simple 09-Feb-2026 18:11:24 Build Jalview Builds - Gradle Develop Build - epic-JAL-4320_gradle_upgrade_to_gradle9 - Clover and Tests #2 (JB-GDB745-JOB1-2) started building on agent Default Agent simple 09-Feb-2026 18:11:24 simple 09-Feb-2026 18:11:24 Build working directory is /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB745-JOB1 simple 09-Feb-2026 18:11:24 Executing build Jalview Builds - Gradle Develop Build - epic-JAL-4320_gradle_upgrade_to_gradle9 - Clover and Tests #2 (JB-GDB745-JOB1-2) simple 09-Feb-2026 18:11:24 Starting task 'Checkout Default Repository' of type 'com.atlassian.bamboo.plugins.vcs:task.vcs.checkout' simple 09-Feb-2026 18:11:24 Checking out into /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB745-JOB1 simple 09-Feb-2026 18:11:24 Updating source code to revision: 4c2cf2e063ab5bcd54135b224f304f6aa944a4a0 simple 09-Feb-2026 18:11:24 Fetching 'refs/heads/epic/JAL-4320_gradle_upgrade_to_gradle9' from 'https://gitlab.jalview.org/jalview/jalview.git'. simple 09-Feb-2026 18:11:24 Checking out revision 4c2cf2e063ab5bcd54135b224f304f6aa944a4a0. simple 09-Feb-2026 18:11:24 From file:///srv/bamboo/bamboo-home/xml-data/build-dir/_git-repositories-cache/62ce6c67e11163a982952b2962d6d7b0872110f0 simple 09-Feb-2026 18:11:24 65ba1d2..4c2cf2e epic/JAL-4320_gradle_upgrade_to_gradle9 -> origin/epic/JAL-4320_gradle_upgrade_to_gradle9 simple 09-Feb-2026 18:11:24 205fb76..dbbef33 bug/JAL-4624_JAL-4623_Mul_SS_in_PCA -> origin/bug/JAL-4624_JAL-4623_Mul_SS_in_PCA simple 09-Feb-2026 18:11:25 Already on 'epic/JAL-4320_gradle_upgrade_to_gradle9' simple 09-Feb-2026 18:11:25 Your branch is behind 'origin/epic/JAL-4320_gradle_upgrade_to_gradle9' by 1 commit, and can be fast-forwarded. simple 09-Feb-2026 18:11:25 (use "git pull" to update your local branch) simple 09-Feb-2026 18:11:25 HEAD is now at 4c2cf2e JAL-4320 Removed all gradle 9 and 10 deprecation warnings for compileJava, shadowJar, installers, jalviewjs tasks simple 09-Feb-2026 18:11:25 Updated source code to revision: 4c2cf2e063ab5bcd54135b224f304f6aa944a4a0 simple 09-Feb-2026 18:11:25 Finished task 'Checkout Default Repository' with result: Success simple 09-Feb-2026 18:11:25 Running pre-build action: VCS Version Collector simple 09-Feb-2026 18:11:25 Running pre-build action: Artifactory Release Staging simple 09-Feb-2026 18:11:25 Starting task 'Run tests with openclover under gradle' of type 'org.jfrog.bamboo.bamboo-artifactory-plugin:artifactoryGradleTask' simple 09-Feb-2026 18:11:25 Bamboo Artifactory Plugin version: 2.6.2 command 09-Feb-2026 18:11:25 Beginning to execute external process for build 'Jalview Builds - Gradle Develop Build - epic-JAL-4320_gradle_upgrade_to_gradle9 - Clover and Tests #2 (JB-GDB745-JOB1-2)'\n ... running command line: \n/home/bamboo/buildtools/x11-gradle/bin/gradle -Pclover=true -PJAVA_VERSION=11 -Ptestng_excluded_groups=Not-bamboo clean cleanTest test\n ... in: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB745-JOB1\n ... using extra environment variables: \nbamboo_planRepository_1_branch=epic/JAL-4320_gradle_upgrade_to_gradle9\nbamboo_capability_system_builder_maven_Artifactory_Maven_3=/usr\nCATALINA_PID=/home/bamboo/latest/work/bamboo.pid\nbamboo_planRepository_1_branchDisplayName=epic/JAL-4320_gradle_upgrade_to_gradle9\nbamboo_repository_revision_number=4c2cf2e063ab5bcd54135b224f304f6aa944a4a0\nbamboo_repository_48169021_branch_name=epic/JAL-4320_gradle_upgrade_to_gradle9\nbamboo_resultsUrl=https://builds.jalview.org/browse/JB-GDB745-JOB1-2\nJAVA_OPTS=-Xms512m -Xmx1024m -Dbamboo.home=/srv/bamboo/bamboo-home -Djdk.tls.ephemeralDHKeySize=2048\nbamboo_build_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB745-JOB1\nbamboo_planRepository_1_name=Jalview Gitlab\nbamboo_buildKey=JB-GDB745-JOB1\nbamboo_repository_48169021_previous_revision_number=65ba1d2d9353a41a5b08245ece52660dc3a08801\nbamboo_shortPlanName=epic-JAL-4320_gradle_upgrade_to_gradle9\nbamboo_planRepository_name=Jalview Gitlab\nLOGNAME=bamboo\nbamboo_buildNumber=2\nPWD=/\nbamboo_capability_system_builder_command_Eclipse_2019_09=/home/bamboo/buildtools/eclipse/jee-2019-09/eclipse/eclipse\nbamboo_shortJobName=Clover