Classes

Class	Line #	Total Statements	Complexity	TOTAL Coverage	Actions
ArgValue	29	42	22	0.00%	Show methods

Class ArgValue

Class ArgValue	Line # 29	Total Statements 42	Complexity 22	TOTAL Coverage 0.00%
ArgValue(Arg,SubVals,Type,String,int,boolean,String,String)   ArgValue(Arg,SubVals,Type,String,int,boolean,String,String)	5656	8.08	2.02	0.0 0.00%
ArgValue(Arg,Type,String,int,boolean,String,String)   ArgValue(Arg,Type,String,int,boolean,String,String)	7070	8.08	1.01	0.0 0.00%
setType(Type) : void   setType(Type) : void	8484	2.02	2.02	0.0 0.00%
getType() : Type   getType() : Type	9090	1.01	1.01	0.0 0.00%
getArg() : Arg   getArg() : Arg	9595	1.01	1.01	0.0 0.00%
getValue() : String   getValue() : String	100100	1.01	1.01	0.0 0.00%
getArgIndex() : int   getArgIndex() : int	105105	1.01	1.01	0.0 0.00%
setId(String) : void   setId(String) : void	110110	1.01	1.01	0.0 0.00%
getId() : String   getId() : String	115115	1.01	1.01	0.0 0.00%
getSubVals() : SubVals   getSubVals() : SubVals	120120	1.01	1.01	0.0 0.00%
getSubVal(String) : String   getSubVal(String) : String	125125	3.03	3.03	0.0 0.00%
putSubVal(String,String) : void   putSubVal(String,String) : void	132132	1.01	1.01	0.0 0.00%
compareTo(ArgValue) : int   compareTo(ArgValue) : int	137137	1.01	1.01	0.0 0.00%
toString() : String   toString() : String	143143	9.09	2.02	0.0 0.00%
getGivenLinkedId() : String   getGivenLinkedId() : String	160160	1.01	1.01	0.0 0.00%
getAssignedLinkedId() : String   getAssignedLinkedId() : String	165165	1.01	1.01	0.0 0.00%
setByWildcardLinkedId() : boolean   setByWildcardLinkedId() : boolean	170170	1.01	1.01	0.0 0.00%

 

