Classes

Class	Line #	Total Statements	Complexity	TOTAL Coverage	Actions
StrandColourScheme	34	5	5	0.00%	Show methods

Class StrandColourScheme

Class StrandColourScheme	Line # 34	Total Statements 5	Complexity 5	TOTAL Coverage 0.00%
StrandColourScheme()   StrandColourScheme()	3939	1.01	1.01	0.0 0.00%
makeColour(float) : Color   makeColour(float) : Color	5353	1.01	1.01	0.0 0.00%
isPeptideSpecific() : boolean   isPeptideSpecific() : boolean	5959	1.01	1.01	0.0 0.00%
getSchemeName() : String   getSchemeName() : String	6565	1.01	1.01	0.0 0.00%
getInstance(AlignViewportI,AnnotatedCollectionI) : ColourSchemeI   getInstance(AlignViewportI,AnnotatedCollectionI) : ColourSchemeI	7575	1.01	1.01	0.0 0.00%

 

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1		/*
2		* Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3		* Copyright (C) $$Year-Rel$$ The Jalview Authors
4		*
5		* This file is part of Jalview.
6		*
7		* Jalview is free software: you can redistribute it and/or
8		* modify it under the terms of the GNU General Public License
9		* as published by the Free Software Foundation, either version 3
10		* of the License, or (at your option) any later version.
11		*
12		* Jalview is distributed in the hope that it will be useful, but
13		* WITHOUT ANY WARRANTY; without even the implied warranty
14		* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15		* PURPOSE. See the GNU General Public License for more details.
16		*
17		* You should have received a copy of the GNU General Public License
18		* along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19		* The Jalview Authors are detailed in the 'AUTHORS' file.
20		*/
21		package jalview.schemes;
22
23		import jalview.api.AlignViewportI;
24		import jalview.datamodel.AnnotatedCollectionI;
25
26		import java.awt.Color;
27
28		/**
29		* DOCUMENT ME!
30		*
31		* @author $author$
32		* @version $Revision$
33		*/
		0% Uncovered Elements: 10 (10) Complexity: 5 Complexity Density: 1
34		public class StrandColourScheme extends ScoreColourScheme
35		{
36		/**
37		* Creates a new StrandColourScheme object.
38		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
39	0	public StrandColourScheme()...
40		{
41	0	super(ResidueProperties.aaIndex, ResidueProperties.strand,
42		ResidueProperties.strandmin, ResidueProperties.strandmax);
43		}
44
45		/**
46		* DOCUMENT ME!
47		*
48		* @param c
49		* DOCUMENT ME!
50		*
51		* @return DOCUMENT ME!
52		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
53	0	@Override...
54		public Color makeColour(float c)
55		{
56	0	return new Color(c, c, (float) 1.0 - c);
57		}
58
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
59	0	@Override...
60		public boolean isPeptideSpecific()
61		{
62	0	return true;
63		}
64
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
65	0	@Override...
66		public String getSchemeName()
67		{
68	0	return JalviewColourScheme.Strand.toString();
69		}
70
71		/**
72		* Returns a new instance of this colour scheme with which the given data may
73		* be coloured
74		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
75	0	@Override...
76		public ColourSchemeI getInstance(AlignViewportI view,
77		AnnotatedCollectionI coll)
78		{
79	0	return new StrandColourScheme();
80		}
81		}