Classes

Class	Line #	Total Statements	Complexity	TOTAL Coverage	Actions
EmblSource	31	5	5	0.00%	Show methods

Class EmblSource

Class EmblSource	Line # 31	Total Statements 5	Complexity 5	TOTAL Coverage 0.00%
EmblSource()   EmblSource()	3434	1.01	1.01	0.0 0.00%
getDbSource() : String   getDbSource() : String	4444	1.01	1.01	0.0 0.00%
getSequenceRecords(String) : AlignmentI   getSequenceRecords(String) : AlignmentI	5555	1.01	1.01	0.0 0.00%
getTestQuery() : String   getTestQuery() : String	6565	1.01	1.01	0.0 0.00%
getDbName() : String   getDbName() : String	7171	1.01	1.01	0.0 0.00%

 

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1		/*
2		* Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3		* Copyright (C) $$Year-Rel$$ The Jalview Authors
4		*
5		* This file is part of Jalview.
6		*
7		* Jalview is free software: you can redistribute it and/or
8		* modify it under the terms of the GNU General Public License
9		* as published by the Free Software Foundation, either version 3
10		* of the License, or (at your option) any later version.
11		*
12		* Jalview is distributed in the hope that it will be useful, but
13		* WITHOUT ANY WARRANTY; without even the implied warranty
14		* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15		* PURPOSE. See the GNU General Public License for more details.
16		*
17		* You should have received a copy of the GNU General Public License
18		* along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19		* The Jalview Authors are detailed in the 'AUTHORS' file.
20		*/
21		package jalview.ws.dbsources;
22
23		import jalview.datamodel.AlignmentI;
24		import jalview.datamodel.DBRefSource;
25
26
27		/**
28		* @author JimP
29		*
30		*/
		0% Uncovered Elements: 10 (10) Complexity: 5 Complexity Density: 1
31		public class EmblSource extends EmblFlatfileSource // was EmblXmlSource
32		{
33
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
34	0	public EmblSource()...
35		{
36	0	super();
37		}
38
39		/*
40		* (non-Javadoc)
41		*
42		* @see jalview.ws.DbSourceProxy#getDbSource()
43		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
44	0	@Override...
45		public String getDbSource()
46		{
47	0	return DBRefSource.EMBL;
48		}
49
50		/*
51		* (non-Javadoc)
52		*
53		* @see jalview.ws.DbSourceProxy#getSequenceRecords(java.lang.String[])
54		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
55	0	@Override...
56		public AlignmentI getSequenceRecords(String queries) throws Exception
57		{
58	0	return getEmblSequenceRecords(DBRefSource.EMBL, queries);
59
60		}
61
62		/**
63		* return LHD_CHICK coding gene
64		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
65	0	@Override...
66		public String getTestQuery()
67		{
68	0	return "X53828";
69		}
70
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
71	0	@Override...
72		public String getDbName()
73		{
74	0	return "EMBL"; // getDbSource();
75		}
76		}