simple 22-Jan-2026 16:37:23 Build Jalview Builds - Gradle Develop Build - epic-JAL-3907_jalview_running_under_java_17 - Clover and Tests #3 (JB-GDB743-JOB1-3) started building on agent Default Agent simple 22-Jan-2026 16:37:23 simple 22-Jan-2026 16:37:23 Build working directory is /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB743-JOB1 simple 22-Jan-2026 16:37:23 Executing build Jalview Builds - Gradle Develop Build - epic-JAL-3907_jalview_running_under_java_17 - Clover and Tests #3 (JB-GDB743-JOB1-3) simple 22-Jan-2026 16:37:23 Starting task 'Checkout Default Repository' of type 'com.atlassian.bamboo.plugins.vcs:task.vcs.checkout' simple 22-Jan-2026 16:37:23 Checking out into /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB743-JOB1 simple 22-Jan-2026 16:37:23 Updating source code to revision: 90178e707da026d53f6400984e2b389a916be5c6 simple 22-Jan-2026 16:37:23 Fetching 'refs/heads/epic/JAL-3907_jalview_running_under_java_17' from 'https://gitlab.jalview.org/jalview/jalview.git'. simple 22-Jan-2026 16:37:23 Checking out revision 90178e707da026d53f6400984e2b389a916be5c6. simple 22-Jan-2026 16:37:23 From file:///srv/bamboo/bamboo-home/xml-data/build-dir/_git-repositories-cache/62ce6c67e11163a982952b2962d6d7b0872110f0 simple 22-Jan-2026 16:37:23 b0aa69e..90178e7 epic/JAL-3907_jalview_running_under_java_17 -> origin/epic/JAL-3907_jalview_running_under_java_17 simple 22-Jan-2026 16:37:23 * [new branch] bug/JAL-4624_JAL-4623_Mul_SS_in_PCA -> origin/bug/JAL-4624_JAL-4623_Mul_SS_in_PCA simple 22-Jan-2026 16:37:24 Already on 'epic/JAL-3907_jalview_running_under_java_17' simple 22-Jan-2026 16:37:24 Your branch is behind 'origin/epic/JAL-3907_jalview_running_under_java_17' by 1 commit, and can be fast-forwarded. simple 22-Jan-2026 16:37:24 (use "git pull" to update your local branch) simple 22-Jan-2026 16:37:24 HEAD is now at 90178e7 JAL-4320 JAL-4646 Upgrading to gradle 8 stage. Add more consistency to install4j11 image locations. Move generated install4j file to build/tmp/install4j. simple 22-Jan-2026 16:37:24 Updated source code to revision: 90178e707da026d53f6400984e2b389a916be5c6 simple 22-Jan-2026 16:37:24 Finished task 'Checkout Default Repository' with result: Success simple 22-Jan-2026 16:37:24 Running pre-build action: VCS Version Collector simple 22-Jan-2026 16:37:24 Running pre-build action: Artifactory Release Staging simple 22-Jan-2026 16:37:24 Starting task 'Run tests with openclover under gradle' of type 'org.jfrog.bamboo.bamboo-artifactory-plugin:artifactoryGradleTask' simple 22-Jan-2026 16:37:24 Bamboo Artifactory Plugin version: 2.6.2 command 22-Jan-2026 16:37:24 Beginning to execute external process for build 'Jalview Builds - Gradle Develop Build - epic-JAL-3907_jalview_running_under_java_17 - Clover and Tests #3 (JB-GDB743-JOB1-3)'\n ... running command line: \n/home/bamboo/buildtools/x11-gradle/bin/gradle -Pclover=true -PJAVA_VERSION=11 -Ptestng_excluded_groups=Not-bamboo clean cleanTest test\n ... in: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB743-JOB1\n ... using extra environment variables: \nbamboo_planRepository_1_branch=epic/JAL-3907_jalview_running_under_java_17\nbamboo_capability_system_builder_maven_Artifactory_Maven_3=/usr\nCATALINA_PID=/home/bamboo/latest/work/bamboo.pid\nbamboo_planRepository_1_branchDisplayName=epic/JAL-3907_jalview_running_under_java_17\nbamboo_repository_revision_number=90178e707da026d53f6400984e2b389a916be5c6\nbamboo_resultsUrl=https://builds.jalview.org/browse/JB-GDB743-JOB1-3\nJAVA_OPTS=-Xms512m -Xmx1024m -Dbamboo.home=/srv/bamboo/bamboo-home -Djdk.tls.ephemeralDHKeySize=2048\nbamboo_repository_48169007_revision_number=90178e707da026d53f6400984e2b389a916be5c6\nbamboo_build_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB743-JOB1\nbamboo_planRepository_1_name=Jalview Gitlab\nbamboo_buildKey=JB-GDB743-JOB1\nbamboo_shortPlanName=epic-JAL-3907_jalview_running_under_java_17\nbamboo_repository_48169007_name=Jalview Gitlab\nbamboo_planRepository_name=Jalview Gitlab\nbamboo_repository_48169007_git_username=\nLOGNAME=bamboo\nbamboo_buildNumber=3\nPWD=/\nbamboo_capability_system_builder_command_Eclipse_2019_09=/home/bamboo/buildtools/eclipse/jee-2019-09/eclipse/eclipse\nbamboo_shortJobName=Clover