and Tests\nbamboo_buildResultsUrl=https://builds.jalview.org/browse/JB-GDB745-JOB1-2\nbamboo_planRepository_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git\nSHELL=/bin/bash\nbamboo_agentId=196609\nbamboo_planName=Jalview Builds - Gradle Develop Build - epic-JAL-4320_gradle_upgrade_to_gradle9\nbamboo_shortPlanKey=GDB745\nbamboo_repository_48169021_revision_number=4c2cf2e063ab5bcd54135b224f304f6aa944a4a0\nbamboo_shortJobKey=JOB1\nbamboo_capability_system_jdk_OpenJDK_11=/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk\nbamboo_planRepository_revision=4c2cf2e063ab5bcd54135b224f304f6aa944a4a0\nbamboo_buildTimeStamp=2026-02-09T18:11:24.474Z\nbamboo_repository_previous_revision_number=65ba1d2d9353a41a5b08245ece52660dc3a08801\nbamboo_planRepository_previousRevision=65ba1d2d9353a41a5b08245ece52660dc3a08801\nbamboo_repository_git_branch=epic/JAL-4320_gradle_upgrade_to_gradle9\nbamboo_buildResultKey=JB-GDB745-JOB1-2\nbamboo_repository_branch_name=epic/JAL-4320_gradle_upgrade_to_gradle9\nbamboo_buildPlanName=Jalview Builds - Gradle Develop Build - epic-JAL-4320_gradle_upgrade_to_gradle9 - Clover and Tests\nbamboo_capability_system_builder_ant_j11_Ant=/home/bamboo/buildtools/j11/ant-j11\nbamboo_repository_48169021_name=Jalview Gitlab\nbamboo_planRepository_1_revision=4c2cf2e063ab5bcd54135b224f304f6aa944a4a0\nSHLVL=1\nbamboo_capability_system_builder_ant_x11_Ant=/home/bamboo/buildtools/x11-ant\nbamboo_repository_name=Jalview Gitlab\nbamboo_repository_48169021_git_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git\nJAVA_HOME=/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/\nLANG=en_GB.UTF-8\nbamboo_buildFailed=false\nbamboo_capability_system_jdk_OpenJDK_8=/home/bamboo/buildtools/jdk/jdk-8-linux-x64/jdk\nbamboo_planRepository_branch=epic/JAL-4320_gradle_upgrade_to_gradle9\nbamboo_repository_48169021_git_username=\nbamboo_agentWorkingDirectory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609\nbamboo_capability_system_git_executable=/bin/git\nbamboo_repository_git_username=\nbamboo_planRepository_1_previousRevision=65ba1d2d9353a41a5b08245ece52660dc3a08801\nbamboo_planRepository_branchDisplayName=epic/JAL-4320_gradle_upgrade_to_gradle9\nbamboo_planRepository_1_type=gitv2\nbamboo_planRepository_branchName=epic/JAL-4320_gradle_upgrade_to_gradle9\n_=/usr/bin/java\nbamboo_capability_system_builder_ant_j11_x11_Ant=/home/bamboo/buildtools/j11/x11-ant-j11\nbamboo_capability_system_builderivy_Ivy=/usr\nbamboo_plan_storageTag=plan-47972473\nbamboo_capability_system_builder_gradle_Gradle=/home/bamboo/buildtools/gradle\nbamboo_hg_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_hg-repositories-cache\nbamboo_repository_48169021_git_branch=epic/JAL-4320_gradle_upgrade_to_gradle9\nbamboo_planRepository_1_username=\nbamboo_planRepository_type=gitv2\nUSER=bamboo\nbamboo_git_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_git-repositories-cache\nbamboo_repository_git_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git\nbamboo_capability_system_builder_ant_Ant=/usr/share/ant\nbamboo_capability_system_builder_mvn3_Maven_3=/usr/share/maven\nbamboo_tmp_directory=/srv/bamboo/bamboo-home/temp\nbamboo_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB745-JOB1\nbamboo_planKey=JB-GDB745\nbamboo_planRepository_1_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git\nbamboo_planRepository_username=\nHOME=/home/bamboo\nbamboo_planRepository_1_branchName=epic/JAL-4320_gradle_upgrade_to_gradle9\nPATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin\n build 09-Feb-2026 18:11:25 2414 build 09-Feb-2026 18:11:26 Starting a Gradle Daemon (subsequent builds will be faster) error 09-Feb-2026 18:11:41 error 09-Feb-2026 18:11:41 FAILURE: Build failed with an exception. error 09-Feb-2026 18:11:41 error 09-Feb-2026 18:11:41 * What went wrong: error 09-Feb-2026 18:11:41 A problem occurred configuring root project 'jalview'. error 09-Feb-2026 18:11:41 > Could not resolve all files for configuration ':classpath'. error 09-Feb-2026 18:11:41 > Could not resolve com.diffplug.spotless:spotless-plugin-gradle:8.2.0. error 09-Feb-2026 