Classes

Class	Line #	Total Statements	Complexity	TOTAL Coverage	Actions
ScalePanelTest	46	114	5	0.00%	Show methods

Class ScalePanelTest

Class ScalePanelTest	Line # 46	Total Statements 114	Complexity 5	TOTAL Coverage 0.00%
setUpJvOptionPane() : void   setUpJvOptionPane() : void	4848	2.02	1.01	0.0 0.00%
testPreventNegativeStartColumn() : void   testPreventNegativeStartColumn() : void	5555	14.014	1.01	0.0 0.00%
testSelectColumns_withHidden() : void   testSelectColumns_withHidden() : void	9191	22.022	1.01	0.0 0.00%
testBuildPopupMenu() : void   testBuildPopupMenu() : void	128128	74.074	1.01	0.0 0.00%
setUpBeforeClass() : void   setUpBeforeClass() : void	254254	2.02	1.01	0.0 0.00%

 

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1		/*
2		* Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3		* Copyright (C) $$Year-Rel$$ The Jalview Authors
4		*
5		* This file is part of Jalview.
6		*
7		* Jalview is free software: you can redistribute it and/or
8		* modify it under the terms of the GNU General Public License
9		* as published by the Free Software Foundation, either version 3
10		* of the License, or (at your option) any later version.
11		*
12		* Jalview is distributed in the hope that it will be useful, but
13		* WITHOUT ANY WARRANTY; without even the implied warranty
14		* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15		* PURPOSE. See the GNU General Public License for more details.
16		*
17		* You should have received a copy of the GNU General Public License
18		* along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19		* The Jalview Authors are detailed in the 'AUTHORS' file.
20		*/
21		package jalview.gui;
22
23		import static org.testng.Assert.assertEquals;
24		import static org.testng.Assert.assertTrue;
25
26		import jalview.bin.Cache;
27		import jalview.bin.Jalview;
28		import jalview.datamodel.Alignment;
29		import jalview.datamodel.AlignmentI;
30		import jalview.datamodel.Sequence;
31		import jalview.datamodel.SequenceGroup;
32		import jalview.datamodel.SequenceI;
33		import jalview.io.DataSourceType;
34		import jalview.io.FileLoader;
35		import jalview.util.MessageManager;
36		import jalview.viewmodel.ViewportRanges;
37
38		import java.awt.event.MouseEvent;
39
40		import javax.swing.JMenuItem;
41		import javax.swing.JPopupMenu;
42
43		import org.testng.annotations.BeforeClass;
44		import org.testng.annotations.Test;
45
		0% Uncovered Elements: 119 (119) Complexity: 5 Complexity Density: 0.04
46		public class ScalePanelTest
47		{
		0% Uncovered Elements: 2 (2) Complexity: 1 Complexity Density: 0.5
48	0	@BeforeClass(alwaysRun = true)...
49		public void setUpJvOptionPane()
50		{
51	0	JvOptionPane.setInteractiveMode(false);
52	0	JvOptionPane.setMockResponse(JvOptionPane.CANCEL_OPTION);
53		}
54
		0% Uncovered Elements: 14 (14) Complexity: 1 Complexity Density: 0.07 4-
55	0	@Test(groups = "Functional")...
56		public void testPreventNegativeStartColumn()
57		{
58	0	SequenceI seq1 = new Sequence("Seq1", "MATRESS");
59	0	SequenceI seq2 = new Sequence("Seq2", "MADNESS");
60	0	AlignmentI al = new Alignment(new SequenceI[] { seq1, seq2 });
61
62	0	AlignFrame alignFrame = new AlignFrame(al, al.getWidth(),
63		al.getHeight());
64	0	ScalePanel scalePanel = alignFrame.alignPanel.getScalePanel();
65
66	0	MouseEvent mouse = new MouseEvent(scalePanel, 0, 1, 0, 4, 0, 1, false);
67
68		// check the bounded lookup is not returning negatives
69	0	assertEquals(
70		alignFrame.alignPanel.getSeqPanel().findAlignmentColumn(mouse),
71		0);
72
73	0	scalePanel.mousePressed(mouse);
74	0	scalePanel.mouseDragged(mouse);
75
