Build: #2 failed
Job: Clover and Tests failed
Build log
The build generated 189 lines of output. Download or view full build log
| 09-Feb-2026 18:11:24 | Build Jalview Builds - Gradle Develop Build - epic-JAL-4320_gradle_upgrade_to_gradle9 - Clover and Tests #2 (JB-GDB745-JOB1-2) started building on agent Default Agent |
| 09-Feb-2026 18:11:24 | |
| 09-Feb-2026 18:11:24 | Build working directory is /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB745-JOB1 |
| 09-Feb-2026 18:11:24 | Executing build Jalview Builds - Gradle Develop Build - epic-JAL-4320_gradle_upgrade_to_gradle9 - Clover and Tests #2 (JB-GDB745-JOB1-2) |
| 09-Feb-2026 18:11:24 | Starting task 'Checkout Default Repository' of type 'com.atlassian.bamboo.plugins.vcs:task.vcs.checkout' |
| 09-Feb-2026 18:11:24 | Checking out into /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB745-JOB1 |
| 09-Feb-2026 18:11:24 | Updating source code to revision: 4c2cf2e063ab5bcd54135b224f304f6aa944a4a0 |
| 09-Feb-2026 18:11:24 | Fetching 'refs/heads/epic/JAL-4320_gradle_upgrade_to_gradle9' from 'https://gitlab.jalview.org/jalview/jalview.git'. |
| 09-Feb-2026 18:11:24 | Checking out revision 4c2cf2e063ab5bcd54135b224f304f6aa944a4a0. |
| 09-Feb-2026 18:11:24 | From file:///srv/bamboo/bamboo-home/xml-data/build-dir/_git-repositories-cache/62ce6c67e11163a982952b2962d6d7b0872110f0 |
| 09-Feb-2026 18:11:24 | 65ba1d2..4c2cf2e epic/JAL-4320_gradle_upgrade_to_gradle9 -> origin/epic/JAL-4320_gradle_upgrade_to_gradle9 |
| 09-Feb-2026 18:11:24 | 205fb76..dbbef33 bug/JAL-4624_JAL-4623_Mul_SS_in_PCA -> origin/bug/JAL-4624_JAL-4623_Mul_SS_in_PCA |
| 09-Feb-2026 18:11:25 | Already on 'epic/JAL-4320_gradle_upgrade_to_gradle9' |
| 09-Feb-2026 18:11:25 | Your branch is behind 'origin/epic/JAL-4320_gradle_upgrade_to_gradle9' by 1 commit, and can be fast-forwarded. |
| 09-Feb-2026 18:11:25 | (use "git pull" to update your local branch) |
| 09-Feb-2026 18:11:25 | HEAD is now at 4c2cf2e JAL-4320 Removed all gradle 9 and 10 deprecation warnings for compileJava, shadowJar, installers, jalviewjs tasks |
| 09-Feb-2026 18:11:25 | Updated source code to revision: 4c2cf2e063ab5bcd54135b224f304f6aa944a4a0 |
| 09-Feb-2026 18:11:25 | Finished task 'Checkout Default Repository' with result: Success |
| 09-Feb-2026 18:11:25 | Running pre-build action: VCS Version Collector |
| 09-Feb-2026 18:11:25 | Running pre-build action: Artifactory Release Staging |
| 09-Feb-2026 18:11:25 | Starting task 'Run tests with openclover under gradle' of type 'org.jfrog.bamboo.bamboo-artifactory-plugin:artifactoryGradleTask' |
| 09-Feb-2026 18:11:25 | Bamboo Artifactory Plugin version: 2.6.2 |
| 09-Feb-2026 18:11:25 | Beginning to execute external process for build 'Jalview Builds - Gradle Develop Build - epic-JAL-4320_gradle_upgrade_to_gradle9 - Clover and Tests #2 (JB-GDB745-JOB1-2)' ... running command line: /home/bamboo/buildtools/x11-gradle/bin/gradle -Pclover=true -PJAVA_VERSION=11 -Ptestng_excluded_groups=Not-bamboo clean cleanTest test ... in: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB745-JOB1 ... using extra environment variables: bamboo_planRepository_1_branch=epic/JAL-4320_gradle_upgrade_to_gradle9 bamboo_capability_system_builder_maven_Artifactory_Maven_3=/usr CATALINA_PID=/home/bamboo/latest/work/bamboo.pid bamboo_planRepository_1_branchDisplayName=epic/JAL-4320_gradle_upgrade_to_gradle9 bamboo_repository_revision_number=4c2cf2e063ab5bcd54135b224f304f6aa944a4a0 bamboo_repository_48169021_branch_name=epic/JAL-4320_gradle_upgrade_to_gradle9 bamboo_resultsUrl=https://builds.jalview.org/browse/JB-GDB745-JOB1-2 JAVA_OPTS=-Xms512m -Xmx1024m -Dbamboo.home=/srv/bamboo/bamboo-home -Djdk.tls.ephemeralDHKeySize=2048 bamboo_build_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB745-JOB1 bamboo_planRepository_1_name=Jalview Gitlab bamboo_buildKey=JB-GDB745-JOB1 bamboo_repository_48169021_previous_revision_number=65ba1d2d9353a41a5b08245ece52660dc3a08801 bamboo_shortPlanName=epic-JAL-4320_gradle_upgrade_to_gradle9 bamboo_planRepository_name=Jalview Gitlab LOGNAME=bamboo bamboo_buildNumber=2 PWD=/ bamboo_capability_system_builder_command_Eclipse_2019_09=/home/bamboo/buildtools/eclipse/jee-2019-09/eclipse/eclipse bamboo_shortJobName=Clover and Tests bamboo_buildResultsUrl=https://builds.jalview.org/browse/JB-GDB745-JOB1-2 bamboo_planRepository_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git SHELL=/bin/bash bamboo_agentId=196609 bamboo_planName=Jalview Builds - Gradle Develop Build - epic-JAL-4320_gradle_upgrade_to_gradle9 bamboo_shortPlanKey=GDB745 bamboo_repository_48169021_revision_number=4c2cf2e063ab5bcd54135b224f304f6aa944a4a0 bamboo_shortJobKey=JOB1 bamboo_capability_system_jdk_OpenJDK_11=/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk bamboo_planRepository_revision=4c2cf2e063ab5bcd54135b224f304f6aa944a4a0 bamboo_buildTimeStamp=2026-02-09T18:11:24.474Z bamboo_repository_previous_revision_number=65ba1d2d9353a41a5b08245ece52660dc3a08801 bamboo_planRepository_previousRevision=65ba1d2d9353a41a5b08245ece52660dc3a08801 bamboo_repository_git_branch=epic/JAL-4320_gradle_upgrade_to_gradle9 bamboo_buildResultKey=JB-GDB745-JOB1-2 bamboo_repository_branch_name=epic/JAL-4320_gradle_upgrade_to_gradle9 bamboo_buildPlanName=Jalview Builds - Gradle Develop Build - epic-JAL-4320_gradle_upgrade_to_gradle9 - Clover and Tests bamboo_capability_system_builder_ant_j11_Ant=/home/bamboo/buildtools/j11/ant-j11 bamboo_repository_48169021_name=Jalview Gitlab bamboo_planRepository_1_revision=4c2cf2e063ab5bcd54135b224f304f6aa944a4a0 SHLVL=1 bamboo_capability_system_builder_ant_x11_Ant=/home/bamboo/buildtools/x11-ant bamboo_repository_name=Jalview Gitlab bamboo_repository_48169021_git_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git JAVA_HOME=/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/ LANG=en_GB.UTF-8 bamboo_buildFailed=false bamboo_capability_system_jdk_OpenJDK_8=/home/bamboo/buildtools/jdk/jdk-8-linux-x64/jdk bamboo_planRepository_branch=epic/JAL-4320_gradle_upgrade_to_gradle9 bamboo_repository_48169021_git_username= bamboo_agentWorkingDirectory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609 bamboo_capability_system_git_executable=/bin/git bamboo_repository_git_username= bamboo_planRepository_1_previousRevision=65ba1d2d9353a41a5b08245ece52660dc3a08801 bamboo_planRepository_branchDisplayName=epic/JAL-4320_gradle_upgrade_to_gradle9 bamboo_planRepository_1_type=gitv2 bamboo_planRepository_branchName=epic/JAL-4320_gradle_upgrade_to_gradle9 _=/usr/bin/java bamboo_capability_system_builder_ant_j11_x11_Ant=/home/bamboo/buildtools/j11/x11-ant-j11 bamboo_capability_system_builderivy_Ivy=/usr bamboo_plan_storageTag=plan-47972473 bamboo_capability_system_builder_gradle_Gradle=/home/bamboo/buildtools/gradle bamboo_hg_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_hg-repositories-cache bamboo_repository_48169021_git_branch=epic/JAL-4320_gradle_upgrade_to_gradle9 bamboo_planRepository_1_username= bamboo_planRepository_type=gitv2 USER=bamboo bamboo_git_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_git-repositories-cache bamboo_repository_git_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git bamboo_capability_system_builder_ant_Ant=/usr/share/ant bamboo_capability_system_builder_mvn3_Maven_3=/usr/share/maven bamboo_tmp_directory=/srv/bamboo/bamboo-home/temp bamboo_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB745-JOB1 bamboo_planKey=JB-GDB745 bamboo_planRepository_1_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git bamboo_planRepository_username= HOME=/home/bamboo bamboo_planRepository_1_branchName=epic/JAL-4320_gradle_upgrade_to_gradle9 PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin |
| 09-Feb-2026 18:11:25 | 2414 |
| 09-Feb-2026 18:11:26 | Starting a Gradle Daemon (subsequent builds will be faster) |
| 09-Feb-2026 18:11:41 | |
| 09-Feb-2026 18:11:41 | FAILURE: Build failed with an exception. |
| 09-Feb-2026 18:11:41 | |
| 09-Feb-2026 18:11:41 | * What went wrong: |
| 09-Feb-2026 18:11:41 | A problem occurred configuring root project 'jalview'. |
| 09-Feb-2026 18:11:41 | > Could not resolve all files for configuration ':classpath'. |
| 09-Feb-2026 18:11:41 | > Could not resolve com.diffplug.spotless:spotless-plugin-gradle:8.2.0. |