and Tests\nbamboo_buildResultsUrl=https://builds.jalview.org/browse/JB-GDB743-JOB1-3\nbamboo_planRepository_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git\nSHELL=/bin/bash\nbamboo_agentId=196609\nbamboo_planName=Jalview Builds - Gradle Develop Build - epic-JAL-3907_jalview_running_under_java_17\nbamboo_shortPlanKey=GDB743\nbamboo_shortJobKey=JOB1\nbamboo_repository_48169007_previous_revision_number=b0aa69ee7c5172a33cf5e8446dafc892dd485917\nbamboo_repository_48169007_git_branch=epic/JAL-3907_jalview_running_under_java_17\nbamboo_capability_system_jdk_OpenJDK_11=/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk\nbamboo_repository_48169007_branch_name=epic/JAL-3907_jalview_running_under_java_17\nbamboo_planRepository_revision=90178e707da026d53f6400984e2b389a916be5c6\nbamboo_buildTimeStamp=2026-01-22T16:37:23.483Z\nbamboo_repository_previous_revision_number=b0aa69ee7c5172a33cf5e8446dafc892dd485917\nbamboo_planRepository_previousRevision=b0aa69ee7c5172a33cf5e8446dafc892dd485917\nbamboo_repository_git_branch=epic/JAL-3907_jalview_running_under_java_17\nbamboo_buildResultKey=JB-GDB743-JOB1-3\nbamboo_repository_branch_name=epic/JAL-3907_jalview_running_under_java_17\nbamboo_buildPlanName=Jalview Builds - Gradle Develop Build - epic-JAL-3907_jalview_running_under_java_17 - Clover and Tests\nbamboo_capability_system_builder_ant_j11_Ant=/home/bamboo/buildtools/j11/ant-j11\nbamboo_planRepository_1_revision=90178e707da026d53f6400984e2b389a916be5c6\nSHLVL=1\nbamboo_capability_system_builder_ant_x11_Ant=/home/bamboo/buildtools/x11-ant\nbamboo_repository_name=Jalview Gitlab\nJAVA_HOME=/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/\nLANG=en_GB.UTF-8\nbamboo_buildFailed=false\nbamboo_capability_system_jdk_OpenJDK_8=/home/bamboo/buildtools/jdk/jdk-8-linux-x64/jdk\nbamboo_planRepository_branch=epic/JAL-3907_jalview_running_under_java_17\nbamboo_agentWorkingDirectory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609\nbamboo_capability_system_git_executable=/bin/git\nbamboo_repository_git_username=\nbamboo_planRepository_1_previousRevision=b0aa69ee7c5172a33cf5e8446dafc892dd485917\nbamboo_planRepository_branchDisplayName=epic/JAL-3907_jalview_running_under_java_17\nbamboo_planRepository_1_type=gitv2\nbamboo_planRepository_branchName=epic/JAL-3907_jalview_running_under_java_17\n_=/usr/bin/java\nbamboo_capability_system_builder_ant_j11_x11_Ant=/home/bamboo/buildtools/j11/x11-ant-j11\nbamboo_capability_system_builderivy_Ivy=/usr\nbamboo_plan_storageTag=plan-47972445\nbamboo_capability_system_builder_gradle_Gradle=/home/bamboo/buildtools/gradle\nbamboo_hg_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_hg-repositories-cache\nbamboo_planRepository_1_username=\nbamboo_planRepository_type=gitv2\nUSER=bamboo\nbamboo_git_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_git-repositories-cache\nbamboo_repository_git_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git\nbamboo_capability_system_builder_ant_Ant=/usr/share/ant\nbamboo_capability_system_builder_mvn3_Maven_3=/usr/share/maven\nbamboo_tmp_directory=/srv/bamboo/bamboo-home/temp\nbamboo_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB743-JOB1\nbamboo_planKey=JB-GDB743\nbamboo_repository_48169007_git_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git\nbamboo_planRepository_1_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git\nbamboo_planRepository_username=\nHOME=/home/bamboo\nbamboo_planRepository_1_branchName=epic/JAL-3907_jalview_running_under_java_17\nPATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin\n build 22-Jan-2026 16:37:24 2414 build 22-Jan-2026 16:37:25 Starting a Gradle Daemon (subsequent builds will be faster) error 22-Jan-2026 16:37:39 error 22-Jan-2026 16:37:39 FAILURE: Build failed with an exception. error 22-Jan-2026 16:37:39 error 22-Jan-2026 16:37:39 * What went wrong: error 22-Jan-2026 16:37:39 A problem occurred configuring root project 'jalview'. error 22-Jan-2026 16:37:39 > Could not resolve all files for configuration ':classpath'. error 22-Jan-2026 16:37:39 > Could not resolve com.diffplug.spotless:spotless-plugin-gradle:8.1.0. error 22-Jan-2026 16:37:39 Required by: