Classes

Class	Line #	Total Statements	Complexity	TOTAL Coverage	Actions
Profiles	23	6	9	0.00%	Show methods

Class Profiles

Class Profiles	Line # 23	Total Statements 6	Complexity 9	TOTAL Coverage 0.00%
Profiles(int,ProfileI[])   Profiles(int,ProfileI[])	2929	2.02	1.01	0.0 0.00%
get(int) : ProfileI   get(int) : ProfileI	4040	1.01	4.04	0.0 0.00%
getStartColumn() : int   getStartColumn() : int	5151	1.01	1.01	0.0 0.00%
getEndColumn() : int   getEndColumn() : int	6060	1.01	2.02	0.0 0.00%
getCount() : int   getCount() : int	6666	1.01	1.01	0.0 0.00%

 

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1		/*
2		* Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3		* Copyright (C) $$Year-Rel$$ The Jalview Authors
4		*
5		* This file is part of Jalview.
6		*
7		* Jalview is free software: you can redistribute it and/or
8		* modify it under the terms of the GNU General Public License
9		* as published by the Free Software Foundation, either version 3
10		* of the License, or (at your option) any later version.
11		*
12		* Jalview is distributed in the hope that it will be useful, but
13		* WITHOUT ANY WARRANTY; without even the implied warranty
14		* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15		* PURPOSE. See the GNU General Public License for more details.
16		*
17		* You should have received a copy of the GNU General Public License
18		* along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19		* The Jalview Authors are detailed in the 'AUTHORS' file.
20		*/
21		package jalview.datamodel;
22
		0% Uncovered Elements: 15 (15) Complexity: 9 Complexity Density: 1.5
23		public class Profiles implements ProfilesI
24		{
25		int sourceCount;
26
27		private ProfileI[] profiles;
28
		0% Uncovered Elements: 2 (2) Complexity: 1 Complexity Density: 0.5
29	0	public Profiles(int sourceCount, ProfileI[] p)...
30		{
31	0	this.sourceCount=sourceCount;
32	0	profiles = p;
33		}
34
35		/**
36		* Returns the profile for the given column, or null if none found
37		*
38		* @param col
39		*/
		0% Uncovered Elements: 3 (3) Complexity: 4 Complexity Density: 4
40	0	@Override...
41		public ProfileI get(int col)
42		{
43	0	return profiles != null && col >= 0 && col < profiles.length
44		? profiles[col]
45		: null;
46		}
47
48		/**
49		* Returns the first column (base 0) covered by the profiles
50		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
51	0	@Override...
52		public int getStartColumn()
53		{
54	0	return 0;
55		}
56
57		/**
58		* Returns the last column (base 0) covered by the profiles
59		*/
		0% Uncovered Elements: 3 (3) Complexity: 2 Complexity Density: 2
60	0	@Override...
61		public int getEndColumn()
62		{
63	0	return profiles == null ? 0 : profiles.length - 1;
64		}
65
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
66	0	@Override...
67		public int getCount()
68		{
69	0	return sourceCount;
70		}
71		}