Classes

Class	Line #	Total Statements	Complexity	TOTAL Coverage	Actions
FeaturesDisplayed	30	19	13	0.00%	Show methods

Class FeaturesDisplayed

Class FeaturesDisplayed	Line # 30	Total Statements 19	Complexity 13	TOTAL Coverage 0.00%
FeaturesDisplayed(FeaturesDisplayedI)   FeaturesDisplayed(FeaturesDisplayedI)	3636	4.04	1.01	0.0 0.00%
FeaturesDisplayed()   FeaturesDisplayed()	4646	0.00	1.01	-1.0 -1.0 -
getVisibleFeatures() : Set<String>   getVisibleFeatures() : Set<String>	5050	1.01	1.01	0.0 0.00%
isVisible(String) : boolean   isVisible(String) : boolean	5656	1.01	1.01	0.0 0.00%
areVisible(Collection<String>) : boolean   areVisible(Collection<String>) : boolean	6262	1.01	1.01	0.0 0.00%
clear() : void   clear() : void	6868	2.02	1.01	0.0 0.00%
setAllVisible(Collection<String>) : void   setAllVisible(Collection<String>) : void	7575	2.02	1.01	0.0 0.00%
setAllRegisteredVisible() : void   setAllRegisteredVisible() : void	8282	1.01	1.01	0.0 0.00%
setVisible(String) : void   setVisible(String) : void	8888	2.02	1.01	0.0 0.00%
setHidden(String) : void   setHidden(String) : void	9595	2.02	1.01	0.0 0.00%
isRegistered(String) : boolean   isRegistered(String) : boolean	102102	1.01	1.01	0.0 0.00%
getVisibleFeatureCount() : int   getVisibleFeatureCount() : int	108108	1.01	1.01	0.0 0.00%
getRegisteredFeaturesCount() : int   getRegisteredFeaturesCount() : int	114114	1.01	1.01	0.0 0.00%

 

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1		/*
2		* Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3		* Copyright (C) $$Year-Rel$$ The Jalview Authors
4		*
5		* This file is part of Jalview.
6		*
7		* Jalview is free software: you can redistribute it and/or
8		* modify it under the terms of the GNU General Public License
9		* as published by the Free Software Foundation, either version 3
10		* of the License, or (at your option) any later version.
11		*
12		* Jalview is distributed in the hope that it will be useful, but
13		* WITHOUT ANY WARRANTY; without even the implied warranty
14		* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15		* PURPOSE. See the GNU General Public License for more details.
16		*
17		* You should have received a copy of the GNU General Public License
18		* along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19		* The Jalview Authors are detailed in the 'AUTHORS' file.
20		*/
21		package jalview.viewmodel.seqfeatures;
22
23		import jalview.api.FeaturesDisplayedI;
24
25		import java.util.Collection;
26		import java.util.Collections;
27		import java.util.HashSet;
28		import java.util.Set;
29
		0% Uncovered Elements: 32 (32) Complexity: 13 Complexity Density: 0.68
30		public class FeaturesDisplayed implements FeaturesDisplayedI
31		{
32		private Set<String> featuresDisplayed = new HashSet<>();
33
34		private Set<String> featuresRegistered = new HashSet<>();
35
		0% Uncovered Elements: 4 (4) Complexity: 1 Complexity Density: 0.25
36	0	public FeaturesDisplayed(FeaturesDisplayedI featuresDisplayed2)...
37		{
38	0	Set<String> fdisp = featuresDisplayed2.getVisibleFeatures();
39	0	for (String ftype : fdisp)
40		{
41	0	featuresDisplayed.add(ftype);
42	0	featuresRegistered.add(ftype);
43		}
44		}
45
		- Uncovered Elements: 0 (0) Complexity: 1 Complexity Density: -
46	0	public FeaturesDisplayed()...
47		{
48		}
49
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
50	0	@Override...
51		public Set<String> getVisibleFeatures()
52		{
53	0	return Collections.unmodifiableSet(featuresDisplayed);
54		}
55
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
56	0	@Override...
57		public boolean isVisible(String featureType)
58		{
59	0	return featuresDisplayed.contains(featureType);
60		}
61
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
62	0	@Override...
63		public boolean areVisible(Collection<String> featureTypes)
64		{
65	0	return featuresDisplayed.containsAll(featureTypes);
66		}
67
		0% Uncovered Elements: 2 (2) Complexity: 1 Complexity Density: 0.5
68	0	@Override...
69		public void clear()
70		{
71	0	featuresDisplayed.clear();
72	0	featuresRegistered.clear();
73		}
74
		0% Uncovered Elements: 2 (2) Complexity: 1 Complexity Density: 0.5
75	0	@Override...
76		public void setAllVisible(Collection<String> makeVisible)
77		{
78	0	featuresDisplayed.addAll(makeVisible);
79	0	featuresRegistered.addAll(makeVisible);
80		}
81
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
82	0	@Override...
83		public void setAllRegisteredVisible()
84		{
85	0	featuresDisplayed.addAll(featuresRegistered);
86		}
87
		0% Uncovered Elements: 2 (2) Complexity: 1 Complexity Density: 0.5
88	0	@Override...
89		public void setVisible(String featureType)
90		{
91	0	featuresDisplayed.add(featureType);
92	0	featuresRegistered.add(featureType);
93		}
94
		0% Uncovered Elements: 2 (2) Complexity: 1 Complexity Density: 0.5
95	0	@Override...
96		public void setHidden(String featureType)
97		{
98	0	featuresDisplayed.remove(featureType);
99	0	featuresRegistered.add(featureType);
100		}
101
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
102	0	@Override...
103		public boolean isRegistered(String type)
104		{
105	0	return featuresRegistered.contains(type);
106		}
107
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
108	0	@Override...
109		public int getVisibleFeatureCount()
110		{
111	0	return featuresDisplayed.size();
112		}
113
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
114	0	@Override...
115		public int getRegisteredFeaturesCount()
116		{
117	0	return featuresRegistered.size();
118		}
119		}