom)	3939	6.06	1.01	0.0 0.00%
translate(float,float,float) : void   translate(float,float,float) : void	7171	6.06	1.01	0.0 0.00%

 

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1		/*
2		* Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3		* Copyright (C) $$Year-Rel$$ The Jalview Authors
4		*
5		* This file is part of Jalview.
6		*
7		* Jalview is free software: you can redistribute it and/or
8		* modify it under the terms of the GNU General Public License
9		* as published by the Free Software Foundation, either version 3
10		* of the License, or (at your option) any later version.
11		*
12		* Jalview is distributed in the hope that it will be useful, but
13		* WITHOUT ANY WARRANTY; without even the implied warranty
14		* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15		* PURPOSE. See the GNU General Public License for more details.
16		*
17		* You should have received a copy of the GNU General Public License
18		* along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19		* The Jalview Authors are detailed in the 'AUTHORS' file.
20		*/
21		package mc_view;
22
23		import java.awt.Color;
24
		0% Uncovered Elements: 14 (14) Complexity: 2 Complexity Density: 0.17
25		public class Bond
26		{
27		float[] start;
28
29		float[] end;
30
31		Color startCol = Color.lightGray;
32
33		Color endCol = Color.lightGray;
34
35		public Atom at1;
36
37		public Atom at2;
38
		0% Uncovered Elements: 6 (6) Complexity: 1 Complexity Density: 0.17
39	0	public Bond(Atom at1, Atom at2)...
40		{
41	0	this.start = new float[] { at1.x, at1.y, at1.z };
42	0	this.end = new float[] { at2.x, at2.y, at2.z };
43	0	this.startCol = at1.color;
44	0	this.endCol = at2.color;
45	0	this.at1 = at1;
46	0	this.at2 = at2;
47		}
48
49		/*
50		* public Bond(Bond bond) { this.start = new float[3];
51		*
52		* this.start[0] = bond.start[0]; this.start[1] = bond.start[1]; this.start[2]
53		* = bond.start[2];
54		*
55		* this.end = new float[3];
56		*
57		* this.end[0] = bond.end[0]; this.end[1] = bond.end[1]; this.end[2] =
58		* bond.end[2];
59		*
60		* this.startCol = bond.startCol; this.endCol = bond.endCol; }
61		*
62		* public float length() { float len = ((end[0] - start[0]) * (end[0] -
63		* start[0])) + ((end[1] - start[1]) * (end[1] - start[1])) + ((end[2] -
64		* start[2]) * (end[2] - start[2]));
65		*
66		* len = (float) (Math.sqrt(len));
67		*
68		* return len; }
69		*/
70
		0% Uncovered Elements: 6 (6) Complexity: 1 Complexity Density: 0.17
71	0	public void translate(float x, float y, float z)...
72		{
73	0	start[0] = start[0] + x;
74	0	end[0] = end[0] + x;
75
76	0	start[1] = start[1] + y;
77	0	end[1] = end[1] + y;
78
79	0	start[2] = start[2] + z;
80	0	end[2] = end[2] + z;
81		}
82		}