Build: #3 failed
Job: Clover and Tests failed
Build log
The build generated 190 lines of output. Download or view full build log
| 22-Jan-2026 16:37:23 | Build Jalview Builds - Gradle Develop Build - epic-JAL-3907_jalview_running_under_java_17 - Clover and Tests #3 (JB-GDB743-JOB1-3) started building on agent Default Agent |
| 22-Jan-2026 16:37:23 | |
| 22-Jan-2026 16:37:23 | Build working directory is /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB743-JOB1 |
| 22-Jan-2026 16:37:23 | Executing build Jalview Builds - Gradle Develop Build - epic-JAL-3907_jalview_running_under_java_17 - Clover and Tests #3 (JB-GDB743-JOB1-3) |
| 22-Jan-2026 16:37:23 | Starting task 'Checkout Default Repository' of type 'com.atlassian.bamboo.plugins.vcs:task.vcs.checkout' |
| 22-Jan-2026 16:37:23 | Checking out into /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB743-JOB1 |
| 22-Jan-2026 16:37:23 | Updating source code to revision: 90178e707da026d53f6400984e2b389a916be5c6 |
| 22-Jan-2026 16:37:23 | Fetching 'refs/heads/epic/JAL-3907_jalview_running_under_java_17' from 'https://gitlab.jalview.org/jalview/jalview.git'. |
| 22-Jan-2026 16:37:23 | Checking out revision 90178e707da026d53f6400984e2b389a916be5c6. |
| 22-Jan-2026 16:37:23 | From file:///srv/bamboo/bamboo-home/xml-data/build-dir/_git-repositories-cache/62ce6c67e11163a982952b2962d6d7b0872110f0 |
| 22-Jan-2026 16:37:23 | b0aa69e..90178e7 epic/JAL-3907_jalview_running_under_java_17 -> origin/epic/JAL-3907_jalview_running_under_java_17 |
| 22-Jan-2026 16:37:23 | * [new branch] bug/JAL-4624_JAL-4623_Mul_SS_in_PCA -> origin/bug/JAL-4624_JAL-4623_Mul_SS_in_PCA |
| 22-Jan-2026 16:37:24 | Already on 'epic/JAL-3907_jalview_running_under_java_17' |
| 22-Jan-2026 16:37:24 | Your branch is behind 'origin/epic/JAL-3907_jalview_running_under_java_17' by 1 commit, and can be fast-forwarded. |
| 22-Jan-2026 16:37:24 | (use "git pull" to update your local branch) |
| 22-Jan-2026 16:37:24 | HEAD is now at 90178e7 JAL-4320 JAL-4646 Upgrading to gradle 8 stage. Add more consistency to install4j11 image locations. Move generated install4j file to build/tmp/install4j. |
| 22-Jan-2026 16:37:24 | Updated source code to revision: 90178e707da026d53f6400984e2b389a916be5c6 |
| 22-Jan-2026 16:37:24 | Finished task 'Checkout Default Repository' with result: Success |
| 22-Jan-2026 16:37:24 | Running pre-build action: VCS Version Collector |
| 22-Jan-2026 16:37:24 | Running pre-build action: Artifactory Release Staging |
| 22-Jan-2026 16:37:24 | Starting task 'Run tests with openclover under gradle' of type 'org.jfrog.bamboo.bamboo-artifactory-plugin:artifactoryGradleTask' |
| 22-Jan-2026 16:37:24 | Bamboo Artifactory Plugin version: 2.6.2 |
| 22-Jan-2026 16:37:24 | Beginning to execute external process for build 'Jalview Builds - Gradle Develop Build - epic-JAL-3907_jalview_running_under_java_17 - Clover and Tests #3 (JB-GDB743-JOB1-3)' ... running command line: /home/bamboo/buildtools/x11-gradle/bin/gradle -Pclover=true -PJAVA_VERSION=11 -Ptestng_excluded_groups=Not-bamboo clean cleanTest test ... in: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB743-JOB1 ... using extra environment variables: bamboo_planRepository_1_branch=epic/JAL-3907_jalview_running_under_java_17 bamboo_capability_system_builder_maven_Artifactory_Maven_3=/usr CATALINA_PID=/home/bamboo/latest/work/bamboo.pid bamboo_planRepository_1_branchDisplayName=epic/JAL-3907_jalview_running_under_java_17 bamboo_repository_revision_number=90178e707da026d53f6400984e2b389a916be5c6 bamboo_resultsUrl=https://builds.jalview.org/browse/JB-GDB743-JOB1-3 JAVA_OPTS=-Xms512m -Xmx1024m -Dbamboo.home=/srv/bamboo/bamboo-home -Djdk.tls.ephemeralDHKeySize=2048 bamboo_repository_48169007_revision_number=90178e707da026d53f6400984e2b389a916be5c6 bamboo_build_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB743-JOB1 bamboo_planRepository_1_name=Jalview Gitlab bamboo_buildKey=JB-GDB743-JOB1 bamboo_shortPlanName=epic-JAL-3907_jalview_running_under_java_17 bamboo_repository_48169007_name=Jalview Gitlab bamboo_planRepository_name=Jalview Gitlab bamboo_repository_48169007_git_username= LOGNAME=bamboo bamboo_buildNumber=3 PWD=/ bamboo_capability_system_builder_command_Eclipse_2019_09=/home/bamboo/buildtools/eclipse/jee-2019-09/eclipse/eclipse bamboo_shortJobName=Clover and Tests bamboo_buildResultsUrl=https://builds.jalview.org/browse/JB-GDB743-JOB1-3 bamboo_planRepository_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git SHELL=/bin/bash bamboo_agentId=196609 bamboo_planName=Jalview Builds - Gradle Develop Build - epic-JAL-3907_jalview_running_under_java_17 bamboo_shortPlanKey=GDB743 bamboo_shortJobKey=JOB1 bamboo_repository_48169007_previous_revision_number=b0aa69ee7c5172a33cf5e8446dafc892dd485917 bamboo_repository_48169007_git_branch=epic/JAL-3907_jalview_running_under_java_17 bamboo_capability_system_jdk_OpenJDK_11=/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk bamboo_repository_48169007_branch_name=epic/JAL-3907_jalview_running_under_java_17 bamboo_planRepository_revision=90178e707da026d53f6400984e2b389a916be5c6 bamboo_buildTimeStamp=2026-01-22T16:37:23.483Z bamboo_repository_previous_revision_number=b0aa69ee7c5172a33cf5e8446dafc892dd485917 bamboo_planRepository_previousRevision=b0aa69ee7c5172a33cf5e8446dafc892dd485917 bamboo_repository_git_branch=epic/JAL-3907_jalview_running_under_java_17 bamboo_buildResultKey=JB-GDB743-JOB1-3 bamboo_repository_branch_name=epic/JAL-3907_jalview_running_under_java_17 bamboo_buildPlanName=Jalview Builds - Gradle Develop Build - epic-JAL-3907_jalview_running_under_java_17 - Clover and Tests bamboo_capability_system_builder_ant_j11_Ant=/home/bamboo/buildtools/j11/ant-j11 bamboo_planRepository_1_revision=90178e707da026d53f6400984e2b389a916be5c6 SHLVL=1 bamboo_capability_system_builder_ant_x11_Ant=/home/bamboo/buildtools/x11-ant bamboo_repository_name=Jalview Gitlab JAVA_HOME=/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/ LANG=en_GB.UTF-8 bamboo_buildFailed=false bamboo_capability_system_jdk_OpenJDK_8=/home/bamboo/buildtools/jdk/jdk-8-linux-x64/jdk bamboo_planRepository_branch=epic/JAL-3907_jalview_running_under_java_17 bamboo_agentWorkingDirectory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609 bamboo_capability_system_git_executable=/bin/git bamboo_repository_git_username= bamboo_planRepository_1_previousRevision=b0aa69ee7c5172a33cf5e8446dafc892dd485917 bamboo_planRepository_branchDisplayName=epic/JAL-3907_jalview_running_under_java_17 bamboo_planRepository_1_type=gitv2 bamboo_planRepository_branchName=epic/JAL-3907_jalview_running_under_java_17 _=/usr/bin/java bamboo_capability_system_builder_ant_j11_x11_Ant=/home/bamboo/buildtools/j11/x11-ant-j11 bamboo_capability_system_builderivy_Ivy=/usr bamboo_plan_storageTag=plan-47972445 bamboo_capability_system_builder_gradle_Gradle=/home/bamboo/buildtools/gradle bamboo_hg_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_hg-repositories-cache bamboo_planRepository_1_username= bamboo_planRepository_type=gitv2 USER=bamboo bamboo_git_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_git-repositories-cache bamboo_repository_git_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git bamboo_capability_system_builder_ant_Ant=/usr/share/ant bamboo_capability_system_builder_mvn3_Maven_3=/usr/share/maven bamboo_tmp_directory=/srv/bamboo/bamboo-home/temp bamboo_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB743-JOB1 bamboo_planKey=JB-GDB743 bamboo_repository_48169007_git_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git bamboo_planRepository_1_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git bamboo_planRepository_username= HOME=/home/bamboo bamboo_planRepository_1_branchName=epic/JAL-3907_jalview_running_under_java_17 PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin |
| 22-Jan-2026 16:37:24 | 2414 |
| 22-Jan-2026 16:37:25 | Starting a Gradle Daemon (subsequent builds will be faster) |
| 22-Jan-2026 16:37:39 | |
| 22-Jan-2026 16:37:39 | FAILURE: Build failed with an exception. |
| 22-Jan-2026 16:37:39 | |
| 22-Jan-2026 16:37:39 | * What went wrong: |
| 22-Jan-2026 16:37:39 | A problem occurred configuring root project 'jalview'. |
| 22-Jan-2026 16:37:39 | > Could not resolve all files for configuration ':classpath'. |
| 22-Jan-2026 16:37:39 | > Could not resolve com.diffplug.spotless:spotless-plugin-gradle:8.1.0. |