| 09-Feb-2026 18:11:41 | Required by: |
| 09-Feb-2026 18:11:41 | project : > com.diffplug.spotless:com.diffplug.spotless.gradle.plugin:8.2.0 |
| 09-Feb-2026 18:11:41 | > No matching variant of com.diffplug.spotless:spotless-plugin-gradle:8.2.0 was found. The consumer was configured to find a runtime of a library compatible with Java 11, packaged as a jar, and its dependencies declared externally, as well as attribute 'org.gradle.plugin.api-version' with value '7.4.2' but: |
| 09-Feb-2026 18:11:41 | - Variant 'apiElements' capability com.diffplug.spotless:spotless-plugin-gradle:8.2.0 declares a library, packaged as a jar, and its dependencies declared externally: |
| 09-Feb-2026 18:11:41 | - Incompatible because this component declares an API of a component compatible with Java 17 and the consumer needed a runtime of a component compatible with Java 11 |
| 09-Feb-2026 18:11:41 | - Other compatible attribute: |
| 09-Feb-2026 18:11:41 | - Doesn't say anything about org.gradle.plugin.api-version (required '7.4.2') |
| 09-Feb-2026 18:11:41 | - Variant 'javadocElements' capability com.diffplug.spotless:spotless-plugin-gradle:8.2.0 declares a runtime of a component, and its dependencies declared externally: |
| 09-Feb-2026 18:11:41 | - Incompatible because this component declares documentation and the consumer needed a library |
| 09-Feb-2026 18:11:41 | - Other compatible attributes: |
| 09-Feb-2026 18:11:41 | - Doesn't say anything about its target Java version (required compatibility with Java 11) |
| 09-Feb-2026 18:11:41 | - Doesn't say anything about its elements (required them packaged as a jar) |
| 09-Feb-2026 18:11:41 | - Doesn't say anything about org.gradle.plugin.api-version (required '7.4.2') |
| 09-Feb-2026 18:11:41 | - Variant 'runtimeElements' capability com.diffplug.spotless:spotless-plugin-gradle:8.2.0 declares a runtime of a library, packaged as a jar, and its dependencies declared externally: |
| 09-Feb-2026 18:11:41 | - Incompatible because this component declares a component compatible with Java 17 and the consumer needed a component compatible with Java 11 |
| 09-Feb-2026 18:11:41 | - Other compatible attribute: |
| 09-Feb-2026 18:11:41 | - Doesn't say anything about org.gradle.plugin.api-version (required '7.4.2') |
| 09-Feb-2026 18:11:41 | - Variant 'sourcesElements' capability com.diffplug.spotless:spotless-plugin-gradle:8.2.0 declares a runtime of a component, and its dependencies declared externally: |
| 09-Feb-2026 18:11:41 | - Incompatible because this component declares documentation and the consumer needed a library |
| 09-Feb-2026 18:11:41 | - Other compatible attributes: |
| 09-Feb-2026 18:11:41 | - Doesn't say anything about its target Java version (required compatibility with Java 11) |
| 09-Feb-2026 18:11:41 | - Doesn't say anything about its elements (required them packaged as a jar) |
| 09-Feb-2026 18:11:41 | - Doesn't say anything about org.gradle.plugin.api-version (required '7.4.2') |
| 09-Feb-2026 18:11:41 | > Could not resolve com.gradleup.shadow:shadow-gradle-plugin:9.3.1. |
| 09-Feb-2026 18:11:41 | Required by: |
| 09-Feb-2026 18:11:41 | project : > com.gradleup.shadow:com.gradleup.shadow.gradle.plugin:9.3.1 |
| 09-Feb-2026 18:11:41 | > No matching variant of com.gradleup.shadow:shadow-gradle-plugin:9.3.1 was found. The consumer was configured to find a runtime of a library compatible with Java 11, packaged as a jar, and its dependencies declared externally, as well as attribute 'org.gradle.plugin.api-version' with value '7.4.2' but: |
| 09-Feb-2026 18:11:41 | - Variant 'apiElements' capabilities com.github.jengelman.gradle.plugins:shadow:9.3.1 and com.github.johnrengelman:shadow:9.3.1 and com.gradleup.shadow:shadow-gradle-plugin:9.3.1 and gradle.plugin.com.github.jengelman.gradle.plugins:shadow:9.3.1 and gradle.plugin.com.github.johnrengelman:shadow:9.3.1 and io.github.goooler.shadow:shadow-gradle-plugin:9.3.1 declares a library, packaged as a jar, and its dependencies declared externally: |
