Classes

Class	Line #	Total Statements	Complexity	TOTAL Coverage	Actions
NucleotideAmbiguityColourScheme	26	4	4	0.00%	Show methods

Class NucleotideAmbiguityColourScheme

Class NucleotideAmbiguityColourScheme	Line # 26	Total Statements 4	Complexity 4	TOTAL Coverage 0.00%
NucleotideAmbiguityColourScheme()   NucleotideAmbiguityColourScheme()	3131	1.01	1.01	0.0 0.00%
isNucleotideSpecific() : boolean   isNucleotideSpecific() : boolean	3737	1.01	1.01	0.0 0.00%
getSchemeName() : String   getSchemeName() : String	4343	1.01	1.01	0.0 0.00%
getInstance(AlignViewportI,AnnotatedCollectionI) : ColourSchemeI   getInstance(AlignViewportI,AnnotatedCollectionI) : ColourSchemeI	5353	1.01	1.01	0.0 0.00%

 

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1		/*
2		* Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3		* Copyright (C) $$Year-Rel$$ The Jalview Authors
4		*
5		* This file is part of Jalview.
6		*
7		* Jalview is free software: you can redistribute it and/or
8		* modify it under the terms of the GNU General Public License
9		* as published by the Free Software Foundation, either version 3
10		* of the License, or (at your option) any later version.
11		*
12		* Jalview is distributed in the hope that it will be useful, but
13		* WITHOUT ANY WARRANTY; without even the implied warranty
14		* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15		* PURPOSE. See the GNU General Public License for more details.
16		*
17		* You should have received a copy of the GNU General Public License
18		* along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19		* The Jalview Authors are detailed in the 'AUTHORS' file.
20		*/
21		package jalview.schemes;
22
23		import jalview.api.AlignViewportI;
24		import jalview.datamodel.AnnotatedCollectionI;
25
		0% Uncovered Elements: 8 (8) Complexity: 4 Complexity Density: 1
26		public class NucleotideAmbiguityColourScheme extends ResidueColourScheme
27		{
28		/**
29		* Creates a new NucleotideColourScheme object.
30		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
31	0	public NucleotideAmbiguityColourScheme()...
32		{
33	0	super(ResidueProperties.nucleotideIndex,
34		ResidueProperties.nucleotideAmbiguity);
35		}
36
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
37	0	@Override...
38		public boolean isNucleotideSpecific()
39		{
40	0	return true;
41		}
42
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
43	0	@Override...
44		public String getSchemeName()
45		{
46	0	return JalviewColourScheme.NucleotideAmbiguity.toString();
47		}
48
49		/**
50		* Returns a new instance of this colour scheme with which the given data may
51		* be coloured
52		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
53	0	@Override...
54		public ColourSchemeI getInstance(AlignViewportI view,
55		AnnotatedCollectionI coll)
56		{
57	0	return new NucleotideAmbiguityColourScheme();
58		}
59
60		}