18:11:41 Required by: error 09-Feb-2026 18:11:41 project : > com.diffplug.spotless:com.diffplug.spotless.gradle.plugin:8.2.0 error 09-Feb-2026 18:11:41 > No matching variant of com.diffplug.spotless:spotless-plugin-gradle:8.2.0 was found. The consumer was configured to find a runtime of a library compatible with Java 11, packaged as a jar, and its dependencies declared externally, as well as attribute 'org.gradle.plugin.api-version' with value '7.4.2' but: error 09-Feb-2026 18:11:41 - Variant 'apiElements' capability com.diffplug.spotless:spotless-plugin-gradle:8.2.0 declares a library, packaged as a jar, and its dependencies declared externally: error 09-Feb-2026 18:11:41 - Incompatible because this component declares an API of a component compatible with Java 17 and the consumer needed a runtime of a component compatible with Java 11 error 09-Feb-2026 18:11:41 - Other compatible attribute: error 09-Feb-2026 18:11:41 - Doesn't say anything about org.gradle.plugin.api-version (required '7.4.2') error 09-Feb-2026 18:11:41 - Variant 'javadocElements' capability com.diffplug.spotless:spotless-plugin-gradle:8.2.0 declares a runtime of a component, and its dependencies declared externally: error 09-Feb-2026 18:11:41 - Incompatible because this component declares documentation and the consumer needed a library error 09-Feb-2026 18:11:41 - Other compatible attributes: error 09-Feb-2026 18:11:41 - Doesn't say anything about its target Java version (required compatibility with Java 11) error 09-Feb-2026 18:11:41 - Doesn't say anything about its elements (required them packaged as a jar) error 09-Feb-2026 18:11:41 - Doesn't say anything about org.gradle.plugin.api-version (required '7.4.2') error 09-Feb-2026 18:11:41 - Variant 'runtimeElements' capability com.diffplug.spotless:spotless-plugin-gradle:8.2.0 declares a runtime of a library, packaged as a jar, and its dependencies declared externally: error 09-Feb-2026 18:11:41 - Incompatible because this component declares a component compatible with Java 17 and the consumer needed a component compatible with Java 11 error 09-Feb-2026 18:11:41 - Other compatible attribute: error 09-Feb-2026 18:11:41 - Doesn't say anything about org.gradle.plugin.api-version (required '7.4.2') error 09-Feb-2026 18:11:41 - Variant 'sourcesElements' capability com.diffplug.spotless:spotless-plugin-gradle:8.2.0 declares a runtime of a component, and its dependencies declared externally: error 09-Feb-2026 18:11:41 - Incompatible because this component declares documentation and the consumer needed a library error 09-Feb-2026 18:11:41 - Other compatible attributes: error 09-Feb-2026 18:11:41 - Doesn't say anything about its target Java version (required compatibility with Java 11) error 09-Feb-2026 18:11:41 - Doesn't say anything about its elements (required them packaged as a jar) error 09-Feb-2026 18:11:41 - Doesn't say anything about org.gradle.plugin.api-version (required '7.4.2') error 09-Feb-2026 18:11:41 > Could not resolve com.gradleup.shadow:shadow-gradle-plugin:9.3.1. error 09-Feb-2026 18:11:41 Required by: error 09-Feb-2026 18:11:41 project : > com.gradleup.shadow:com.gradleup.shadow.gradle.plugin:9.3.1 error 09-Feb-2026 18:11:41 > No matching variant of com.gradleup.shadow:shadow-gradle-plugin:9.3.1 was found. The consumer was configured to find a runtime of a library compatible with Java 11, packaged as a jar, and its dependencies declared externally, as well as attribute 'org.gradle.plugin.api-version' with value '7.4.2' but: error 09-Feb-2026 18:11:41 - Variant 'apiElements' capabilities com.github.jengelman.gradle.plugins:shadow:9.3.1 and com.github.johnrengelman:shadow:9.3.1 and com.gradleup.shadow:shadow-gradle-plugin:9.3.1 and gradle.plugin.com.github.jengelman.gradle.plugins:shadow:9.3.1 and gradle.plugin.com.github.johnrengelman:shadow:9.3.1 and io.github.goooler.shadow:shadow-gradle-plugin:9.3.1 declares a library, packaged as a jar, and its dependencies declared externally: error 09-Feb-2026 18:11:41 - Incompatible because this component declares an API of a component compatible with Java 17, as well as attribute 