| 09-Feb-2026 18:11:41 | - Incompatible because this component declares an API of a component compatible with Java 17, as well as attribute 'org.gradle.plugin.api-version' with value '9.0.0' and the consumer needed a runtime of a component compatible with Java 11, as well as attribute 'org.gradle.plugin.api-version' with value '7.4.2' |
| 09-Feb-2026 18:11:41 | - Variant 'javadocElements' capabilities com.github.jengelman.gradle.plugins:shadow:9.3.1 and com.github.johnrengelman:shadow:9.3.1 and com.gradleup.shadow:shadow-gradle-plugin:9.3.1 and gradle.plugin.com.github.jengelman.gradle.plugins:shadow:9.3.1 and gradle.plugin.com.github.johnrengelman:shadow:9.3.1 and io.github.goooler.shadow:shadow-gradle-plugin:9.3.1 declares a runtime of a component, and its dependencies declared externally: |
| 09-Feb-2026 18:11:41 | - Incompatible because this component declares documentation and the consumer needed a library |
| 09-Feb-2026 18:11:41 | - Other compatible attributes: |
| 09-Feb-2026 18:11:41 | - Doesn't say anything about its target Java version (required compatibility with Java 11) |
| 09-Feb-2026 18:11:41 | - Doesn't say anything about its elements (required them packaged as a jar) |
| 09-Feb-2026 18:11:41 | - Doesn't say anything about org.gradle.plugin.api-version (required '7.4.2') |
| 09-Feb-2026 18:11:41 | - Variant 'runtimeElements' capabilities com.github.jengelman.gradle.plugins:shadow:9.3.1 and com.github.johnrengelman:shadow:9.3.1 and com.gradleup.shadow:shadow-gradle-plugin:9.3.1 and gradle.plugin.com.github.jengelman.gradle.plugins:shadow:9.3.1 and gradle.plugin.com.github.johnrengelman:shadow:9.3.1 and io.github.goooler.shadow:shadow-gradle-plugin:9.3.1 declares a runtime of a library, packaged as a jar, and its dependencies declared externally: |
| 09-Feb-2026 18:11:41 | - Incompatible because this component declares a component compatible with Java 17 and the consumer needed a component compatible with Java 11 |
| 09-Feb-2026 18:11:41 | - Other compatible attribute: |
| 09-Feb-2026 18:11:41 | - Doesn't say anything about org.gradle.plugin.api-version (required '7.4.2') |
| 09-Feb-2026 18:11:41 | - Variant 'sourcesElements' capabilities com.github.jengelman.gradle.plugins:shadow:9.3.1 and com.github.johnrengelman:shadow:9.3.1 and com.gradleup.shadow:shadow-gradle-plugin:9.3.1 and gradle.plugin.com.github.jengelman.gradle.plugins:shadow:9.3.1 and gradle.plugin.com.github.johnrengelman:shadow:9.3.1 and io.github.goooler.shadow:shadow-gradle-plugin:9.3.1 declares a runtime of a component, and its dependencies declared externally: |
| 09-Feb-2026 18:11:41 | - Incompatible because this component declares documentation and the consumer needed a library |
| 09-Feb-2026 18:11:41 | - Other compatible attributes: |
| 09-Feb-2026 18:11:41 | - Doesn't say anything about its target Java version (required compatibility with Java 11) |
| 09-Feb-2026 18:11:41 | - Doesn't say anything about its elements (required them packaged as a jar) |
| 09-Feb-2026 18:11:41 | - Doesn't say anything about org.gradle.plugin.api-version (required '7.4.2') |
| 09-Feb-2026 18:11:41 | |
| 09-Feb-2026 18:11:41 | * Try: |
| 09-Feb-2026 18:11:41 | > Run with --stacktrace option to get the stack trace. |
| 09-Feb-2026 18:11:41 | > Run with --info or --debug option to get more log output. |
| 09-Feb-2026 18:11:41 | > Run with --scan to get full insights. |
| 09-Feb-2026 18:11:41 | |
| 09-Feb-2026 18:11:41 | * Get more help at https://help.gradle.org |
| 09-Feb-2026 18:11:41 | |
| 09-Feb-2026 18:11:41 | BUILD FAILED in 15s |
| 09-Feb-2026 18:11:41 | |
| 09-Feb-2026 18:11:41 | Failing task since return code of [/home/bamboo/buildtools/x11-gradle/bin/gradle -Pclover=true -PJAVA_VERSION=11 -Ptestng_excluded_groups=Not-bamboo clean cleanTest test] was 1 while expected 0 |
| 09-Feb-2026 18:11:41 | Finished task 'Run tests with openclover under gradle' with result: Failed |
| 09-Feb-2026 18:11:41 | Starting task 'Clover Report' of type 'org.jfrog.bamboo.bamboo-artifactory-plugin:artifactoryGradleTask' |
| 09-Feb-2026 18:11:41 | Bamboo Artifactory Plugin version: 2.6.2 |