| 22-Jan-2026 16:37:39 | Required by: |
| 22-Jan-2026 16:37:39 | project : > com.diffplug.spotless:com.diffplug.spotless.gradle.plugin:8.1.0 |
| 22-Jan-2026 16:37:39 | > No matching variant of com.diffplug.spotless:spotless-plugin-gradle:8.1.0 was found. The consumer was configured to find a runtime of a library compatible with Java 11, packaged as a jar, and its dependencies declared externally, as well as attribute 'org.gradle.plugin.api-version' with value '7.4.2' but: |
| 22-Jan-2026 16:37:39 | - Variant 'apiElements' capability com.diffplug.spotless:spotless-plugin-gradle:8.1.0 declares a library, packaged as a jar, and its dependencies declared externally: |
| 22-Jan-2026 16:37:39 | - Incompatible because this component declares an API of a component compatible with Java 17 and the consumer needed a runtime of a component compatible with Java 11 |
| 22-Jan-2026 16:37:39 | - Other compatible attribute: |
| 22-Jan-2026 16:37:39 | - Doesn't say anything about org.gradle.plugin.api-version (required '7.4.2') |
| 22-Jan-2026 16:37:39 | - Variant 'javadocElements' capability com.diffplug.spotless:spotless-plugin-gradle:8.1.0 declares a runtime of a component, and its dependencies declared externally: |
| 22-Jan-2026 16:37:39 | - Incompatible because this component declares documentation and the consumer needed a library |
| 22-Jan-2026 16:37:39 | - Other compatible attributes: |
| 22-Jan-2026 16:37:39 | - Doesn't say anything about its target Java version (required compatibility with Java 11) |
| 22-Jan-2026 16:37:39 | - Doesn't say anything about its elements (required them packaged as a jar) |
| 22-Jan-2026 16:37:39 | - Doesn't say anything about org.gradle.plugin.api-version (required '7.4.2') |
| 22-Jan-2026 16:37:39 | - Variant 'runtimeElements' capability com.diffplug.spotless:spotless-plugin-gradle:8.1.0 declares a runtime of a library, packaged as a jar, and its dependencies declared externally: |
| 22-Jan-2026 16:37:39 | - Incompatible because this component declares a component compatible with Java 17 and the consumer needed a component compatible with Java 11 |
| 22-Jan-2026 16:37:39 | - Other compatible attribute: |
| 22-Jan-2026 16:37:39 | - Doesn't say anything about org.gradle.plugin.api-version (required '7.4.2') |
| 22-Jan-2026 16:37:39 | - Variant 'sourcesElements' capability com.diffplug.spotless:spotless-plugin-gradle:8.1.0 declares a runtime of a component, and its dependencies declared externally: |
| 22-Jan-2026 16:37:39 | - Incompatible because this component declares documentation and the consumer needed a library |
| 22-Jan-2026 16:37:39 | - Other compatible attributes: |
| 22-Jan-2026 16:37:39 | - Doesn't say anything about its target Java version (required compatibility with Java 11) |
| 22-Jan-2026 16:37:39 | - Doesn't say anything about its elements (required them packaged as a jar) |
| 22-Jan-2026 16:37:39 | - Doesn't say anything about org.gradle.plugin.api-version (required '7.4.2') |
| 22-Jan-2026 16:37:39 | > Could not resolve com.gradleup.shadow:shadow-gradle-plugin:9.3.1. |
| 22-Jan-2026 16:37:39 | Required by: |
| 22-Jan-2026 16:37:39 | project : > com.gradleup.shadow:com.gradleup.shadow.gradle.plugin:9.3.1 |
| 22-Jan-2026 16:37:39 | > No matching variant of com.gradleup.shadow:shadow-gradle-plugin:9.3.1 was found. The consumer was configured to find a runtime of a library compatible with Java 11, packaged as a jar, and its dependencies declared externally, as well as attribute 'org.gradle.plugin.api-version' with value '7.4.2' but: |
| 22-Jan-2026 16:37:39 | - Variant 'apiElements' capabilities com.github.jengelman.gradle.plugins:shadow:9.3.1 and com.github.johnrengelman:shadow:9.3.1 and com.gradleup.shadow:shadow-gradle-plugin:9.3.1 and gradle.plugin.com.github.jengelman.gradle.plugins:shadow:9.3.1 and gradle.plugin.com.github.johnrengelman:shadow:9.3.1 and io.github.goooler.shadow:shadow-gradle-plugin:9.3.1 declares a library, packaged as a jar, and its dependencies declared externally: |
| 22-Jan-2026 16:37:39 | - Incompatible because this component declares an API of a component compatible with Java 17, as well as attribute 'org.gradle.plugin.api-version' with value '9.0.0' and the consumer needed a runtime of a component compatible with Java 11, as well as attribute 'org.gradle.plugin.api-version' with value '7.4.2' |