error 22-Jan-2026 16:37:39 project : > com.diffplug.spotless:com.diffplug.spotless.gradle.plugin:8.1.0 error 22-Jan-2026 16:37:39 > No matching variant of com.diffplug.spotless:spotless-plugin-gradle:8.1.0 was found. The consumer was configured to find a runtime of a library compatible with Java 11, packaged as a jar, and its dependencies declared externally, as well as attribute 'org.gradle.plugin.api-version' with value '7.4.2' but: error 22-Jan-2026 16:37:39 - Variant 'apiElements' capability com.diffplug.spotless:spotless-plugin-gradle:8.1.0 declares a library, packaged as a jar, and its dependencies declared externally: error 22-Jan-2026 16:37:39 - Incompatible because this component declares an API of a component compatible with Java 17 and the consumer needed a runtime of a component compatible with Java 11 error 22-Jan-2026 16:37:39 - Other compatible attribute: error 22-Jan-2026 16:37:39 - Doesn't say anything about org.gradle.plugin.api-version (required '7.4.2') error 22-Jan-2026 16:37:39 - Variant 'javadocElements' capability com.diffplug.spotless:spotless-plugin-gradle:8.1.0 declares a runtime of a component, and its dependencies declared externally: error 22-Jan-2026 16:37:39 - Incompatible because this component declares documentation and the consumer needed a library error 22-Jan-2026 16:37:39 - Other compatible attributes: error 22-Jan-2026 16:37:39 - Doesn't say anything about its target Java version (required compatibility with Java 11) error 22-Jan-2026 16:37:39 - Doesn't say anything about its elements (required them packaged as a jar) error 22-Jan-2026 16:37:39 - Doesn't say anything about org.gradle.plugin.api-version (required '7.4.2') error 22-Jan-2026 16:37:39 - Variant 'runtimeElements' capability com.diffplug.spotless:spotless-plugin-gradle:8.1.0 declares a runtime of a library, packaged as a jar, and its dependencies declared externally: error 22-Jan-2026 16:37:39 - Incompatible because this component declares a component compatible with Java 17 and the consumer needed a component compatible with Java 11 error 22-Jan-2026 16:37:39 - Other compatible attribute: error 22-Jan-2026 16:37:39 - Doesn't say anything about org.gradle.plugin.api-version (required '7.4.2') error 22-Jan-2026 16:37:39 - Variant 'sourcesElements' capability com.diffplug.spotless:spotless-plugin-gradle:8.1.0 declares a runtime of a component, and its dependencies declared externally: error 22-Jan-2026 16:37:39 - Incompatible because this component declares documentation and the consumer needed a library error 22-Jan-2026 16:37:39 - Other compatible attributes: error 22-Jan-2026 16:37:39 - Doesn't say anything about its target Java version (required compatibility with Java 11) error 22-Jan-2026 16:37:39 - Doesn't say anything about its elements (required them packaged as a jar) error 22-Jan-2026 16:37:39 - Doesn't say anything about org.gradle.plugin.api-version (required '7.4.2') error 22-Jan-2026 16:37:39 > Could not resolve com.gradleup.shadow:shadow-gradle-plugin:9.3.1. error 22-Jan-2026 16:37:39 Required by: error 22-Jan-2026 16:37:39 project : > com.gradleup.shadow:com.gradleup.shadow.gradle.plugin:9.3.1 error 22-Jan-2026 16:37:39 > No matching variant of com.gradleup.shadow:shadow-gradle-plugin:9.3.1 was found. The consumer was configured to find a runtime of a library compatible with Java 11, packaged as a jar, and its dependencies declared externally, as well as attribute 'org.gradle.plugin.api-version' with value '7.4.2' but: error 22-Jan-2026 16:37:39 - Variant 'apiElements' capabilities com.github.jengelman.gradle.plugins:shadow:9.3.1 and com.github.johnrengelman:shadow:9.3.1 and com.gradleup.shadow:shadow-gradle-plugin:9.3.1 and gradle.plugin.com.github.jengelman.gradle.plugins:shadow:9.3.1 and gradle.plugin.com.github.johnrengelman:shadow:9.3.1 and io.github.goooler.shadow:shadow-gradle-plugin:9.3.1 declares a library, packaged as a jar, and its dependencies declared externally: error 22-Jan-2026 16:37:39 - Incompatible because this component declares an API of a component compatible with Java 17, as well as attribute 'org.gradle.plugin.api-version' with value '9.0.0' and the consumer needed a runtime of a component