| 09-Feb-2026 18:11:41 | Beginning to execute external process for build 'Jalview Builds - Gradle Develop Build - epic-JAL-4320_gradle_upgrade_to_gradle9 - Clover and Tests #2 (JB-GDB745-JOB1-2)' ... running command line: /home/bamboo/buildtools/x11-gradle/bin/gradle --no-daemon -Pclover=true -PJAVA_VERSION=11 cloverReport ... in: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB745-JOB1 ... using extra environment variables: bamboo_planRepository_1_branch=epic/JAL-4320_gradle_upgrade_to_gradle9 bamboo_capability_system_builder_maven_Artifactory_Maven_3=/usr CATALINA_PID=/home/bamboo/latest/work/bamboo.pid bamboo_planRepository_1_branchDisplayName=epic/JAL-4320_gradle_upgrade_to_gradle9 bamboo_repository_revision_number=4c2cf2e063ab5bcd54135b224f304f6aa944a4a0 bamboo_repository_48169021_branch_name=epic/JAL-4320_gradle_upgrade_to_gradle9 bamboo_resultsUrl=https://builds.jalview.org/browse/JB-GDB745-JOB1-2 JAVA_OPTS=-Xms512m -Xmx1024m -Dbamboo.home=/srv/bamboo/bamboo-home -Djdk.tls.ephemeralDHKeySize=2048 bamboo_build_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB745-JOB1 bamboo_planRepository_1_name=Jalview Gitlab bamboo_buildKey=JB-GDB745-JOB1 bamboo_repository_48169021_previous_revision_number=65ba1d2d9353a41a5b08245ece52660dc3a08801 bamboo_shortPlanName=epic-JAL-4320_gradle_upgrade_to_gradle9 bamboo_planRepository_name=Jalview Gitlab LOGNAME=bamboo bamboo_buildNumber=2 PWD=/ bamboo_capability_system_builder_command_Eclipse_2019_09=/home/bamboo/buildtools/eclipse/jee-2019-09/eclipse/eclipse bamboo_shortJobName=Clover and Tests bamboo_buildResultsUrl=https://builds.jalview.org/browse/JB-GDB745-JOB1-2 bamboo_planRepository_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git SHELL=/bin/bash bamboo_agentId=196609 bamboo_planName=Jalview Builds - Gradle Develop Build - epic-JAL-4320_gradle_upgrade_to_gradle9 bamboo_shortPlanKey=GDB745 bamboo_repository_48169021_revision_number=4c2cf2e063ab5bcd54135b224f304f6aa944a4a0 bamboo_shortJobKey=JOB1 bamboo_capability_system_jdk_OpenJDK_11=/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk bamboo_planRepository_revision=4c2cf2e063ab5bcd54135b224f304f6aa944a4a0 bamboo_buildTimeStamp=2026-02-09T18:11:24.474Z bamboo_repository_previous_revision_number=65ba1d2d9353a41a5b08245ece52660dc3a08801 bamboo_planRepository_previousRevision=65ba1d2d9353a41a5b08245ece52660dc3a08801 bamboo_repository_git_branch=epic/JAL-4320_gradle_upgrade_to_gradle9 bamboo_buildResultKey=JB-GDB745-JOB1-2 bamboo_repository_branch_name=epic/JAL-4320_gradle_upgrade_to_gradle9 bamboo_buildPlanName=Jalview Builds - Gradle Develop Build - epic-JAL-4320_gradle_upgrade_to_gradle9 - Clover and Tests bamboo_capability_system_builder_ant_j11_Ant=/home/bamboo/buildtools/j11/ant-j11 bamboo_repository_48169021_name=Jalview Gitlab bamboo_planRepository_1_revision=4c2cf2e063ab5bcd54135b224f304f6aa944a4a0 SHLVL=1 bamboo_capability_system_builder_ant_x11_Ant=/home/bamboo/buildtools/x11-ant bamboo_repository_name=Jalview Gitlab bamboo_repository_48169021_git_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git bamboo_build_commandline_org_jfrog_bamboo_bamboo_artifactory_plugin_artifactoryGradleTask_2=/home/bamboo/buildtools/x11-gradle/bin/gradle -Pclover=true -PJAVA_VERSION=11 -Ptestng_excluded_groups=Not-bamboo clean cleanTest test JAVA_HOME=/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/ LANG=en_GB.UTF-8 bamboo_buildFailed=true bamboo_capability_system_jdk_OpenJDK_8=/home/bamboo/buildtools/jdk/jdk-8-linux-x64/jdk bamboo_planRepository_branch=epic/JAL-4320_gradle_upgrade_to_gradle9 bamboo_repository_48169021_git_username= bamboo_agentWorkingDirectory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609 bamboo_jobFailed=true bamboo_capability_system_git_executable=/bin/git bamboo_repository_git_username= bamboo_planRepository_1_previousRevision=65ba1d2d9353a41a5b08245ece52660dc3a08801 bamboo_planRepository_branchDisplayName=epic/JAL-4320_gradle_upgrade_to_gradle9 bamboo_planRepository_1_type=gitv2 bamboo_planRepository_branchName=epic/JAL-4320_gradle_upgrade_to_gradle9 _=/usr/bin/java bamboo_capability_system_builder_ant_j11_x11_Ant=/home/bamboo/buildtools/j11/x11-ant-j11 bamboo_capability_system_builderivy_Ivy=/usr