| 22-Jan-2026 16:37:39 | - Variant 'javadocElements' capabilities com.github.jengelman.gradle.plugins:shadow:9.3.1 and com.github.johnrengelman:shadow:9.3.1 and com.gradleup.shadow:shadow-gradle-plugin:9.3.1 and gradle.plugin.com.github.jengelman.gradle.plugins:shadow:9.3.1 and gradle.plugin.com.github.johnrengelman:shadow:9.3.1 and io.github.goooler.shadow:shadow-gradle-plugin:9.3.1 declares a runtime of a component, and its dependencies declared externally: |
| 22-Jan-2026 16:37:39 | - Incompatible because this component declares documentation and the consumer needed a library |
| 22-Jan-2026 16:37:39 | - Other compatible attributes: |
| 22-Jan-2026 16:37:39 | - Doesn't say anything about its target Java version (required compatibility with Java 11) |
| 22-Jan-2026 16:37:39 | - Doesn't say anything about its elements (required them packaged as a jar) |
| 22-Jan-2026 16:37:39 | - Doesn't say anything about org.gradle.plugin.api-version (required '7.4.2') |
| 22-Jan-2026 16:37:39 | - Variant 'runtimeElements' capabilities com.github.jengelman.gradle.plugins:shadow:9.3.1 and com.github.johnrengelman:shadow:9.3.1 and com.gradleup.shadow:shadow-gradle-plugin:9.3.1 and gradle.plugin.com.github.jengelman.gradle.plugins:shadow:9.3.1 and gradle.plugin.com.github.johnrengelman:shadow:9.3.1 and io.github.goooler.shadow:shadow-gradle-plugin:9.3.1 declares a runtime of a library, packaged as a jar, and its dependencies declared externally: |
| 22-Jan-2026 16:37:39 | - Incompatible because this component declares a component compatible with Java 17 and the consumer needed a component compatible with Java 11 |
| 22-Jan-2026 16:37:39 | - Other compatible attribute: |
| 22-Jan-2026 16:37:39 | - Doesn't say anything about org.gradle.plugin.api-version (required '7.4.2') |
| 22-Jan-2026 16:37:39 | - Variant 'sourcesElements' capabilities com.github.jengelman.gradle.plugins:shadow:9.3.1 and com.github.johnrengelman:shadow:9.3.1 and com.gradleup.shadow:shadow-gradle-plugin:9.3.1 and gradle.plugin.com.github.jengelman.gradle.plugins:shadow:9.3.1 and gradle.plugin.com.github.johnrengelman:shadow:9.3.1 and io.github.goooler.shadow:shadow-gradle-plugin:9.3.1 declares a runtime of a component, and its dependencies declared externally: |
| 22-Jan-2026 16:37:39 | - Incompatible because this component declares documentation and the consumer needed a library |
| 22-Jan-2026 16:37:39 | - Other compatible attributes: |
| 22-Jan-2026 16:37:39 | - Doesn't say anything about its target Java version (required compatibility with Java 11) |
| 22-Jan-2026 16:37:39 | - Doesn't say anything about its elements (required them packaged as a jar) |
| 22-Jan-2026 16:37:39 | - Doesn't say anything about org.gradle.plugin.api-version (required '7.4.2') |
| 22-Jan-2026 16:37:39 | |
| 22-Jan-2026 16:37:39 | * Try: |
| 22-Jan-2026 16:37:39 | > Run with --stacktrace option to get the stack trace. |
| 22-Jan-2026 16:37:39 | > Run with --info or --debug option to get more log output. |
| 22-Jan-2026 16:37:39 | > Run with --scan to get full insights. |
| 22-Jan-2026 16:37:39 | |
| 22-Jan-2026 16:37:39 | * Get more help at https://help.gradle.org |
| 22-Jan-2026 16:37:39 | |
| 22-Jan-2026 16:37:39 | BUILD FAILED in 15s |
| 22-Jan-2026 16:37:40 | |
| 22-Jan-2026 16:37:40 | Failing task since return code of [/home/bamboo/buildtools/x11-gradle/bin/gradle -Pclover=true -PJAVA_VERSION=11 -Ptestng_excluded_groups=Not-bamboo clean cleanTest test] was 1 while expected 0 |
| 22-Jan-2026 16:37:40 | Finished task 'Run tests with openclover under gradle' with result: Failed |
| 22-Jan-2026 16:37:40 | Starting task 'Clover Report' of type 'org.jfrog.bamboo.bamboo-artifactory-plugin:artifactoryGradleTask' |
| 22-Jan-2026 16:37:40 | Bamboo Artifactory Plugin version: 2.6.2 |