compatible with Java 11, as well as attribute 'org.gradle.plugin.api-version' with value '7.4.2' error 22-Jan-2026 16:37:39 - Variant 'javadocElements' capabilities com.github.jengelman.gradle.plugins:shadow:9.3.1 and com.github.johnrengelman:shadow:9.3.1 and com.gradleup.shadow:shadow-gradle-plugin:9.3.1 and gradle.plugin.com.github.jengelman.gradle.plugins:shadow:9.3.1 and gradle.plugin.com.github.johnrengelman:shadow:9.3.1 and io.github.goooler.shadow:shadow-gradle-plugin:9.3.1 declares a runtime of a component, and its dependencies declared externally: error 22-Jan-2026 16:37:39 - Incompatible because this component declares documentation and the consumer needed a library error 22-Jan-2026 16:37:39 - Other compatible attributes: error 22-Jan-2026 16:37:39 - Doesn't say anything about its target Java version (required compatibility with Java 11) error 22-Jan-2026 16:37:39 - Doesn't say anything about its elements (required them packaged as a jar) error 22-Jan-2026 16:37:39 - Doesn't say anything about org.gradle.plugin.api-version (required '7.4.2') error 22-Jan-2026 16:37:39 - Variant 'runtimeElements' capabilities com.github.jengelman.gradle.plugins:shadow:9.3.1 and com.github.johnrengelman:shadow:9.3.1 and com.gradleup.shadow:shadow-gradle-plugin:9.3.1 and gradle.plugin.com.github.jengelman.gradle.plugins:shadow:9.3.1 and gradle.plugin.com.github.johnrengelman:shadow:9.3.1 and io.github.goooler.shadow:shadow-gradle-plugin:9.3.1 declares a runtime of a library, packaged as a jar, and its dependencies declared externally: error 22-Jan-2026 16:37:39 - Incompatible because this component declares a component compatible with Java 17 and the consumer needed a component compatible with Java 11 error 22-Jan-2026 16:37:39 - Other compatible attribute: error 22-Jan-2026 16:37:39 - Doesn't say anything about org.gradle.plugin.api-version (required '7.4.2') error 22-Jan-2026 16:37:39 - Variant 'sourcesElements' capabilities com.github.jengelman.gradle.plugins:shadow:9.3.1 and com.github.johnrengelman:shadow:9.3.1 and com.gradleup.shadow:shadow-gradle-plugin:9.3.1 and gradle.plugin.com.github.jengelman.gradle.plugins:shadow:9.3.1 and gradle.plugin.com.github.johnrengelman:shadow:9.3.1 and io.github.goooler.shadow:shadow-gradle-plugin:9.3.1 declares a runtime of a component, and its dependencies declared externally: error 22-Jan-2026 16:37:39 - Incompatible because this component declares documentation and the consumer needed a library error 22-Jan-2026 16:37:39 - Other compatible attributes: error 22-Jan-2026 16:37:39 - Doesn't say anything about its target Java version (required compatibility with Java 11) error 22-Jan-2026 16:37:39 - Doesn't say anything about its elements (required them packaged as a jar) error 22-Jan-2026 16:37:39 - Doesn't say anything about org.gradle.plugin.api-version (required '7.4.2') error 22-Jan-2026 16:37:39 error 22-Jan-2026 16:37:39 * Try: error 22-Jan-2026 16:37:39 > Run with --stacktrace option to get the stack trace. error 22-Jan-2026 16:37:39 > Run with --info or --debug option to get more log output. error 22-Jan-2026 16:37:39 > Run with --scan to get full insights. error 22-Jan-2026 16:37:39 error 22-Jan-2026 16:37:39 * Get more help at https://help.gradle.org error 22-Jan-2026 16:37:39 error 22-Jan-2026 16:37:39 BUILD FAILED in 15s simple 22-Jan-2026 16:37:40 simple 22-Jan-2026 16:37:40 Failing task since return code of [/home/bamboo/buildtools/x11-gradle/bin/gradle -Pclover=true -PJAVA_VERSION=11 -Ptestng_excluded_groups=Not-bamboo clean cleanTest test] was 1 while expected 0 simple 22-Jan-2026 16:37:40 Finished task 'Run tests with openclover under gradle' with result: Failed simple 22-Jan-2026 16:37:40 Starting task 'Clover Report' of type 'org.jfrog.bamboo.bamboo-artifactory-plugin:artifactoryGradleTask' simple 22-Jan-2026 16:37:40 Bamboo Artifactory Plugin version: 2.6.2 command 22-Jan-2026 16:37:40 Beginning to execute external process for build 'Jalview Builds - Gradle Develop Build - epic-JAL-3907_jalview_running_under_java_17 - Clover and Tests #3 (JB-GDB743-JOB1-3)'\n ... running command line: \n/home/bamboo/buildtools/x11-gradle/bin/gradle --no-daemon -Pclover=true -PJAVA_VERSION=11 