76		// simulate dragging selection leftwards beyond the sequences giving
77		// negative X
78	0	mouse = new MouseEvent(scalePanel, 0, 1, 0, -30, 0, 1, false);
79
80	0	scalePanel.mouseReleased(mouse);
81
82	0	SequenceGroup sg = scalePanel.av.getSelectionGroup();
83	0	int startCol = sg.getStartRes();
84
85	0	assertTrue(startCol >= 0);
86		}
87
88		/**
89		* Test for JAL-3212
90		*/
		0% Uncovered Elements: 22 (22) Complexity: 1 Complexity Density: 0.05 4-
91	0	@Test(groups = "Functional")...
92		public void testSelectColumns_withHidden()
93		{
94	0	String seq1 = ">Seq1\nANTOFAGASTAVALPARAISOMONTEVIDEOANTANANARIVO";
95	0	AlignFrame alignFrame = new FileLoader().LoadFileWaitTillLoaded(seq1,
96		DataSourceType.PASTE);
97	0	ScalePanel scalePanel = alignFrame.alignPanel.getScalePanel();
98
99		/*
100		* hide columns 1-20 (of 43); then 'drag' to select columns 30-31;
101		* 31 is 51 in absolute columns but bug JAL-3212 reduces it to
102		* endRes which is 22
103		*/
104	0	AlignViewport viewport = alignFrame.getViewport();
105	0	ViewportRanges ranges = viewport.getRanges();
106	0	assertEquals(ranges.getStartRes(), 0);
107	0	assertEquals(ranges.getEndRes(), 42);
108	0	viewport.hideColumns(0, 19);
109	0	alignFrame.alignPanel.updateLayout();
110	0	assertEquals(ranges.getStartRes(), 0);
111	0	assertEquals(ranges.getEndRes(), 22);
112
113	0	int cw = viewport.getCharWidth();
114	0	int xPos = 9 * cw + 2;
115	0	MouseEvent mouse = new MouseEvent(scalePanel, 0, 1, 0, xPos, 0, 1,
116		false);
117	0	scalePanel.mousePressed(mouse);
118	0	scalePanel.mouseDragged(mouse);
119	0	xPos += cw;
120	0	mouse = new MouseEvent(scalePanel, 0, 1, 0, xPos, 0, 1, false);
121	0	scalePanel.mouseReleased(mouse);
122
123	0	SequenceGroup sg = scalePanel.av.getSelectionGroup();
124	0	assertEquals(sg.getStartRes(), 29);
125	0	assertEquals(sg.getEndRes(), 30);
126		}
127
		0% Uncovered Elements: 74 (74) Complexity: 1 Complexity Density: 0.01 4-
128	0	@Test(groups = "Functional")...
129		public void testBuildPopupMenu()
130		{
131	0	final String hide = MessageManager.getString("label.hide_columns");
132	0	final String reveal = MessageManager.getString("label.reveal");
133	0	final String revealAll = MessageManager.getString("action.reveal_all");
134
135	0	String seq1 = ">Seq1\nANTOFAGASTA";
136	0	AlignFrame alignFrame = new FileLoader().LoadFileWaitTillLoaded(seq1,
137		DataSourceType.PASTE);
138	0	ScalePanel scalePanel = alignFrame.alignPanel.getScalePanel();
139	0	AlignViewport viewport = alignFrame.getViewport();
140	0	int cw = viewport.getCharWidth();
141
142		/*
143		* hide columns 3-4 (counting from 0)
144		*/
145	0	viewport.hideColumns(3, 4);
146	0	alignFrame.alignPanel.updateLayout();
147
148		/*
149		* verify popup menu left/right of hidden column marker
150		* NB need to call mouseMoved first as this sets field 'reveal'
151		*/
152	0	int xPos = 1 * cw + 2; // 2 columns left of hidden marker
153	0	MouseEvent mouse = new MouseEvent(scalePanel, 0, 1, 0, xPos, 0, 1,
154		false);
155	0	scalePanel.mouseMoved(mouse);
156	0	JPopupMenu popup = scalePanel.buildPopupMenu(1);
157	0	assertEquals(popup.getSubElements().length, 0);
158
159		/*
160		* popup just left of hidden marker has 'Reveal'
161		*/
162	0	xPos = 2 * cw + 2;
163	0	mouse = new MouseEvent(scalePanel, 0, 1, 0, xPos, 0, 1, false);
164	0	scalePanel.mouseMoved(mouse);
165	0	popup = scalePanel.buildPopupMenu(2);
166	0	assertEquals(popup.getSubElements().length, 1);
167	0	assertEquals(((JMenuItem) popup.getSubElements()[0]).getText(), reveal);
168
169		/*
170		* popup just right of hidden marker has 'Reveal'
171		*/
172	0	xPos = 3 * cw + 2;
173	0	mouse = new MouseEvent(scalePanel, 0, 1, 0, xPos, 0, 1, false);