'org.gradle.plugin.api-version' with value '9.0.0' and the consumer needed a runtime of a component compatible with Java 11, as well as attribute 'org.gradle.plugin.api-version' with value '7.4.2' error 09-Feb-2026 18:11:41 - Variant 'javadocElements' capabilities com.github.jengelman.gradle.plugins:shadow:9.3.1 and com.github.johnrengelman:shadow:9.3.1 and com.gradleup.shadow:shadow-gradle-plugin:9.3.1 and gradle.plugin.com.github.jengelman.gradle.plugins:shadow:9.3.1 and gradle.plugin.com.github.johnrengelman:shadow:9.3.1 and io.github.goooler.shadow:shadow-gradle-plugin:9.3.1 declares a runtime of a component, and its dependencies declared externally: error 09-Feb-2026 18:11:41 - Incompatible because this component declares documentation and the consumer needed a library error 09-Feb-2026 18:11:41 - Other compatible attributes: error 09-Feb-2026 18:11:41 - Doesn't say anything about its target Java version (required compatibility with Java 11) error 09-Feb-2026 18:11:41 - Doesn't say anything about its elements (required them packaged as a jar) error 09-Feb-2026 18:11:41 - Doesn't say anything about org.gradle.plugin.api-version (required '7.4.2') error 09-Feb-2026 18:11:41 - Variant 'runtimeElements' capabilities com.github.jengelman.gradle.plugins:shadow:9.3.1 and com.github.johnrengelman:shadow:9.3.1 and com.gradleup.shadow:shadow-gradle-plugin:9.3.1 and gradle.plugin.com.github.jengelman.gradle.plugins:shadow:9.3.1 and gradle.plugin.com.github.johnrengelman:shadow:9.3.1 and io.github.goooler.shadow:shadow-gradle-plugin:9.3.1 declares a runtime of a library, packaged as a jar, and its dependencies declared externally: error 09-Feb-2026 18:11:41 - Incompatible because this component declares a component compatible with Java 17 and the consumer needed a component compatible with Java 11 error 09-Feb-2026 18:11:41 - Other compatible attribute: error 09-Feb-2026 18:11:41 - Doesn't say anything about org.gradle.plugin.api-version (required '7.4.2') error 09-Feb-2026 18:11:41 - Variant 'sourcesElements' capabilities com.github.jengelman.gradle.plugins:shadow:9.3.1 and com.github.johnrengelman:shadow:9.3.1 and com.gradleup.shadow:shadow-gradle-plugin:9.3.1 and gradle.plugin.com.github.jengelman.gradle.plugins:shadow:9.3.1 and gradle.plugin.com.github.johnrengelman:shadow:9.3.1 and io.github.goooler.shadow:shadow-gradle-plugin:9.3.1 declares a runtime of a component, and its dependencies declared externally: error 09-Feb-2026 18:11:41 - Incompatible because this component declares documentation and the consumer needed a library error 09-Feb-2026 18:11:41 - Other compatible attributes: error 09-Feb-2026 18:11:41 - Doesn't say anything about its target Java version (required compatibility with Java 11) error 09-Feb-2026 18:11:41 - Doesn't say anything about its elements (required them packaged as a jar) error 09-Feb-2026 18:11:41 - Doesn't say anything about org.gradle.plugin.api-version (required '7.4.2') error 09-Feb-2026 18:11:41 error 09-Feb-2026 18:11:41 * Try: error 09-Feb-2026 18:11:41 > Run with --stacktrace option to get the stack trace. error 09-Feb-2026 18:11:41 > Run with --info or --debug option to get more log output. error 09-Feb-2026 18:11:41 > Run with --scan to get full insights. error 09-Feb-2026 18:11:41 error 09-Feb-2026 18:11:41 * Get more help at https://help.gradle.org error 09-Feb-2026 18:11:41 error 09-Feb-2026 18:11:41 BUILD FAILED in 15s simple 09-Feb-2026 18:11:41 simple 09-Feb-2026 18:11:41 Failing task since return code of [/home/bamboo/buildtools/x11-gradle/bin/gradle -Pclover=true -PJAVA_VERSION=11 -Ptestng_excluded_groups=Not-bamboo clean cleanTest test] was 1 while expected 0 simple 09-Feb-2026 18:11:41 Finished task 'Run tests with openclover under gradle' with result: Failed simple 09-Feb-2026 18:11:41 Starting task 'Clover Report' of type 'org.jfrog.bamboo.bamboo-artifactory-plugin:artifactoryGradleTask' simple 09-Feb-2026 18:11:41 Bamboo Artifactory Plugin version: 2.6.2 command 09-Feb-2026 18:11:41 Beginning to execute external process for build 'Jalview Builds - Gradle Develop Build - epic-JAL-4320_gradle_upgrade_to_gradle9 - Clover and Tests #2 (JB-GDB745-JOB1-2)'\n ... running command line: \n/home/bamboo/buildtools/x11-gradle/bin/gradle --no-daemon -Pclover=true -PJAVA_VERSION=11 cloverReport\n ... in: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB745-JOB1\n ... using extra environment variables: \nbamboo_planRepository_1_branch=epic/JAL-4320_gradle_upgrade_to_gradle9\nbamboo_capability_system_builder_maven_Artifactory_Maven_3=/usr\nCATALINA_PID=/home/bamboo/latest/work/bamboo.pid\nbamboo_planRepository_1_branchDisplayName=epic/JAL-4320_gradle_upgrade_to_gradle9\nbamboo_repository_revision_number=4c2cf2e063ab5bcd54135b224f304f6aa944a4a0\nbamboo_repository_48169021_branch_name=epic/JAL-4320_gradle_upgrade_to_gradle9\nbamboo_resultsUrl=https://builds.jalview.org/browse/JB-GDB745-JOB1-2\nJAVA_OPTS=-Xms512m -Xmx1024m -Dbamboo.home=/srv/bamboo/bamboo-home -Djdk.tls.ephemeralDHKeySize=2048\nbamboo_build_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB745-JOB1\nbamboo_planRepository_1_name=Jalview Gitlab\nbamboo_buildKey=JB-GDB745-JOB1\nbamboo_repository_48169021_previous_revision_number=65ba1d2d9353a41a5b08245ece52660dc3a08801\nbamboo_shortPlanName=epic-JAL-4320_gradle_upgrade_to_gradle9\nbamboo_planRepository_name=Jalview Gitlab\nLOGNAME=bamboo\nbamboo_buildNumber=2\nPWD=/\nbamboo_capability_system_builder_command_Eclipse_2019_09=/home/bamboo/buildtools/eclipse/jee-2019-09/eclipse/eclipse\nbamboo_shortJobName=Clover and Tests\nbamboo_buildResultsUrl=https://builds.jalview.org/browse/JB-GDB745-JOB1-2\nbamboo_planRepository_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git\nSHELL=/bin/bash\nbamboo_agentId=196609\nbamboo_planName=Jalview Builds - Gradle Develop Build - epic-JAL-4320_gradle_upgrade_to_gradle9\nbamboo_shortPlanKey=GDB745\nbamboo_repository_48169021_revision_number=4c2cf2e063ab5bcd54135b224f304f6aa944a4a0\nbamboo_shortJobKey=JOB1\nbamboo_capability_system_jdk_OpenJDK_11=/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk\nbamboo_planRepository_revision=4c2cf2e063ab5bcd54135b224f304f6aa944a4a0\nbamboo_buildTimeStamp=2026-02-09T18:11:24.474Z\nbamboo_repository_previous_revision_number=65ba1d2d9353a41a5b08245ece52660dc3a08801\nbamboo_planRepository_previousRevision=65ba1d2d9353a41a5b08245ece52660dc3a08801\nbamboo_repository_git_branch=epic/JAL-4320_gradle_upgrade_to_gradle9\nbamboo_buildResultKey=JB-GDB745-JOB1-2\nbamboo_repository_branch_name=epic/JAL-4320_gradle_upgrade_to_gradle9\nbamboo_buildPlanName=Jalview Builds - Gradle Develop Build - epic-JAL-4320_gradle_upgrade_to_gradle9 - Clover and Tests\nbamboo_capability_system_builder_ant_j11_Ant=/home/bamboo/buildtools/j11/ant-j11\nbamboo_repository_48169021_name=Jalview Gitlab\nbamboo_planRepository_1_revision=4c2cf2e063ab5bcd54135b224f304f6aa944a4a0\nSHLVL=1\nbamboo_capability_system_builder_ant_x11_Ant=/home/bamboo/buildtools/x11-ant\nbamboo_repository_name=Jalview Gitlab\nbamboo_repository_48169021_git_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git\nbamboo_build_commandline_org_jfrog_bamboo_bamboo_artifactory_plugin_artifactoryGradleTask_2=/home/bamboo/buildtools/x11-gradle/bin/gradle -Pclover=true -PJAVA_VERSION=11 -Ptestng_excluded_groups=Not-bamboo clean cleanTest test\nJAVA_HOME=/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/\nLANG=en_GB.UTF-8\nbamboo_buildFailed=true\nbamboo_capability_system_jdk_OpenJDK_8=/home/bamboo/buildtools/jdk/jdk-8-linux-x64/jdk\nbamboo_planRepository_branch=epic/JAL-4320_gradle_upgrade_to_gradle9\nbamboo_repository_48169021_git_username=\nbamboo_agentWorkingDirectory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609\nbamboo_jobFailed=true\nbamboo_capability_system_git_executable=/bin/git\nbamboo_repository_git_username=\nbamboo_planRepository_1_previousRevision=65ba1d2d9353a41a5b08245ece52660dc3a08801\nbamboo_planRepository_branchDisplayName=epic/JAL-4320_gradle_upgrade_to_gradle9\nbamboo_planRepository_1_type=gitv2\nbamboo_planRepository_branchName=epic/JAL-4320_gradle_upgrade_to_gradle9\n_=/usr/bin/java\nbamboo_capability_system_builder_ant_j11_x11_Ant=/home/bamboo/buildtools/j11/x11-ant-j11\nbamboo_capability_system_builderivy_Ivy=/usr\nbamboo_plan_storageTag=plan-47972473\nbamboo_capability_system_builder_gradle_Gradle=/home/bamboo/buildtools/gradle\nbamboo_hg_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_hg-repositories-cache\nbamboo_repository_48169021_git_branch=epic/JAL-4320_gradle_upgrade_to_gradle9\nbamboo_planRepository_1_username=\nbamboo_planRepository_type=gitv2\nUSER=bamboo\nbamboo_git_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_git-repositories-cache\nbamboo_repository_git_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git\nbamboo_capability_system_builder_ant_Ant=/usr/share/ant\nbamboo_capability_system_builder_mvn3_Maven_3=/usr/share/maven\nbamboo_tmp_directory=/srv/bamboo/bamboo-home/temp\nbamboo_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB745-JOB1\nbamboo_planKey=JB-GDB745\nbamboo_planRepository_1_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git\nbamboo_planRepository_username=\nHOME=/home/bamboo\nbamboo_planRepository_1_branchName=epic/JAL-4320_gradle_upgrade_to_gradle9\nPATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin\n build 09-Feb-2026 18:11:41 2414 error 09-Feb-2026 18:11:45 error 09-Feb-2026 18:11:45 FAILURE: Build failed with an exception. error 09-Feb-2026 18:11:45 error 09-Feb-2026 18:11:45 * What went wrong: error 09-Feb-2026 18:11:45 A problem occurred configuring root project 'jalview'. error 09-Feb-2026 18:11:45 > Could not resolve all files for configuration ':classpath'. error 09-Feb-2026 18:11:45 > Could not resolve com.diffplug.spotless:spotless-plugin-gradle:8.2.0. error 09-Feb-2026 18:11:45 Required by: error 09-Feb-2026 18:11:45 project : > com.diffplug.spotless:com.diffplug.spotless.gradle.plugin:8.2.0 error 09-Feb-2026 18:11:45 > No matching variant of com.diffplug.spotless:spotless-plugin-gradle:8.2.0 was found. The consumer was configured to find a runtime of a library compatible with Java 11, packaged as a jar, and its dependencies declared externally, as well as attribute 'org.gradle.plugin.api-version' with value '7.4.2' but: error 09-Feb-2026 18:11:45 - Variant 'apiElements' capability com.diffplug.spotless:spotless-plugin-gradle:8.2.0 declares a library, packaged as a jar, and its dependencies declared externally: error 09-Feb-2026 18:11:45 - Incompatible because this component declares an API of a component compatible with Java 17 and the consumer needed a runtime of a component compatible with Java 11 error 09-Feb-2026 18:11:45 - Other compatible attribute: error 09-Feb-2026 18:11:45 - Doesn't say anything about org.gradle.plugin.api-version (required '7.4.2') error 09-Feb-2026 18:11:45 - Variant 'javadocElements' capability com.diffplug.spotless:spotless-plugin-gradle:8.2.0 declares a runtime of a component, and its dependencies declared externally: error 09-Feb-2026 18:11:45 - Incompatible because this component declares documentation and the consumer needed a library error 09-Feb-2026 18:11:45 - Other compatible attributes: error 09-Feb-2026 18:11:45 - Doesn't say anything about its target Java version (required compatibility with Java 11) error 09-Feb-2026 18:11:45 - Doesn't say anything about its elements (required them packaged as a jar) error 09-Feb-2026 18:11:45 - Doesn't say anything about org.gradle.plugin.api-version (required '7.4.2') error 09-Feb-2026 18:11:45 - Variant 'runtimeElements' capability com.diffplug.spotless:spotless-plugin-gradle:8.2.0 declares a runtime of a library, packaged as a jar, and its dependencies declared externally: error 09-Feb-2026 18:11:45 - Incompatible because this component declares a component compatible with Java 17 and the consumer needed a component compatible with Java 11 error 09-Feb-2026 18:11:45 - Other compatible attribute: error 09-Feb-2026 18:11:45 - Doesn't say anything about org.gradle.plugin.api-version (required '7.4.2') error 09-Feb-2026 18:11:45 - Variant 'sourcesElements' capability com.diffplug.spotless:spotless-plugin-gradle:8.2.0 declares a runtime of a component, and its dependencies declared externally: error 09-Feb-2026 18:11:45 - Incompatible because this component declares documentation and the consumer