Classes

Class	Line #	Total Statements	Complexity	TOTAL Coverage	Actions
JabaPreset	32	14	11	0.00%	Show methods

Class JabaPreset

Class JabaPreset	Line # 32	Total Statements 14	Complexity 11	TOTAL Coverage 0.00%
JabaPreset(Jws2Instance,Preset)   JabaPreset(Jws2Instance,Preset)	3838	2.02	1.01	0.0 0.00%
getName() : String   getName() : String	4444	1.01	1.01	0.0 0.00%
getDescription() : String   getDescription() : String	5050	1.01	1.01	0.0 0.00%
getApplicableUrls() : String[]   getApplicableUrls() : String[]	5656	1.01	1.01	0.0 0.00%
getSourceFile() : String   getSourceFile() : String	6262	1.01	1.01	0.0 0.00%
isModifiable() : boolean   isModifiable() : boolean	6868	1.01	1.01	0.0 0.00%
setSourceFile(String) : void   setSourceFile(String) : void	7474	1.01	1.01	0.0 0.00%
getArguments() : List<ArgumentI>   getArguments() : List<ArgumentI>	8282	4.04	2.02	0.0 0.00%
setArguments(List<ArgumentI>) : void   setArguments(List<ArgumentI>) : void	9797	1.01	1.01	0.0 0.00%
getJabaPreset() : Preset   getJabaPreset() : Preset	104104	1.01	1.01	0.0 0.00%

 

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1		/*
2		* Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3		* Copyright (C) $$Year-Rel$$ The Jalview Authors
4		*
5		* This file is part of Jalview.
6		*
7		* Jalview is free software: you can redistribute it and/or
8		* modify it under the terms of the GNU General Public License
9		* as published by the Free Software Foundation, either version 3
10		* of the License, or (at your option) any later version.
11		*
12		* Jalview is distributed in the hope that it will be useful, but
13		* WITHOUT ANY WARRANTY; without even the implied warranty
14		* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15		* PURPOSE. See the GNU General Public License for more details.
16		*
17		* You should have received a copy of the GNU General Public License
18		* along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19		* The Jalview Authors are detailed in the 'AUTHORS' file.
20		*/
21		package jalview.ws.jws2;
22
23		import jalview.util.MessageManager;
24		import jalview.ws.jws2.jabaws2.Jws2Instance;
25		import jalview.ws.params.ArgumentI;
26		import jalview.ws.params.WsParamSetI;
27
28		import java.util.List;
29
30		import compbio.metadata.Preset;
31
		0% Uncovered Elements: 24 (24) Complexity: 11 Complexity Density: 0.79
32		public class JabaPreset implements WsParamSetI
33		{
34		Preset p = null;
35
36		Jws2Instance service;
37
		0% Uncovered Elements: 2 (2) Complexity: 1 Complexity Density: 0.5
38	0	public JabaPreset(Jws2Instance svc, Preset preset)...
39		{
40	0	service = svc;
41	0	p = preset;
42		}
43
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
44	0	@Override...
45		public String getName()
46		{
47	0	return p.getName();
48		}
49
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
50	0	@Override...
51		public String getDescription()
52		{
53	0	return p.getDescription();
54		}
55
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
56	0	@Override...
57		public String[] getApplicableUrls()
58		{
59	0	return new String[] { service.getUri() };
60		}
61
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
62	0	@Override...
63		public String getSourceFile()
64		{
65	0	return null;
66		}
67
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
68	0	@Override...
69		public boolean isModifiable()
70		{
71	0	return false;
72		}
73
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
74	0	@Override...
75		public void setSourceFile(String newfile)
76		{
77	0	throw new Error(MessageManager
78		.formatMessage("error.cannot_set_source_file_for", new String[]
79		{ getClass().toString() }));
80		}
81
		0% Uncovered Elements: 4 (4) Complexity: 2 Complexity Density: 0.5
82	0	@Override...
83		public List<ArgumentI> getArguments()
84		{
85	0	try
86		{
87	0	return JabaParamStore.getJwsArgsfromJaba(
88		p.getArguments(service.getRunnerConfig()));
89		} catch (Exception e)
90		{
91	0	e.printStackTrace();
92	0	throw new Error(MessageManager
93		.getString("error.mismatch_service_instance_preset"));
94		}
95		}
96
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
97	0	@Override...
98		public void setArguments(List<ArgumentI> args)
99		{
100	0	throw new Error(MessageManager
101		.getString("error.cannot_set_params_for_ws_preset"));
102		}
103
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
104	0	public Preset getJabaPreset()...
105		{
106	0	return p;
107		}
108		}