Contributing tests

Source view

1		/*
2		* Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3		* Copyright (C) $$Year-Rel$$ The Jalview Authors
4		*
5		* This file is part of Jalview.
6		*
7		* Jalview is free software: you can redistribute it and/or
8		* modify it under the terms of the GNU General Public License
9		* as published by the Free Software Foundation, either version 3
10		* of the License, or (at your option) any later version.
11		*
12		* Jalview is distributed in the hope that it will be useful, but
13		* WITHOUT ANY WARRANTY; without even the implied warranty
14		* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15		* PURPOSE. See the GNU General Public License for more details.
16		*
17		* You should have received a copy of the GNU General Public License
18		* along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19		* The Jalview Authors are detailed in the 'AUTHORS' file.
20		*/
21		package jalview.bin.argparser;
22
23		import jalview.bin.argparser.Arg.Opt;
24		import jalview.bin.argparser.Arg.Type;
25
26		/**
27		* A helper class to keep an index of argument position with argument values
28		*/
		0% Uncovered Elements: 67 (67) Complexity: 22 Complexity Density: 0.52
29		public class ArgValue implements Comparable<ArgValue>
30		{
31		private Arg arg;
32
33		private int argIndex;
34
35		private String value;
36
37		private String givenLinkedId = null;
38
39		private String assignedLinkedId = null;
40
41		private boolean setByWildcardLinkedId = false;
42
43		/*
44		* Type type is only really used by --help-type
45		*/
46		private Type type = null;
47
48		/*
49		* This id is set by a subVal id= to identify the product of this ArgValue
50		* later. Set but not currently used.
51		*/
52		private String id;
53
54		private SubVals subVals;
55
		0% Uncovered Elements: 10 (10) Complexity: 2 Complexity Density: 0.25
56	0	protected ArgValue(Arg a, SubVals sv, Type type, String content,...
57		int argIndex, boolean setByWildcardLinkedId, String givenLinkedId,
58		String assignedLinkedId)
59		{
60	0	this.arg = a;
61	0	this.value = content;
62	0	this.argIndex = argIndex;
63	0	this.subVals = sv == null ? new SubVals("") : sv;
64	0	this.setType(type);
65	0	this.setByWildcardLinkedId = setByWildcardLinkedId;
66	0	this.givenLinkedId = givenLinkedId;
67	0	this.assignedLinkedId = assignedLinkedId;
68		}
69
		0% Uncovered Elements: 8 (8) Complexity: 1 Complexity Density: 0.12
70	0	protected ArgValue(Arg a, Type type, String value, int argIndex,...
71		boolean setByWildcardLinkedId, String givenLinkedId,
72		String assignedLinkedId)
73		{
74	0	this.arg = a;
75	0	this.argIndex = argIndex;
76	0	this.subVals = new SubVals(value);
77	0	this.value = getSubVals().getContent();
78	0	this.setType(type);
79	0	this.setByWildcardLinkedId = setByWildcardLinkedId;
80	0	this.givenLinkedId = givenLinkedId;
81	0	this.assignedLinkedId = assignedLinkedId;
82		}
83
		0% Uncovered Elements: 4 (4) Complexity: 2 Complexity Density: 1
84	0	protected void setType(Type t)...
85		{
86	0	if (this.getArg().hasOption(Opt.HASTYPE))
87	0	this.type = t;
88		}
89
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
90	0	public Type getType()...
91		{
92	0	return type;
93		}
94
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
95	0	public Arg getArg()...
96		{
97	0	return arg;
98		}
99
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
100	0	public String getValue()...
101		{
102	0	return value;
103		}
104
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
105	0	public int getArgIndex()...
106		{
107	0	return argIndex;
108		}
109
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
110	0	protected void setId(String i)...
111		{
112	0	id = i;
113		}
114
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
115	0	public String getId()...
116		{
117	0	return id;
118		}
119
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
120	0	public SubVals getSubVals()...
121		{
122	0	return subVals;
123		}
124
		0% Uncovered Elements: 5 (5) Complexity: 3 Complexity Density: 1
125	0	public String getSubVal(String key)...
126		{
127	0	if (subVals == null || !subVals.has(key))
128	0	return null;
129	0	return subVals.get(key);
130		}
131
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
132	0	protected void putSubVal(String key, String val)...
133		{
134	0	this.subVals.put(key, val);
135		}
136
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
137	0	@Override...
138		public final int compareTo(ArgValue o)
139		{
140	0	return this.getArgIndex() - o.getArgIndex();
141		}
142
		0% Uncovered Elements: 11 (11) Complexity: 2 Complexity Density: 0.22
143	0	@Override...
144		public String toString()
145		{
146	0	StringBuilder sb = new StringBuilder();
147	0	sb.append(this.getArg().argString());
148	0	sb.append("=");
149	0	if (!this.getSubVals().getSubValMap().isEmpty())
150		{
151	0	sb.append(this.getSubVals().toString());
152		}
153	0	sb.append("'");
154	0	sb.append(this.getValue());
155	0	sb.append("'");
156
157	0	return sb.toString();
158		}
159
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
160	0	public String getGivenLinkedId()...
161		{
162	0	return this.givenLinkedId;
163		}
164
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
165	0	public String getAssignedLinkedId()...
166		{
167	0	return this.assignedLinkedId;
168		}
169
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
170	0	public boolean setByWildcardLinkedId()...
171		{
172		// looking for deliberately user set wildcard
173	0	return this.setByWildcardLinkedId && this.getGivenLinkedId() != null;
174		}
175		}