cloverReport\n ... in: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB743-JOB1\n ... using extra environment variables: \nbamboo_planRepository_1_branch=epic/JAL-3907_jalview_running_under_java_17\nbamboo_capability_system_builder_maven_Artifactory_Maven_3=/usr\nCATALINA_PID=/home/bamboo/latest/work/bamboo.pid\nbamboo_planRepository_1_branchDisplayName=epic/JAL-3907_jalview_running_under_java_17\nbamboo_repository_revision_number=90178e707da026d53f6400984e2b389a916be5c6\nbamboo_resultsUrl=https://builds.jalview.org/browse/JB-GDB743-JOB1-3\nJAVA_OPTS=-Xms512m -Xmx1024m -Dbamboo.home=/srv/bamboo/bamboo-home -Djdk.tls.ephemeralDHKeySize=2048\nbamboo_repository_48169007_revision_number=90178e707da026d53f6400984e2b389a916be5c6\nbamboo_build_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB743-JOB1\nbamboo_planRepository_1_name=Jalview Gitlab\nbamboo_buildKey=JB-GDB743-JOB1\nbamboo_shortPlanName=epic-JAL-3907_jalview_running_under_java_17\nbamboo_repository_48169007_name=Jalview Gitlab\nbamboo_planRepository_name=Jalview Gitlab\nbamboo_repository_48169007_git_username=\nLOGNAME=bamboo\nbamboo_buildNumber=3\nPWD=/\nbamboo_capability_system_builder_command_Eclipse_2019_09=/home/bamboo/buildtools/eclipse/jee-2019-09/eclipse/eclipse\nbamboo_shortJobName=Clover and Tests\nbamboo_buildResultsUrl=https://builds.jalview.org/browse/JB-GDB743-JOB1-3\nbamboo_planRepository_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git\nSHELL=/bin/bash\nbamboo_agentId=196609\nbamboo_planName=Jalview Builds - Gradle Develop Build - epic-JAL-3907_jalview_running_under_java_17\nbamboo_shortPlanKey=GDB743\nbamboo_shortJobKey=JOB1\nbamboo_repository_48169007_previous_revision_number=b0aa69ee7c5172a33cf5e8446dafc892dd485917\nbamboo_repository_48169007_git_branch=epic/JAL-3907_jalview_running_under_java_17\nbamboo_capability_system_jdk_OpenJDK_11=/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk\nbamboo_repository_48169007_branch_name=epic/JAL-3907_jalview_running_under_java_17\nbamboo_planRepository_revision=90178e707da026d53f6400984e2b389a916be5c6\nbamboo_buildTimeStamp=2026-01-22T16:37:23.483Z\nbamboo_repository_previous_revision_number=b0aa69ee7c5172a33cf5e8446dafc892dd485917\nbamboo_planRepository_previousRevision=b0aa69ee7c5172a33cf5e8446dafc892dd485917\nbamboo_repository_git_branch=epic/JAL-3907_jalview_running_under_java_17\nbamboo_buildResultKey=JB-GDB743-JOB1-3\nbamboo_repository_branch_name=epic/JAL-3907_jalview_running_under_java_17\nbamboo_buildPlanName=Jalview Builds - Gradle Develop Build - epic-JAL-3907_jalview_running_under_java_17 - Clover and Tests\nbamboo_capability_system_builder_ant_j11_Ant=/home/bamboo/buildtools/j11/ant-j11\nbamboo_planRepository_1_revision=90178e707da026d53f6400984e2b389a916be5c6\nSHLVL=1\nbamboo_capability_system_builder_ant_x11_Ant=/home/bamboo/buildtools/x11-ant\nbamboo_repository_name=Jalview Gitlab\nbamboo_build_commandline_org_jfrog_bamboo_bamboo_artifactory_plugin_artifactoryGradleTask_2=/home/bamboo/buildtools/x11-gradle/bin/gradle -Pclover=true -PJAVA_VERSION=11 -Ptestng_excluded_groups=Not-bamboo clean cleanTest test\nJAVA_HOME=/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/\nLANG=en_GB.UTF-8\nbamboo_buildFailed=true\nbamboo_capability_system_jdk_OpenJDK_8=/home/bamboo/buildtools/jdk/jdk-8-linux-x64/jdk\nbamboo_planRepository_branch=epic/JAL-3907_jalview_running_under_java_17\nbamboo_agentWorkingDirectory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609\nbamboo_jobFailed=true\nbamboo_capability_system_git_executable=/bin/git\nbamboo_repository_git_username=\nbamboo_planRepository_1_previousRevision=b0aa69ee7c5172a33cf5e8446dafc892dd485917\nbamboo_planRepository_branchDisplayName=epic/JAL-3907_jalview_running_under_java_17\nbamboo_planRepository_1_type=gitv2\nbamboo_planRepository_branchName=epic/JAL-3907_jalview_running_under_java_17\n_=/usr/bin/java\nbamboo_capability_system_builder_ant_j11_x11_Ant=/home/bamboo/buildtools/j11/x11-ant-j11\nbamboo_capability_system_builderivy_Ivy=/usr\nbamboo_plan_storageTag=plan-47972445\nbamboo_capability_system_builder_gradle_Gradle=/home/bamboo/buildtools/gradle\nbamboo_hg_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_hg-repositories-cache\nbamboo_planRepository_1_username=\nbamboo_planRepository_type=gitv2\nUSER=bamboo\nbamboo_git_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_git-repositories-cache\nbamboo_repository_git_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git\nbamboo_capability_system_builder_ant_Ant=/usr/share/ant\nbamboo_capability_system_builder_mvn3_Maven_3=/usr/share/maven\nbamboo_tmp_directory=/srv/bamboo/bamboo-home/temp\nbamboo_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB743-JOB1\nbamboo_planKey=JB-GDB743\nbamboo_repository_48169007_git_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git\nbamboo_planRepository_1_repositoryUrl=https://gitlab.jalview.org/jalview/jalview.git\nbamboo_planRepository_username=\nHOME=/home/bamboo\nbamboo_planRepository_1_branchName=epic/JAL-3907_jalview_running_under_java_17\nPATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin\n build 22-Jan-2026 16:37:40 2414 error 22-Jan-2026 16:37:43 error 22-Jan-2026 16:37:43 FAILURE: Build failed with an exception. error 22-Jan-2026 16:37:43 error 22-Jan-2026 16:37:43 * What went wrong: error 22-Jan-2026 16:37:43 A problem occurred configuring root project 'jalview'. error 22-Jan-2026 16:37:43 > Could not resolve all files for configuration ':classpath'. error 22-Jan-2026 16:37:43 > Could not resolve com.diffplug.spotless:spotless-plugin-gradle:8.1.0. error 22-Jan-2026 16:37:43 Required by: error 22-Jan-2026 16:37:43 project : > com.diffplug.spotless:com.diffplug.spotless.gradle.plugin:8.1.0 error 22-Jan-2026 16:37:43 > No matching variant of com.diffplug.spotless:spotless-plugin-gradle:8.1.0 was found. The consumer was configured to find a runtime of a library compatible with Java 11, packaged as a jar, and its dependencies declared externally, as well as attribute 'org.gradle.plugin.api-version' with value '7.4.2' but: error 22-Jan-2026 16:37:43 - Variant 'apiElements' capability com.diffplug.spotless:spotless-plugin-gradle:8.1.0 declares a library, packaged as a jar, and its dependencies declared externally: error 22-Jan-2026 16:37:43 - Incompatible because this component declares an API of a component compatible with Java 17 and the consumer needed a runtime of a component compatible with Java 11 error 22-Jan-2026 16:37:43 - Other compatible attribute: error 22-Jan-2026 16:37:43 - Doesn't say anything about org.gradle.plugin.api-version (required '7.4.2') error 22-Jan-2026 16:37:43 - Variant 'javadocElements' capability com.diffplug.spotless:spotless-plugin-gradle:8.1.0 declares a runtime of a component, and its dependencies declared externally: error 22-Jan-2026 16:37:43 - Incompatible because this component declares documentation and the consumer needed a library error 22-Jan-2026 16:37:43 - Other compatible attributes: error 22-Jan-2026 16:37:43 - Doesn't say anything about its target Java version (required compatibility with Java 11) error 22-Jan-2026 16:37:43 - Doesn't say anything about its elements (required them packaged as a jar) error 22-Jan-2026 16:37:43 - Doesn't say anything about org.gradle.plugin.api-version (required '7.4.2') error 22-Jan-2026 16:37:43 - Variant 'runtimeElements' capability com.diffplug.spotless:spotless-plugin-gradle:8.1.0 declares a runtime of a library, packaged as a jar, and its dependencies declared externally: error 22-Jan-2026 16:37:43 - Incompatible because this component declares a component compatible with Java 17 and the consumer needed a component compatible with Java 11 error 22-Jan-2026 16:37:43 - Other compatible attribute: error 22-Jan-2026 16:37:43 - Doesn't say anything about org.gradle.plugin.api-version (required '7.4.2') error 22-Jan-2026 16:37:43 - Variant 'sourcesElements' capability com.diffplug.spotless:spotless-plugin-gradle:8.1.0 declares a runtime of a component, and its dependencies declared externally: error 22-Jan-2026 16:37:43 - Incompatible because this component declares documentation and the consumer needed a library error 22-Jan-2026 16:37:43 - Other compatible attributes: error 22-Jan-2026 16:37:43 - Doesn't say anything about its target Java version (required compatibility with Java 11) error 22-Jan-2026 16:37:43 - Doesn't say anything about its elements (required them packaged as a jar) error 22-Jan-2026 16:37:43 - Doesn't say anything about org.gradle.plugin.api-version (required '7.4.2') error 22-Jan-2026 16:37:43 > Could not resolve com.gradleup.shadow:shadow-gradle-plugin:9.3.1. error 22-Jan-2026 16:37:43 Required by: error 22-Jan-2026 16:37:43 project : > com.gradleup.shadow:com.gradleup.shadow.gradle.plugin:9.3.1 error 22-Jan-2026 16:37:43 > No matching variant of com.gradleup.shadow:shadow-gradle-plugin:9.3.1 was found. The consumer was configured to find a runtime of a library compatible with Java 11, packaged as a jar, and its dependencies declared externally, as well as attribute 'org.gradle.plugin.api-version' with value '7.4.2' but: error 22-Jan-2026 16:37:43 - Variant 'apiElements' capabilities com.github.jengelman.gradle.plugins:shadow:9.3.1 and com.github.johnrengelman:shadow:9.3.1 and com.gradleup.shadow:shadow-gradle-plugin:9.3.1 and gradle.plugin.com.github.jengelman.gradle.plugins:shadow:9.3.1 and gradle.plugin.com.github.johnrengelman:shadow:9.3.1 and io.github.goooler.shadow:shadow-gradle-plugin:9.3.1 declares a library, packaged as a jar, and its dependencies declared externally: error 22-Jan-2026 16:37:43 - Incompatible because this component declares an API of a component compatible with Java 17, as well as attribute 'org.gradle.plugin.api-version' with value '9.0.0' and the consumer needed a runtime of a component compatible with Java 11, as well as attribute 'org.gradle.plugin.api-version' with value '7.4.2' error 22-Jan-2026 16:37:43 - Variant 'javadocElements' capabilities com.github.jengelman.gradle.plugins:shadow:9.3.1 and com.github.johnrengelman:shadow:9.3.1 and com.gradleup.shadow:shadow-gradle-plugin:9.3.1 and gradle.plugin.com.github.jengelman.gradle.plugins:shadow:9.3.1 and gradle.plugin.com.github.johnrengelman:shadow:9.3.1 and io.github.goooler.shadow:shadow-gradle-plugin:9.3.1 declares a runtime of a component, and its dependencies declared externally: error 22-Jan-2026 16:37:43 - Incompatible because this component declares documentation and the consumer needed a library error 22-Jan-2026 16:37:43 - Other compatible attributes: error 22-Jan-2026 16:37:43 - Doesn't say anything about its target Java version (required compatibility with Java 11) error 22-Jan-2026 16:37:43 - Doesn't say anything about its elements (required them packaged as a jar) error 22-Jan-2026 16:37:43 - Doesn't say anything about org.gradle.plugin.api-version (required '7.4.2') error 22-Jan-2026 16:37:43 - Variant 'runtimeElements' capabilities com.github.jengelman.gradle.plugins:shadow:9.3.1 and com.github.johnrengelman:shadow:9.3.1 and com.gradleup.shadow:shadow-gradle-plugin:9.3.1 and gradle.plugin.com.github.jengelman.gradle.plugins:shadow:9.3.1 and gradle.plugin.com.github.johnrengelman:shadow:9.3.1 and io.github.goooler.shadow:shadow-gradle-plugin:9.3.1 declares a runtime of a library, packaged as a jar, and its dependencies declared externally: error 22-Jan-2026 16:37:43 - Incompatible because this component declares a component compatible with Java 17 and the consumer needed a component compatible with Java 11 error 22-Jan-2026 16:37:43 - Other compatible attribute: error 22-Jan-2026 16:37:43 - Doesn't say anything about org.gradle.plugin.api-version (required '7.4.2') error 22-Jan-2026 16:37:43 - Variant 'sourcesElements' capabilities com.github.jengelman.gradle.plugins:shadow:9.3.1 and com.github.johnrengelman:shadow:9.3.1 and com.gradleup.shadow:shadow-gradle-plugin:9.3.1 and gradle.plugin.com.github.jengelman.gradle.plugins:shadow:9.3.1 and gradle.plugin.com.github.johnrengelman:shadow:9.3.1 and io.github.goooler.shadow:shadow-gradle-plugin:9.3.1 declares a runtime of a component, and its dependencies declared externally: error 22-Jan-2026 16:37:43 - Incompatible because this component declares documentation and the consumer needed a library error 22-Jan-2026 16:37:43 - Other compatible attributes: error 22-Jan-2026 16:37:43 - Doesn't say anything about its target Java version (required compatibility with Java 11) error 22-Jan-2026 16:37:43 - Doesn't say anything about its elements (required them packaged as a jar) error 22-Jan-2026 16:37:43 - Doesn't