174	0	scalePanel.mouseMoved(mouse);
175	0	popup = scalePanel.buildPopupMenu(5); // allowing for 2 hidden columns
176	0	assertEquals(popup.getSubElements().length, 1);
177	0	assertEquals(((JMenuItem) popup.getSubElements()[0]).getText(), reveal);
178
179		/*
180		* popup further right is empty
181		*/
182	0	xPos = 4 * cw + 2;
183	0	mouse = new MouseEvent(scalePanel, 0, 1, 0, xPos, 0, 1, false);
184	0	scalePanel.mouseMoved(mouse);
185	0	popup = scalePanel.buildPopupMenu(6); // allowing for 2 hidden columns
186	0	assertEquals(popup.getSubElements().length, 0);
187
188		/*
189		* 'drag' to select columns around the hidden column marker
190		*/
191	0	xPos = 1 * cw + 2;
192	0	mouse = new MouseEvent(scalePanel, 0, 1, 0, xPos, 0, 1, false);
193	0	scalePanel.mousePressed(mouse);
194	0	scalePanel.mouseDragged(mouse);
195	0	xPos = 5 * cw + 2;
196	0	mouse = new MouseEvent(scalePanel, 0, 1, 0, xPos, 0, 1, false);
197	0	scalePanel.mouseReleased(mouse);
198
199		/*
200		* popup 2 columns left of marker: 'Hide' only
201		*/
202	0	xPos = 1 * cw + 2;
203	0	mouse = new MouseEvent(scalePanel, 0, 1, 0, xPos, 0, 1, false);
204	0	scalePanel.mouseMoved(mouse);
205	0	popup = scalePanel.buildPopupMenu(1);
206	0	assertEquals(popup.getSubElements().length, 1);
207	0	assertEquals(((JMenuItem) popup.getSubElements()[0]).getText(), hide);
208
209		/*
210		* popup just left of marker: 'Reveal' and 'Hide'
211		*/
212	0	xPos = 2 * cw + 2;
213	0	mouse = new MouseEvent(scalePanel, 0, 1, 0, xPos, 0, 1, false);
214	0	scalePanel.mouseMoved(mouse);
215	0	popup = scalePanel.buildPopupMenu(1);
216	0	assertEquals(popup.getSubElements().length, 2);
217	0	assertEquals(((JMenuItem) popup.getSubElements()[0]).getText(), reveal);
218	0	assertEquals(((JMenuItem) popup.getSubElements()[1]).getText(), hide);
219
220		/*
221		* popup just right of marker: 'Reveal' and 'Hide'
222		*/
223	0	xPos = 3 * cw + 2;
224	0	mouse = new MouseEvent(scalePanel, 0, 1, 0, xPos, 0, 1, false);
225	0	scalePanel.mouseMoved(mouse);
226	0	popup = scalePanel.buildPopupMenu(5);
227	0	assertEquals(popup.getSubElements().length, 2);
228	0	assertEquals(((JMenuItem) popup.getSubElements()[0]).getText(), reveal);
229	0	assertEquals(((JMenuItem) popup.getSubElements()[1]).getText(), hide);
230
231		/*
232		* hiding a second region adds option 'Reveal all' to 'Reveal'
233		*/
234	0	viewport.hideColumns(6, 7);
235	0	alignFrame.alignPanel.updateLayout();
236	0	xPos = 3 * cw + 2;
237	0	mouse = new MouseEvent(scalePanel, 0, 1, 0, xPos, 0, 1, false);
238	0	scalePanel.mouseMoved(mouse);
239	0	popup = scalePanel.buildPopupMenu(5);
240	0	assertEquals(popup.getSubElements().length, 3);
241	0	assertEquals(((JMenuItem) popup.getSubElements()[0]).getText(), reveal);
242	0	assertEquals(((JMenuItem) popup.getSubElements()[1]).getText(),
243		revealAll);
244	0	assertEquals(((JMenuItem) popup.getSubElements()[2]).getText(), hide);
245
246	0	alignFrame.deselectAllSequenceMenuItem_actionPerformed(null);
247	0	popup = scalePanel.buildPopupMenu(5);
248	0	assertEquals(popup.getSubElements().length, 2);
249	0	assertEquals(((JMenuItem) popup.getSubElements()[0]).getText(), reveal);
250	0	assertEquals(((JMenuItem) popup.getSubElements()[1]).getText(),
251		revealAll);
252		}
253
		0% Uncovered Elements: 2 (2) Complexity: 1 Complexity Density: 0.5
254	0	@BeforeClass(alwaysRun = true)...
255		public static void setUpBeforeClass() throws Exception
256		{
257		/*
258		* use read-only test properties file
259		*/
260	0	Cache.loadProperties("test/jalview/io/testProps.jvprops");
261	0	Jalview.main(new String[] { "--nonews" });
262		}
263
264		}