Classes

Class	Line #	Total Statements	Complexity	TOTAL Coverage	Actions
EmblCdsSource	26	7	6	0.00%	Show methods

Class EmblCdsSource

Class EmblCdsSource	Line # 26	Total Statements 7	Complexity 6	TOTAL Coverage 0.00%
EmblCdsSource()   EmblCdsSource()	2929	1.01	1.01	0.0 0.00%
getDbSource() : String   getDbSource() : String	3434	1.01	1.01	0.0 0.00%
getSequenceRecords(String) : AlignmentI   getSequenceRecords(String) : AlignmentI	4040	3.03	2.02	0.0 0.00%
getTestQuery() : String   getTestQuery() : String	5454	1.01	1.01	0.0 0.00%
getDbName() : String   getDbName() : String	6060	1.01	1.01	0.0 0.00%

 

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1		/*
2		* Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3		* Copyright (C) $$Year-Rel$$ The Jalview Authors
4		*
5		* This file is part of Jalview.
6		*
7		* Jalview is free software: you can redistribute it and/or
8		* modify it under the terms of the GNU General Public License
9		* as published by the Free Software Foundation, either version 3
10		* of the License, or (at your option) any later version.
11		*
12		* Jalview is distributed in the hope that it will be useful, but
13		* WITHOUT ANY WARRANTY; without even the implied warranty
14		* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15		* PURPOSE. See the GNU General Public License for more details.
16		*
17		* You should have received a copy of the GNU General Public License
18		* along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19		* The Jalview Authors are detailed in the 'AUTHORS' file.
20		*/
21		package jalview.ws.dbsources;
22
23		import jalview.datamodel.AlignmentI;
24		import jalview.datamodel.DBRefSource;
25
		0% Uncovered Elements: 14 (14) Complexity: 6 Complexity Density: 0.86
26		public class EmblCdsSource extends EmblFlatfileSource // was EmblXmlSource
27		{
28
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
29	0	public EmblCdsSource()...
30		{
31	0	super();
32		}
33
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
34	0	@Override...
35		public String getDbSource()
36		{
37	0	return DBRefSource.EMBLCDS;
38		}
39
		0% Uncovered Elements: 5 (5) Complexity: 2 Complexity Density: 0.67
40	0	@Override...
41		public AlignmentI getSequenceRecords(String queries) throws Exception
42		{
43	0	if (queries.indexOf(".") > -1)
44		{
45	0	queries = queries.substring(0, queries.indexOf("."));
46		}
47	0	return getEmblSequenceRecords(DBRefSource.EMBLCDS, queries);
48		}
49
50
51		/**
52		* cDNA for LDHA_CHICK swissprot sequence
53		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
54	0	@Override...
55		public String getTestQuery()
56		{
57	0	return "CAA37824";
58		}
59
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
60	0	@Override...
61		public String getDbName()
62		{
63	0	return "EMBL (CDS)";
64		}
65
66		}