say anything about org.gradle.plugin.api-version (required '7.4.2') error 22-Jan-2026 16:37:43 error 22-Jan-2026 16:37:43 * Try: error 22-Jan-2026 16:37:43 > Run with --stacktrace option to get the stack trace. error 22-Jan-2026 16:37:43 > Run with --info or --debug option to get more log output. error 22-Jan-2026 16:37:43 > Run with --scan to get full insights. error 22-Jan-2026 16:37:43 error 22-Jan-2026 16:37:43 * Get more help at https://help.gradle.org error 22-Jan-2026 16:37:43 error 22-Jan-2026 16:37:43 BUILD FAILED in 3s simple 22-Jan-2026 16:37:43 simple 22-Jan-2026 16:37:43 Failing task since return code of [/home/bamboo/buildtools/x11-gradle/bin/gradle --no-daemon -Pclover=true -PJAVA_VERSION=11 cloverReport] was 1 while expected 0 simple 22-Jan-2026 16:37:43 Finished task 'Clover Report' with result: Failed simple 22-Jan-2026 16:37:43 Starting task 'TestNG Parser' of type 'com.atlassian.bamboo.plugins.testresultparser:task.testresultparser.testng' simple 22-Jan-2026 16:37:43 Parsing test results under /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB743-JOB1... simple 22-Jan-2026 16:37:43 File /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB743-JOB1/build/reports/tests/testTask0/testng-results.xml was ignored because it was modified (2026-01-15 16:16:16.000) before task started (2026-01-22 16:37:23.546) simple 22-Jan-2026 16:37:43 File /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB743-JOB1/build/reports/tests/testTask1/testng-results.xml was ignored because it was modified (2026-01-15 16:18:24.000) before task started (2026-01-22 16:37:23.546) simple 22-Jan-2026 16:37:43 File /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB743-JOB1/build/reports/tests/testTask2/testng-results.xml was ignored because it was modified (2026-01-15 16:18:29.000) before task started (2026-01-22 16:37:23.546) simple 22-Jan-2026 16:37:43 Failing task since test cases were expected but none were found. simple 22-Jan-2026 16:37:43 Finished task 'TestNG Parser' with result: Failed simple 22-Jan-2026 16:37:43 Running post build plugin 'NCover Results Collector' simple 22-Jan-2026 16:37:43 Running post build plugin 'Artifact Copier' simple 22-Jan-2026 16:37:43 Publishing an artifact: Clover Report (System) simple 22-Jan-2026 16:37:50 Finished publishing of artifact Job artifact: [Clover Report (System)], pattern: [**/*.*] anchored at: [build/reports/clover] in 6.946 s simple 22-Jan-2026 16:37:50 Publishing an artifact: TestNG report error 22-Jan-2026 16:37:50 Unable to publish artifact [TestNG report]: the source directory /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB743-JOB1/build/reports/tests/test does not exist. simple 22-Jan-2026 16:37:50 The artifact hasn't been successfully published after 1.710 ms simple 22-Jan-2026 16:37:50 Running post build plugin 'Artifactory Release Management Staging' simple 22-Jan-2026 16:37:50 Running post build plugin 'Artifactory Build Info Copier' simple 22-Jan-2026 16:37:50 Running post build plugin 'Artifactory Gradle Properties Info Copier' simple 22-Jan-2026 16:37:50 Running post build plugin 'npm Cache Cleanup' simple 22-Jan-2026 16:37:50 Running post build plugin 'Clover Results Collector' simple 22-Jan-2026 16:37:50 Running post build plugin 'Docker Container Cleanup' simple 22-Jan-2026 16:37:50 Finalising the build... simple 22-Jan-2026 16:37:50 Stopping timer. simple 22-Jan-2026 16:37:50 Build JB-GDB743-JOB1-3 completed. simple 22-Jan-2026 16:37:50 Running on server: post build plugin 'NCover Results Collector' simple 22-Jan-2026 16:37:50 Running on server: post build plugin 'Build Hanging Detection Configuration' simple 22-Jan-2026 16:37:50 Running on server: post build plugin 'Clover Delta Calculator' simple 22-Jan-2026 16:37:50 Running on server: post build plugin 'Maven Dependencies Postprocessor' simple 22-Jan-2026 16:37:50 All post build plugins have finished simple 22-Jan-2026 16:37:50 Generating build results summary... simple 22-Jan-2026 16:37:50 Saving build results to disk... simple 22-Jan-2026 16:37:50 Logging substituted variables... simple 22-Jan-2026 16:37:50 Indexing build results... simple 22-Jan-2026 16:37:50 Finished building JB-GDB743-JOB1-3.