bamboo_plan_storageTag=plan-47972473 bamboo_capability_system_builder_gradle_Gradle=/home/bamboo/buildtools/gradle bamboo_hg_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_hg-repositories-cache bamboo_repository_48169021_git_branch=epic/JAL-4320_gradle_upgrade_to_gradle9 bamboo_planRepository_1_username= bamboo_planRepository_type=gitv2 USER=bamboo bamboo_git_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_git-repositories-cache bamboo_repository_git_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git bamboo_capability_system_builder_ant_Ant=/usr/share/ant bamboo_capability_system_builder_mvn3_Maven_3=/usr/share/maven bamboo_tmp_directory=/srv/bamboo/bamboo-home/temp bamboo_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB745-JOB1 bamboo_planKey=JB-GDB745 bamboo_planRepository_1_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git bamboo_planRepository_username= HOME=/home/bamboo bamboo_planRepository_1_branchName=epic/JAL-4320_gradle_upgrade_to_gradle9 PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin |
| 09-Feb-2026 18:11:41 | 2414 |
| 09-Feb-2026 18:11:45 | |
| 09-Feb-2026 18:11:45 | FAILURE: Build failed with an exception. |
| 09-Feb-2026 18:11:45 | |
| 09-Feb-2026 18:11:45 | * What went wrong: |
| 09-Feb-2026 18:11:45 | A problem occurred configuring root project 'jalview'. |
| 09-Feb-2026 18:11:45 | > Could not resolve all files for configuration ':classpath'. |
| 09-Feb-2026 18:11:45 | > Could not resolve com.diffplug.spotless:spotless-plugin-gradle:8.2.0. |
| 09-Feb-2026 18:11:45 | Required by: |
| 09-Feb-2026 18:11:45 | project : > com.diffplug.spotless:com.diffplug.spotless.gradle.plugin:8.2.0 |
| 09-Feb-2026 18:11:45 | > No matching variant of com.diffplug.spotless:spotless-plugin-gradle:8.2.0 was found. The consumer was configured to find a runtime of a library compatible with Java 11, packaged as a jar, and its dependencies declared externally, as well as attribute 'org.gradle.plugin.api-version' with value '7.4.2' but: |
| 09-Feb-2026 18:11:45 | - Variant 'apiElements' capability com.diffplug.spotless:spotless-plugin-gradle:8.2.0 declares a library, packaged as a jar, and its dependencies declared externally: |
| 09-Feb-2026 18:11:45 | - Incompatible because this component declares an API of a component compatible with Java 17 and the consumer needed a runtime of a component compatible with Java 11 |
| 09-Feb-2026 18:11:45 | - Other compatible attribute: |
| 09-Feb-2026 18:11:45 | - Doesn't say anything about org.gradle.plugin.api-version (required '7.4.2') |
| 09-Feb-2026 18:11:45 | - Variant 'javadocElements' capability com.diffplug.spotless:spotless-plugin-gradle:8.2.0 declares a runtime of a component, and its dependencies declared externally: |
| 09-Feb-2026 18:11:45 | - Incompatible because this component declares documentation and the consumer needed a library |
| 09-Feb-2026 18:11:45 | - Other compatible attributes: |
| 09-Feb-2026 18:11:45 | - Doesn't say anything about its target Java version (required compatibility with Java 11) |
| 09-Feb-2026 18:11:45 | - Doesn't say anything about its elements (required them packaged as a jar) |
| 09-Feb-2026 18:11:45 | - Doesn't say anything about org.gradle.plugin.api-version (required '7.4.2') |
| 09-Feb-2026 18:11:45 | - Variant 'runtimeElements' capability com.diffplug.spotless:spotless-plugin-gradle:8.2.0 declares a runtime of a library, packaged as a jar, and its dependencies declared externally: |
| 09-Feb-2026 18:11:45 | - Incompatible because this component declares a component compatible with Java 17 and the consumer needed a component compatible with Java 11 |
| 09-Feb-2026 18:11:45 | - Other compatible attribute: |
| 09-Feb-2026 18:11:45 | - Doesn't say anything about org.gradle.plugin.api-version (required '7.4.2') |
| 09-Feb-2026 18:11:45 | - Variant 'sourcesElements' capability com.diffplug.spotless:spotless-plugin-gradle:8.2.0 declares a runtime of a component, and its dependencies declared externally: |
| 09-Feb-2026 18:11:45 | - Incompatible because this component declares documentation and the consumer needed a library |