| 22-Jan-2026 16:37:40 | Beginning to execute external process for build 'Jalview Builds - Gradle Develop Build - epic-JAL-3907_jalview_running_under_java_17 - Clover and Tests #3 (JB-GDB743-JOB1-3)' ... running command line: /home/bamboo/buildtools/x11-gradle/bin/gradle --no-daemon -Pclover=true -PJAVA_VERSION=11 cloverReport ... in: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB743-JOB1 ... using extra environment variables: bamboo_planRepository_1_branch=epic/JAL-3907_jalview_running_under_java_17 bamboo_capability_system_builder_maven_Artifactory_Maven_3=/usr CATALINA_PID=/home/bamboo/latest/work/bamboo.pid bamboo_planRepository_1_branchDisplayName=epic/JAL-3907_jalview_running_under_java_17 bamboo_repository_revision_number=90178e707da026d53f6400984e2b389a916be5c6 bamboo_resultsUrl=https://builds.jalview.org/browse/JB-GDB743-JOB1-3 JAVA_OPTS=-Xms512m -Xmx1024m -Dbamboo.home=/srv/bamboo/bamboo-home -Djdk.tls.ephemeralDHKeySize=2048 bamboo_repository_48169007_revision_number=90178e707da026d53f6400984e2b389a916be5c6 bamboo_build_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB743-JOB1 bamboo_planRepository_1_name=Jalview Gitlab bamboo_buildKey=JB-GDB743-JOB1 bamboo_shortPlanName=epic-JAL-3907_jalview_running_under_java_17 bamboo_repository_48169007_name=Jalview Gitlab bamboo_planRepository_name=Jalview Gitlab bamboo_repository_48169007_git_username= LOGNAME=bamboo bamboo_buildNumber=3 PWD=/ bamboo_capability_system_builder_command_Eclipse_2019_09=/home/bamboo/buildtools/eclipse/jee-2019-09/eclipse/eclipse bamboo_shortJobName=Clover and Tests bamboo_buildResultsUrl=https://builds.jalview.org/browse/JB-GDB743-JOB1-3 bamboo_planRepository_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git SHELL=/bin/bash bamboo_agentId=196609 bamboo_planName=Jalview Builds - Gradle Develop Build - epic-JAL-3907_jalview_running_under_java_17 bamboo_shortPlanKey=GDB743 bamboo_shortJobKey=JOB1 bamboo_repository_48169007_previous_revision_number=b0aa69ee7c5172a33cf5e8446dafc892dd485917 bamboo_repository_48169007_git_branch=epic/JAL-3907_jalview_running_under_java_17 bamboo_capability_system_jdk_OpenJDK_11=/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk bamboo_repository_48169007_branch_name=epic/JAL-3907_jalview_running_under_java_17 bamboo_planRepository_revision=90178e707da026d53f6400984e2b389a916be5c6 bamboo_buildTimeStamp=2026-01-22T16:37:23.483Z bamboo_repository_previous_revision_number=b0aa69ee7c5172a33cf5e8446dafc892dd485917 bamboo_planRepository_previousRevision=b0aa69ee7c5172a33cf5e8446dafc892dd485917 bamboo_repository_git_branch=epic/JAL-3907_jalview_running_under_java_17 bamboo_buildResultKey=JB-GDB743-JOB1-3 bamboo_repository_branch_name=epic/JAL-3907_jalview_running_under_java_17 bamboo_buildPlanName=Jalview Builds - Gradle Develop Build - epic-JAL-3907_jalview_running_under_java_17 - Clover and Tests bamboo_capability_system_builder_ant_j11_Ant=/home/bamboo/buildtools/j11/ant-j11 bamboo_planRepository_1_revision=90178e707da026d53f6400984e2b389a916be5c6 SHLVL=1 bamboo_capability_system_builder_ant_x11_Ant=/home/bamboo/buildtools/x11-ant bamboo_repository_name=Jalview Gitlab bamboo_build_commandline_org_jfrog_bamboo_bamboo_artifactory_plugin_artifactoryGradleTask_2=/home/bamboo/buildtools/x11-gradle/bin/gradle -Pclover=true -PJAVA_VERSION=11 -Ptestng_excluded_groups=Not-bamboo clean cleanTest test JAVA_HOME=/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/ LANG=en_GB.UTF-8 bamboo_buildFailed=true bamboo_capability_system_jdk_OpenJDK_8=/home/bamboo/buildtools/jdk/jdk-8-linux-x64/jdk bamboo_planRepository_branch=epic/JAL-3907_jalview_running_under_java_17 bamboo_agentWorkingDirectory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609 bamboo_jobFailed=true bamboo_capability_system_git_executable=/bin/git bamboo_repository_git_username= bamboo_planRepository_1_previousRevision=b0aa69ee7c5172a33cf5e8446dafc892dd485917 bamboo_planRepository_branchDisplayName=epic/JAL-3907_jalview_running_under_java_17 bamboo_planRepository_1_type=gitv2 bamboo_planRepository_branchName=epic/JAL-3907_jalview_running_under_java_17 _=/usr/bin/java bamboo_capability_system_builder_ant_j11_x11_Ant=/home/bamboo/buildtools/j11/x11-ant-j11 bamboo_capability_system_builderivy_Ivy=/usr bamboo_plan_storageTag=plan-47972445 bamboo_capability_system_builder_gradle_Gradle=/home/bamboo/buildtools/gradle bamboo_hg_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_hg-repositories-cache bamboo_planRepository_1_username= bamboo_planRepository_type=gitv2 USER=bamboo bamboo_git_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_git-repositories-cache bamboo_repository_git_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git bamboo_capability_system_builder_ant_Ant=/usr/share/ant bamboo_capability_system_builder_mvn3_Maven_3=/usr/share/maven bamboo_tmp_directory=/srv/bamboo/bamboo-home/temp bamboo_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB743-JOB1 bamboo_planKey=JB-GDB743 bamboo_repository_48169007_git_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git bamboo_planRepository_1_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git bamboo_planRepository_username= HOME=/home/bamboo bamboo_planRepository_1_branchName=epic/JAL-3907_jalview_running_under_java_17 PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin |
| 22-Jan-2026 16:37:40 | 2414 |
| 22-Jan-2026 16:37:43 | |
| 22-Jan-2026 16:37:43 | FAILURE: Build failed with an exception. |
| 22-Jan-2026 16:37:43 | |
| 22-Jan-2026 16:37:43 | * What went wrong: |
| 22-Jan-2026 16:37:43 | A problem occurred configuring root project 'jalview'. |
| 22-Jan-2026 16:37:43 | > Could not resolve all files for configuration ':classpath'. |
| 22-Jan-2026 16:37:43 | > Could not resolve com.diffplug.spotless:spotless-plugin-gradle:8.1.0. |
| 22-Jan-2026 16:37:43 | Required by: |
| 22-Jan-2026 16:37:43 | project : > com.diffplug.spotless:com.diffplug.spotless.gradle.plugin:8.1.0 |
| 22-Jan-2026 16:37:43 | > No matching variant of com.diffplug.spotless:spotless-plugin-gradle:8.1.0 was found. The consumer was configured to find a runtime of a library compatible with Java 11, packaged as a jar, and its dependencies declared externally, as well as attribute 'org.gradle.plugin.api-version' with value '7.4.2' but: |
| 22-Jan-2026 16:37:43 | - Variant 'apiElements' capability com.diffplug.spotless:spotless-plugin-gradle:8.1.0 declares a library, packaged as a jar, and its dependencies declared externally: |
| 22-Jan-2026 16:37:43 | - Incompatible because this component declares an API of a component compatible with Java 17 and the consumer needed a runtime of a component compatible with Java 11 |
| 22-Jan-2026 16:37:43 | - Other compatible attribute: |
| 22-Jan-2026 16:37:43 | - Doesn't say anything about org.gradle.plugin.api-version (required '7.4.2') |
| 22-Jan-2026 16:37:43 | - Variant 'javadocElements' capability com.diffplug.spotless:spotless-plugin-gradle:8.1.0 declares a runtime of a component, and its dependencies declared externally: |
| 22-Jan-2026 16:37:43 | - Incompatible because this component declares documentation and the consumer needed a library |
| 22-Jan-2026 16:37:43 | - Other compatible attributes: |
| 22-Jan-2026 16:37:43 | - Doesn't say anything about its target Java version (required compatibility with Java 11) |
| 22-Jan-2026 16:37:43 | - Doesn't say anything about its elements (required them packaged as a jar) |
| 22-Jan-2026 16:37:43 | - Doesn't say anything about org.gradle.plugin.api-version (required '7.4.2') |
| 22-Jan-2026 16:37:43 | - Variant 'runtimeElements' capability com.diffplug.spotless:spotless-plugin-gradle:8.1.0 declares a runtime of a library, packaged as a jar, and its dependencies declared externally: |
| 22-Jan-2026 16:37:43 | - Incompatible because this component declares a component compatible with Java 17 and the consumer needed a component compatible with Java 11 |
| 22-Jan-2026 16:37:43 | - Other compatible attribute: |
| 22-Jan-2026 16:37:43 | - Doesn't say anything about org.gradle.plugin.api-version (required '7.4.2') |
| 22-Jan-2026 16:37:43 | - Variant 'sourcesElements' capability com.diffplug.spotless:spotless-plugin-gradle:8.1.0 declares a runtime of a component, and its dependencies declared externally: |
| 22-Jan-2026 16:37:43 | - Incompatible because this component declares documentation and the consumer needed a library |
| 22-Jan-2026 16:37:43 | - Other compatible attributes: |
| 22-Jan-2026 16:37:43 | - Doesn't say anything about its target Java version (required compatibility with Java 11) |
| 22-Jan-2026 16:37:43 | - Doesn't say anything about its elements (required them packaged as a jar) |