needed a library error 09-Feb-2026 18:11:45 - Other compatible attributes: error 09-Feb-2026 18:11:45 - Doesn't say anything about its target Java version (required compatibility with Java 11) error 09-Feb-2026 18:11:45 - Doesn't say anything about its elements (required them packaged as a jar) error 09-Feb-2026 18:11:45 - Doesn't say anything about org.gradle.plugin.api-version (required '7.4.2') error 09-Feb-2026 18:11:45 > Could not resolve com.gradleup.shadow:shadow-gradle-plugin:9.3.1. error 09-Feb-2026 18:11:45 Required by: error 09-Feb-2026 18:11:45 project : > com.gradleup.shadow:com.gradleup.shadow.gradle.plugin:9.3.1 error 09-Feb-2026 18:11:45 > No matching variant of com.gradleup.shadow:shadow-gradle-plugin:9.3.1 was found. The consumer was configured to find a runtime of a library compatible with Java 11, packaged as a jar, and its dependencies declared externally, as well as attribute 'org.gradle.plugin.api-version' with value '7.4.2' but: error 09-Feb-2026 18:11:45 - Variant 'apiElements' capabilities com.github.jengelman.gradle.plugins:shadow:9.3.1 and com.github.johnrengelman:shadow:9.3.1 and com.gradleup.shadow:shadow-gradle-plugin:9.3.1 and gradle.plugin.com.github.jengelman.gradle.plugins:shadow:9.3.1 and gradle.plugin.com.github.johnrengelman:shadow:9.3.1 and io.github.goooler.shadow:shadow-gradle-plugin:9.3.1 declares a library, packaged as a jar, and its dependencies declared externally: error 09-Feb-2026 18:11:45 - Incompatible because this component declares an API of a component compatible with Java 17, as well as attribute 'org.gradle.plugin.api-version' with value '9.0.0' and the consumer needed a runtime of a component compatible with Java 11, as well as attribute 'org.gradle.plugin.api-version' with value '7.4.2' error 09-Feb-2026 18:11:45 - Variant 'javadocElements' capabilities com.github.jengelman.gradle.plugins:shadow:9.3.1 and com.github.johnrengelman:shadow:9.3.1 and com.gradleup.shadow:shadow-gradle-plugin:9.3.1 and gradle.plugin.com.github.jengelman.gradle.plugins:shadow:9.3.1 and gradle.plugin.com.github.johnrengelman:shadow:9.3.1 and io.github.goooler.shadow:shadow-gradle-plugin:9.3.1 declares a runtime of a component, and its dependencies declared externally: error 09-Feb-2026 18:11:45 - Incompatible because this component declares documentation and the consumer needed a library error 09-Feb-2026 18:11:45 - Other compatible attributes: error 09-Feb-2026 18:11:45 - Doesn't say anything about its target Java version (required compatibility with Java 11) error 09-Feb-2026 18:11:45 - Doesn't say anything about its elements (required them packaged as a jar) error 09-Feb-2026 18:11:45 - Doesn't say anything about org.gradle.plugin.api-version (required '7.4.2') error 09-Feb-2026 18:11:45 - Variant 'runtimeElements' capabilities com.github.jengelman.gradle.plugins:shadow:9.3.1 and com.github.johnrengelman:shadow:9.3.1 and com.gradleup.shadow:shadow-gradle-plugin:9.3.1 and gradle.plugin.com.github.jengelman.gradle.plugins:shadow:9.3.1 and gradle.plugin.com.github.johnrengelman:shadow:9.3.1 and io.github.goooler.shadow:shadow-gradle-plugin:9.3.1 declares a runtime of a library, packaged as a jar, and its dependencies declared externally: error 09-Feb-2026 18:11:45 - Incompatible because this component declares a component compatible with Java 17 and the consumer needed a component compatible with Java 11 error 09-Feb-2026 18:11:45 - Other compatible attribute: error 09-Feb-2026 18:11:45 - Doesn't say anything about org.gradle.plugin.api-version (required '7.4.2') error 09-Feb-2026 18:11:45 - Variant 'sourcesElements' capabilities com.github.jengelman.gradle.plugins:shadow:9.3.1 and com.github.johnrengelman:shadow:9.3.1 and com.gradleup.shadow:shadow-gradle-plugin:9.3.1 and gradle.plugin.com.github.jengelman.gradle.plugins:shadow:9.3.1 and gradle.plugin.com.github.johnrengelman:shadow:9.3.1 and io.github.goooler.shadow:shadow-gradle-plugin:9.3.1 declares a runtime of a component, and its dependencies declared externally: error 09-Feb-2026 18:11:45 - Incompatible because this component declares documentation and the consumer