| 09-Feb-2026 18:11:45 | - Other compatible attributes: |
| 09-Feb-2026 18:11:45 | - Doesn't say anything about its target Java version (required compatibility with Java 11) |
| 09-Feb-2026 18:11:45 | - Doesn't say anything about its elements (required them packaged as a jar) |
| 09-Feb-2026 18:11:45 | - Doesn't say anything about org.gradle.plugin.api-version (required '7.4.2') |
| 09-Feb-2026 18:11:45 | > Could not resolve com.gradleup.shadow:shadow-gradle-plugin:9.3.1. |
| 09-Feb-2026 18:11:45 | Required by: |
| 09-Feb-2026 18:11:45 | project : > com.gradleup.shadow:com.gradleup.shadow.gradle.plugin:9.3.1 |
| 09-Feb-2026 18:11:45 | > No matching variant of com.gradleup.shadow:shadow-gradle-plugin:9.3.1 was found. The consumer was configured to find a runtime of a library compatible with Java 11, packaged as a jar, and its dependencies declared externally, as well as attribute 'org.gradle.plugin.api-version' with value '7.4.2' but: |
| 09-Feb-2026 18:11:45 | - Variant 'apiElements' capabilities com.github.jengelman.gradle.plugins:shadow:9.3.1 and com.github.johnrengelman:shadow:9.3.1 and com.gradleup.shadow:shadow-gradle-plugin:9.3.1 and gradle.plugin.com.github.jengelman.gradle.plugins:shadow:9.3.1 and gradle.plugin.com.github.johnrengelman:shadow:9.3.1 and io.github.goooler.shadow:shadow-gradle-plugin:9.3.1 declares a library, packaged as a jar, and its dependencies declared externally: |
| 09-Feb-2026 18:11:45 | - Incompatible because this component declares an API of a component compatible with Java 17, as well as attribute 'org.gradle.plugin.api-version' with value '9.0.0' and the consumer needed a runtime of a component compatible with Java 11, as well as attribute 'org.gradle.plugin.api-version' with value '7.4.2' |
| 09-Feb-2026 18:11:45 | - Variant 'javadocElements' capabilities com.github.jengelman.gradle.plugins:shadow:9.3.1 and com.github.johnrengelman:shadow:9.3.1 and com.gradleup.shadow:shadow-gradle-plugin:9.3.1 and gradle.plugin.com.github.jengelman.gradle.plugins:shadow:9.3.1 and gradle.plugin.com.github.johnrengelman:shadow:9.3.1 and io.github.goooler.shadow:shadow-gradle-plugin:9.3.1 declares a runtime of a component, and its dependencies declared externally: |
| 09-Feb-2026 18:11:45 | - Incompatible because this component declares documentation and the consumer needed a library |
| 09-Feb-2026 18:11:45 | - Other compatible attributes: |
| 09-Feb-2026 18:11:45 | - Doesn't say anything about its target Java version (required compatibility with Java 11) |
| 09-Feb-2026 18:11:45 | - Doesn't say anything about its elements (required them packaged as a jar) |
| 09-Feb-2026 18:11:45 | - Doesn't say anything about org.gradle.plugin.api-version (required '7.4.2') |
| 09-Feb-2026 18:11:45 | - Variant 'runtimeElements' capabilities com.github.jengelman.gradle.plugins:shadow:9.3.1 and com.github.johnrengelman:shadow:9.3.1 and com.gradleup.shadow:shadow-gradle-plugin:9.3.1 and gradle.plugin.com.github.jengelman.gradle.plugins:shadow:9.3.1 and gradle.plugin.com.github.johnrengelman:shadow:9.3.1 and io.github.goooler.shadow:shadow-gradle-plugin:9.3.1 declares a runtime of a library, packaged as a jar, and its dependencies declared externally: |
| 09-Feb-2026 18:11:45 | - Incompatible because this component declares a component compatible with Java 17 and the consumer needed a component compatible with Java 11 |
| 09-Feb-2026 18:11:45 | - Other compatible attribute: |
| 09-Feb-2026 18:11:45 | - Doesn't say anything about org.gradle.plugin.api-version (required '7.4.2') |
| 09-Feb-2026 18:11:45 | - Variant 'sourcesElements' capabilities com.github.jengelman.gradle.plugins:shadow:9.3.1 and com.github.johnrengelman:shadow:9.3.1 and com.gradleup.shadow:shadow-gradle-plugin:9.3.1 and gradle.plugin.com.github.jengelman.gradle.plugins:shadow:9.3.1 and gradle.plugin.com.github.johnrengelman:shadow:9.3.1 and io.github.goooler.shadow:shadow-gradle-plugin:9.3.1 declares a runtime of a component, and its dependencies declared externally: |
| 09-Feb-2026 18:11:45 | - Incompatible because this component declares documentation and the consumer needed a library |