| 22-Jan-2026 16:37:43 | - Doesn't say anything about org.gradle.plugin.api-version (required '7.4.2') |
| 22-Jan-2026 16:37:43 | > Could not resolve com.gradleup.shadow:shadow-gradle-plugin:9.3.1. |
| 22-Jan-2026 16:37:43 | Required by: |
| 22-Jan-2026 16:37:43 | project : > com.gradleup.shadow:com.gradleup.shadow.gradle.plugin:9.3.1 |
| 22-Jan-2026 16:37:43 | > No matching variant of com.gradleup.shadow:shadow-gradle-plugin:9.3.1 was found. The consumer was configured to find a runtime of a library compatible with Java 11, packaged as a jar, and its dependencies declared externally, as well as attribute 'org.gradle.plugin.api-version' with value '7.4.2' but: |
| 22-Jan-2026 16:37:43 | - Variant 'apiElements' capabilities com.github.jengelman.gradle.plugins:shadow:9.3.1 and com.github.johnrengelman:shadow:9.3.1 and com.gradleup.shadow:shadow-gradle-plugin:9.3.1 and gradle.plugin.com.github.jengelman.gradle.plugins:shadow:9.3.1 and gradle.plugin.com.github.johnrengelman:shadow:9.3.1 and io.github.goooler.shadow:shadow-gradle-plugin:9.3.1 declares a library, packaged as a jar, and its dependencies declared externally: |
| 22-Jan-2026 16:37:43 | - Incompatible because this component declares an API of a component compatible with Java 17, as well as attribute 'org.gradle.plugin.api-version' with value '9.0.0' and the consumer needed a runtime of a component compatible with Java 11, as well as attribute 'org.gradle.plugin.api-version' with value '7.4.2' |
| 22-Jan-2026 16:37:43 | - Variant 'javadocElements' capabilities com.github.jengelman.gradle.plugins:shadow:9.3.1 and com.github.johnrengelman:shadow:9.3.1 and com.gradleup.shadow:shadow-gradle-plugin:9.3.1 and gradle.plugin.com.github.jengelman.gradle.plugins:shadow:9.3.1 and gradle.plugin.com.github.johnrengelman:shadow:9.3.1 and io.github.goooler.shadow:shadow-gradle-plugin:9.3.1 declares a runtime of a component, and its dependencies declared externally: |
| 22-Jan-2026 16:37:43 | - Incompatible because this component declares documentation and the consumer needed a library |
| 22-Jan-2026 16:37:43 | - Other compatible attributes: |
| 22-Jan-2026 16:37:43 | - Doesn't say anything about its target Java version (required compatibility with Java 11) |
| 22-Jan-2026 16:37:43 | - Doesn't say anything about its elements (required them packaged as a jar) |
| 22-Jan-2026 16:37:43 | - Doesn't say anything about org.gradle.plugin.api-version (required '7.4.2') |
| 22-Jan-2026 16:37:43 | - Variant 'runtimeElements' capabilities com.github.jengelman.gradle.plugins:shadow:9.3.1 and com.github.johnrengelman:shadow:9.3.1 and com.gradleup.shadow:shadow-gradle-plugin:9.3.1 and gradle.plugin.com.github.jengelman.gradle.plugins:shadow:9.3.1 and gradle.plugin.com.github.johnrengelman:shadow:9.3.1 and io.github.goooler.shadow:shadow-gradle-plugin:9.3.1 declares a runtime of a library, packaged as a jar, and its dependencies declared externally: |
| 22-Jan-2026 16:37:43 | - Incompatible because this component declares a component compatible with Java 17 and the consumer needed a component compatible with Java 11 |
| 22-Jan-2026 16:37:43 | - Other compatible attribute: |
| 22-Jan-2026 16:37:43 | - Doesn't say anything about org.gradle.plugin.api-version (required '7.4.2') |
| 22-Jan-2026 16:37:43 | - Variant 'sourcesElements' capabilities com.github.jengelman.gradle.plugins:shadow:9.3.1 and com.github.johnrengelman:shadow:9.3.1 and com.gradleup.shadow:shadow-gradle-plugin:9.3.1 and gradle.plugin.com.github.jengelman.gradle.plugins:shadow:9.3.1 and gradle.plugin.com.github.johnrengelman:shadow:9.3.1 and io.github.goooler.shadow:shadow-gradle-plugin:9.3.1 declares a runtime of a component, and its dependencies declared externally: |
| 22-Jan-2026 16:37:43 | - Incompatible because this component declares documentation and the consumer needed a library |
| 22-Jan-2026 16:37:43 | - Other compatible attributes: |
| 22-Jan-2026 16:37:43 | - Doesn't say anything about its target Java version (required compatibility with Java 11) |
| 22-Jan-2026 16:37:43 | - Doesn't say anything about its elements (required them packaged as a jar) |