needed a library error 09-Feb-2026 18:11:45 - Other compatible attributes: error 09-Feb-2026 18:11:45 - Doesn't say anything about its target Java version (required compatibility with Java 11) error 09-Feb-2026 18:11:45 - Doesn't say anything about its elements (required them packaged as a jar) error 09-Feb-2026 18:11:45 - Doesn't say anything about org.gradle.plugin.api-version (required '7.4.2') error 09-Feb-2026 18:11:45 error 09-Feb-2026 18:11:45 * Try: error 09-Feb-2026 18:11:45 > Run with --stacktrace option to get the stack trace. error 09-Feb-2026 18:11:45 > Run with --info or --debug option to get more log output. error 09-Feb-2026 18:11:45 > Run with --scan to get full insights. error 09-Feb-2026 18:11:45 error 09-Feb-2026 18:11:45 * Get more help at https://help.gradle.org error 09-Feb-2026 18:11:45 error 09-Feb-2026 18:11:45 BUILD FAILED in 3s simple 09-Feb-2026 18:11:45 simple 09-Feb-2026 18:11:45 Failing task since return code of [/home/bamboo/buildtools/x11-gradle/bin/gradle --no-daemon -Pclover=true -PJAVA_VERSION=11 cloverReport] was 1 while expected 0 simple 09-Feb-2026 18:11:45 Finished task 'Clover Report' with result: Failed simple 09-Feb-2026 18:11:45 Starting task 'TestNG Parser' of type 'com.atlassian.bamboo.plugins.testresultparser:task.testresultparser.testng' simple 09-Feb-2026 18:11:45 Parsing test results under /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB745-JOB1... simple 09-Feb-2026 18:11:45 Failing task since test cases were expected but none were found. simple 09-Feb-2026 18:11:45 Finished task 'TestNG Parser' with result: Failed simple 09-Feb-2026 18:11:45 Running post build plugin 'NCover Results Collector' simple 09-Feb-2026 18:11:45 Running post build plugin 'Artifact Copier' simple 09-Feb-2026 18:11:45 Publishing an artifact: Clover Report (System) error 09-Feb-2026 18:11:45 Unable to publish artifact [Clover Report (System)]: the source directory /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB745-JOB1/build/reports/clover does not exist. simple 09-Feb-2026 18:11:45 The artifact hasn't been successfully published after 3.178 ms simple 09-Feb-2026 18:11:45 Publishing an artifact: TestNG report error 09-Feb-2026 18:11:45 Unable to publish artifact [TestNG report]: the source directory /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB745-JOB1/build/reports/tests/test does not exist. simple 09-Feb-2026 18:11:45 The artifact hasn't been successfully published after 69.79 μs simple 09-Feb-2026 18:11:45 Running post build plugin 'Artifactory Release Management Staging' simple 09-Feb-2026 18:11:45 Running post build plugin 'Artifactory Build Info Copier' simple 09-Feb-2026 18:11:45 Running post build plugin 'Artifactory Gradle Properties Info Copier' simple 09-Feb-2026 18:11:45 Running post build plugin 'npm Cache Cleanup' simple 09-Feb-2026 18:11:45 Running post build plugin 'Clover Results Collector' error 09-Feb-2026 18:11:45 Failed to execute plugin 'Clover Results Collector' with error: No file matches the specified pattern:build/reports/clover/clover.xml in [/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB745-JOB1] simple 09-Feb-2026 18:11:45 Running post build plugin 'Docker Container Cleanup' simple 09-Feb-2026 18:11:45 Finalising the build... simple 09-Feb-2026 18:11:45 Stopping timer. simple 09-Feb-2026 18:11:45 Build JB-GDB745-JOB1-2 completed. simple 09-Feb-2026 18:11:45 Running on server: post build plugin 'NCover Results Collector' simple 09-Feb-2026 18:11:45 Running on server: post build plugin 'Build Hanging Detection Configuration' simple 09-Feb-2026 18:11:45 Running on server: post build plugin 'Clover Delta Calculator' simple 09-Feb-2026 18:11:45 Running on server: post build plugin 'Maven Dependencies Postprocessor' simple 09-Feb-2026 18:11:45 All post build plugins have finished simple 09-Feb-2026 18:11:45 Generating build results summary... simple 09-Feb-2026 18:11:45 Saving build results to disk... simple 09-Feb-2026 18:11:45 Logging substituted variables... simple 09-Feb-2026 18:11:45 Indexing build results... simple 09-Feb-2026 18:11:45 Finished building JB-GDB745-JOB1-2.