| 09-Feb-2026 18:11:45 | - Other compatible attributes: |
| 09-Feb-2026 18:11:45 | - Doesn't say anything about its target Java version (required compatibility with Java 11) |
| 09-Feb-2026 18:11:45 | - Doesn't say anything about its elements (required them packaged as a jar) |
| 09-Feb-2026 18:11:45 | - Doesn't say anything about org.gradle.plugin.api-version (required '7.4.2') |
| 09-Feb-2026 18:11:45 | |
| 09-Feb-2026 18:11:45 | * Try: |
| 09-Feb-2026 18:11:45 | > Run with --stacktrace option to get the stack trace. |
| 09-Feb-2026 18:11:45 | > Run with --info or --debug option to get more log output. |
| 09-Feb-2026 18:11:45 | > Run with --scan to get full insights. |
| 09-Feb-2026 18:11:45 | |
| 09-Feb-2026 18:11:45 | * Get more help at https://help.gradle.org |
| 09-Feb-2026 18:11:45 | |
| 09-Feb-2026 18:11:45 | BUILD FAILED in 3s |
| 09-Feb-2026 18:11:45 | |
| 09-Feb-2026 18:11:45 | Failing task since return code of [/home/bamboo/buildtools/x11-gradle/bin/gradle --no-daemon -Pclover=true -PJAVA_VERSION=11 cloverReport] was 1 while expected 0 |
| 09-Feb-2026 18:11:45 | Finished task 'Clover Report' with result: Failed |
| 09-Feb-2026 18:11:45 | Starting task 'TestNG Parser' of type 'com.atlassian.bamboo.plugins.testresultparser:task.testresultparser.testng' |
| 09-Feb-2026 18:11:45 | Parsing test results under /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB745-JOB1... |
| 09-Feb-2026 18:11:45 | Failing task since test cases were expected but none were found. |
| 09-Feb-2026 18:11:45 | Finished task 'TestNG Parser' with result: Failed |
| 09-Feb-2026 18:11:45 | Running post build plugin 'NCover Results Collector' |
| 09-Feb-2026 18:11:45 | Running post build plugin 'Artifact Copier' |
| 09-Feb-2026 18:11:45 | Publishing an artifact: Clover Report (System) |
| 09-Feb-2026 18:11:45 | Unable to publish artifact [Clover Report (System)]: the source directory /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB745-JOB1/build/reports/clover does not exist. |
| 09-Feb-2026 18:11:45 | The artifact hasn't been successfully published after 3.178 ms |
| 09-Feb-2026 18:11:45 | Publishing an artifact: TestNG report |
| 09-Feb-2026 18:11:45 | Unable to publish artifact [TestNG report]: the source directory /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB745-JOB1/build/reports/tests/test does not exist. |
| 09-Feb-2026 18:11:45 | The artifact hasn't been successfully published after 69.79 μs |
| 09-Feb-2026 18:11:45 | Running post build plugin 'Artifactory Release Management Staging' |
| 09-Feb-2026 18:11:45 | Running post build plugin 'Artifactory Build Info Copier' |
| 09-Feb-2026 18:11:45 | Running post build plugin 'Artifactory Gradle Properties Info Copier' |
| 09-Feb-2026 18:11:45 | Running post build plugin 'npm Cache Cleanup' |
| 09-Feb-2026 18:11:45 | Running post build plugin 'Clover Results Collector' |
| 09-Feb-2026 18:11:45 | Failed to execute plugin 'Clover Results Collector' with error: No file matches the specified pattern:build/reports/clover/clover.xml in [/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB745-JOB1] |
| 09-Feb-2026 18:11:45 | Running post build plugin 'Docker Container Cleanup' |
| 09-Feb-2026 18:11:45 | Finalising the build... |
| 09-Feb-2026 18:11:45 | Stopping timer. |
| 09-Feb-2026 18:11:45 | Build JB-GDB745-JOB1-2 completed. |
| 09-Feb-2026 18:11:45 | Running on server: post build plugin 'NCover Results Collector' |
| 09-Feb-2026 18:11:45 | Running on server: post build plugin 'Build Hanging Detection Configuration' |
| 09-Feb-2026 18:11:45 | Running on server: post build plugin 'Clover Delta Calculator' |
| 09-Feb-2026 18:11:45 | Running on server: post build plugin 'Maven Dependencies Postprocessor' |
| 09-Feb-2026 18:11:45 | All post build plugins have finished |
| 09-Feb-2026 18:11:45 | Generating build results summary... |
| 09-Feb-2026 18:11:45 | Saving build results to disk... |
| 09-Feb-2026 18:11:45 | Logging substituted variables... |
| 09-Feb-2026 18:11:45 | Indexing build results... |
| 09-Feb-2026 18:11:45 | Finished building JB-GDB745-JOB1-2. |