Classes

Class	Line #	Total Statements	Complexity	TOTAL Coverage	Actions
SiftsSettings	28	11	10	0.00%	Show methods

Class SiftsSettings

Class SiftsSettings	Line # 28	Total Statements 11	Complexity 10	TOTAL Coverage 0.00%
getInstance() : SiftsSettings   getInstance() : SiftsSettings	3535	1.01	1.01	0.0 0.00%
SiftsSettings()   SiftsSettings()	4040	0.00	1.01	-1.0 -1.0 -
isMapWithSifts() : boolean   isMapWithSifts() : boolean	5353	1.01	1.01	0.0 0.00%
setMapWithSifts(boolean) : void   setMapWithSifts(boolean) : void	5858	1.01	1.01	0.0 0.00%
getSiftDownloadDirectory() : String   getSiftDownloadDirectory() : String	6363	1.01	1.01	0.0 0.00%
setSiftDownloadDirectory(String) : void   setSiftDownloadDirectory(String) : void	6868	1.01	1.01	0.0 0.00%
getCacheThresholdInDays() : int   getCacheThresholdInDays() : int	7373	1.01	1.01	0.0 0.00%
setCacheThresholdInDays(String) : void   setCacheThresholdInDays(String) : void	7878	2.02	1.01	0.0 0.00%
getFailSafePIDThreshold() : int   getFailSafePIDThreshold() : int	8585	1.01	1.01	0.0 0.00%
setFailSafePIDThreshold(String) : void   setFailSafePIDThreshold(String) : void	9090	2.02	1.01	0.0 0.00%

 

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1		/*
2		* Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3		* Copyright (C) $$Year-Rel$$ The Jalview Authors
4		*
5		* This file is part of Jalview.
6		*
7		* Jalview is free software: you can redistribute it and/or
8		* modify it under the terms of the GNU General Public License
9		* as published by the Free Software Foundation, either version 3
10		* of the License, or (at your option) any later version.
11		*
12		* Jalview is distributed in the hope that it will be useful, but
13		* WITHOUT ANY WARRANTY; without even the implied warranty
14		* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15		* PURPOSE. See the GNU General Public License for more details.
16		*
17		* You should have received a copy of the GNU General Public License
18		* along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19		* The Jalview Authors are detailed in the 'AUTHORS' file.
20		*/
21		package jalview.ws.sifts;
22
23		import java.util.Objects;
24
25		import jalview.bin.ApplicationSingletonProvider;
26		import jalview.bin.ApplicationSingletonProvider.ApplicationSingletonI;
27
		0% Uncovered Elements: 21 (21) Complexity: 10 Complexity Density: 0.91
28		public class SiftsSettings implements ApplicationSingletonI
29		{
30		/**
31		* Constructor
32		*
33		* @return
34		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
35	0	private static SiftsSettings getInstance()...
36		{
37	0	return ApplicationSingletonProvider.getInstance(SiftsSettings.class);
38		}
39
		- Uncovered Elements: 0 (0) Complexity: 1 Complexity Density: -
40	0	private SiftsSettings()...
41		{
42		// singleton; use getInstance()
43		}
44
45		private boolean mapWithSifts = false;
46
47		private String siftDownloadDirectory;
48
49		private int cacheThresholdInDays;
50
51		private int failSafePIDThreshold;
52
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
53	0	public static boolean isMapWithSifts()...
54		{
55	0	return getInstance().mapWithSifts;
56		}
57
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
58	0	public static void setMapWithSifts(boolean mapWithSifts)...
59		{
60	0	getInstance().mapWithSifts = mapWithSifts;
61		}
62
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
63	0	public static String getSiftDownloadDirectory()...
64		{
65	0	return getInstance().siftDownloadDirectory;
66		}
67
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
68	0	public static void setSiftDownloadDirectory(String siftDownloadDirectory)...
69		{
70	0	getInstance().siftDownloadDirectory = siftDownloadDirectory;
71		}
72
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
73	0	public static int getCacheThresholdInDays()...
74		{
75	0	return getInstance().cacheThresholdInDays;
76		}
77
		0% Uncovered Elements: 2 (2) Complexity: 1 Complexity Density: 0.5
78	0	public static void setCacheThresholdInDays(String cacheThresholdInDays)...
79		{
80	0	Objects.requireNonNull(cacheThresholdInDays);
81	0	getInstance().cacheThresholdInDays = Integer
82		.valueOf(cacheThresholdInDays);
83		}
84
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
85	0	public static int getFailSafePIDThreshold()...
86		{
87	0	return getInstance().failSafePIDThreshold;
88		}
89
		0% Uncovered Elements: 2 (2) Complexity: 1 Complexity Density: 0.5
90	0	public static void setFailSafePIDThreshold(String failSafePIDThreshold)...
91		{
92	0	Objects.requireNonNull(failSafePIDThreshold);
93	0	getInstance().failSafePIDThreshold = Integer
94		.valueOf(failSafePIDThreshold);
95		}
96		}