Project Clover database Wed Feb 4 2026 17:46:51 GMT

Package jalview.analysis.scoremodels

Branches:

224

Statements:

447

Methods:

92

Classes:

9

Files:

9

LOC:

2,198

NCLOC:

1,219

Total complexity:

233

Complexity density:

0.52

Statements/Method:

4.86

Methods/Class:

10.22

Average method complexity:

2.53

Package	Files	Average Method Complexity	TOTAL Coverage
jalview.analysis.scoremodels jalview.analysis.scoremodels	9.0 9	2.5326087 2.53	0.7798165 0.779816578%

Class	Methods	Average Method Complexity	TOTAL Coverage
DistanceScoreModel DistanceScoreModel	2.0 2	1.0 1	0.0 0.00%
SmithWatermanModel SmithWatermanModel	7.0 7	1.5714285 1.57	0.0 0.00%
SimilarityParams SimilarityParams	11.0 11	2.0 2	0.27941176 0.2794117627.9%
SimilarityScoreModel SimilarityScoreModel	2.0 2	1.0 1	0.5 0.550%
PIDModel PIDModel	12.0 12	2.8333333 2.83	0.71028036 0.7102803671%
FeatureDistanceModel FeatureDistanceModel	10.0 10	2.5 2.5	0.88235295 0.8823529588.2%
SecondaryStructureDistanceModel SecondaryStructureDistanceModel	12.0 12	3.9166667 3.92	0.88271606 0.8827160688.3%
ScoreModels ScoreModels	11.0 11	1.4545455 1.45	0.9166667 0.916666791.7%
ScoreMatrix ScoreMatrix	25.0 25	2.96 2.96	0.962963 0.96296396.3%