| 22-Jan-2026 16:37:43 | - Doesn't say anything about org.gradle.plugin.api-version (required '7.4.2') |
| 22-Jan-2026 16:37:43 | |
| 22-Jan-2026 16:37:43 | * Try: |
| 22-Jan-2026 16:37:43 | > Run with --stacktrace option to get the stack trace. |
| 22-Jan-2026 16:37:43 | > Run with --info or --debug option to get more log output. |
| 22-Jan-2026 16:37:43 | > Run with --scan to get full insights. |
| 22-Jan-2026 16:37:43 | |
| 22-Jan-2026 16:37:43 | * Get more help at https://help.gradle.org |
| 22-Jan-2026 16:37:43 | |
| 22-Jan-2026 16:37:43 | BUILD FAILED in 3s |
| 22-Jan-2026 16:37:43 | |
| 22-Jan-2026 16:37:43 | Failing task since return code of [/home/bamboo/buildtools/x11-gradle/bin/gradle --no-daemon -Pclover=true -PJAVA_VERSION=11 cloverReport] was 1 while expected 0 |
| 22-Jan-2026 16:37:43 | Finished task 'Clover Report' with result: Failed |
| 22-Jan-2026 16:37:43 | Starting task 'TestNG Parser' of type 'com.atlassian.bamboo.plugins.testresultparser:task.testresultparser.testng' |
| 22-Jan-2026 16:37:43 | Parsing test results under /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB743-JOB1... |
| 22-Jan-2026 16:37:43 | File /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB743-JOB1/build/reports/tests/testTask0/testng-results.xml was ignored because it was modified (2026-01-15 16:16:16.000) before task started (2026-01-22 16:37:23.546) |
| 22-Jan-2026 16:37:43 | File /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB743-JOB1/build/reports/tests/testTask1/testng-results.xml was ignored because it was modified (2026-01-15 16:18:24.000) before task started (2026-01-22 16:37:23.546) |
| 22-Jan-2026 16:37:43 | File /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB743-JOB1/build/reports/tests/testTask2/testng-results.xml was ignored because it was modified (2026-01-15 16:18:29.000) before task started (2026-01-22 16:37:23.546) |
| 22-Jan-2026 16:37:43 | Failing task since test cases were expected but none were found. |
| 22-Jan-2026 16:37:43 | Finished task 'TestNG Parser' with result: Failed |
| 22-Jan-2026 16:37:43 | Running post build plugin 'NCover Results Collector' |
| 22-Jan-2026 16:37:43 | Running post build plugin 'Artifact Copier' |
| 22-Jan-2026 16:37:43 | Publishing an artifact: Clover Report (System) |
| 22-Jan-2026 16:37:50 | Finished publishing of artifact Job artifact: [Clover Report (System)], pattern: [**/*.*] anchored at: [build/reports/clover] in 6.946 s |
| 22-Jan-2026 16:37:50 | Publishing an artifact: TestNG report |
| 22-Jan-2026 16:37:50 | Unable to publish artifact [TestNG report]: the source directory /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB743-JOB1/build/reports/tests/test does not exist. |
| 22-Jan-2026 16:37:50 | The artifact hasn't been successfully published after 1.710 ms |
| 22-Jan-2026 16:37:50 | Running post build plugin 'Artifactory Release Management Staging' |
| 22-Jan-2026 16:37:50 | Running post build plugin 'Artifactory Build Info Copier' |
| 22-Jan-2026 16:37:50 | Running post build plugin 'Artifactory Gradle Properties Info Copier' |
| 22-Jan-2026 16:37:50 | Running post build plugin 'npm Cache Cleanup' |
| 22-Jan-2026 16:37:50 | Running post build plugin 'Clover Results Collector' |
| 22-Jan-2026 16:37:50 | Running post build plugin 'Docker Container Cleanup' |
| 22-Jan-2026 16:37:50 | Finalising the build... |
| 22-Jan-2026 16:37:50 | Stopping timer. |
| 22-Jan-2026 16:37:50 | Build JB-GDB743-JOB1-3 completed. |
| 22-Jan-2026 16:37:50 | Running on server: post build plugin 'NCover Results Collector' |
| 22-Jan-2026 16:37:50 | Running on server: post build plugin 'Build Hanging Detection Configuration' |
| 22-Jan-2026 16:37:50 | Running on server: post build plugin 'Clover Delta Calculator' |
| 22-Jan-2026 16:37:50 | Running on server: post build plugin 'Maven Dependencies Postprocessor' |
| 22-Jan-2026 16:37:50 | All post build plugins have finished |
| 22-Jan-2026 16:37:50 | Generating build results summary... |
| 22-Jan-2026 16:37:50 | Saving build results to disk... |
| 22-Jan-2026 16:37:50 | Logging substituted variables... |
| 22-Jan-2026 16:37:50 | Indexing build results... |
| 22-Jan-2026 16:37:50 | Finished building JB-GDB743-JOB1-3. |