| Class | Line # | Actions | |||
|---|---|---|---|---|---|
| Jws2Client | 37 | 1 | 2 | 0.3333333433.3% |
|
Class Jws2Client |
Line # 37 |
1 |
2 |
0.3333333433.3% |
|---|---|---|---|---|
| Jws2Client(AlignFrame,WsParamSetI,List<ArgumentI>) Jws2Client(AlignFrame,WsParamSetI,List<ArgumentI>) | 4848 | 1.01 | 1.01 | 0.0 0.00% |
| Jws2Client() Jws2Client() | 5555 | 0.00 | 1.01 | -1.0 -1.0 - |
|
0.33333334
|
jalview.project.Jalview2xmlTests.viewRefPdbAnnotationjalview.project.Jalview2xmlTests.viewRefPdbAnnotation | 1PASS | ||
|
0.33333334
|
jalview.util.Log4jTest.testLog4jjalview.util.Log4jTest.testLog4j | 1PASS | ||
|
0.33333334
|
jalview.gui.ProgressBarTest.testSetProgressBarjalview.gui.ProgressBarTest.testSetProgressBar | 1PASS | ||
|
0.33333334
|
jalview.util.FileUtilsTest.testDirnamesAndBasenamesjalview.util.FileUtilsTest.testDirnamesAndBasenames | 1PASS | ||
|
0.33333334
|
jalview.gui.AlignFrameTest.testChangeColour_background_groupsAndThresholdsjalview.gui.AlignFrameTest.testChangeColour_background_groupsAndThresholds | 1PASS | ||
|
0.33333334
|
jalview.gui.AlignmentPanelTest.testSetOverviewTitle_automaticOverviewjalview.gui.AlignmentPanelTest.testSetOverviewTitle_automaticOverview | 1PASS | ||
|
0.33333334
|
jalview.util.FileUtilsTest.stringGetBaseAndExtensionTestjalview.util.FileUtilsTest.stringGetBaseAndExtensionTest | 1PASS | ||
|
0.33333334
|
jalview.gui.AppVarnaTest.testReplaceOddGapsjalview.gui.AppVarnaTest.testReplaceOddGaps | 1PASS | ||
|
0.33333334
|
jalview.viewmodel.OverviewDimensionsShowHiddenTest.testFromMouseWithHiddenColsAtEndjalview.viewmodel.OverviewDimensionsShowHiddenTest.testFromMouseWithHiddenColsAtEnd | 1PASS | ||
|
0.33333334
|
jalview.workers.AlignCaclManager2Test.testStartRegisteredWorkerjalview.workers.AlignCaclManager2Test.testStartRegisteredWorker | 1PASS | ||
|
0.33333334
|
jalview.structure.StructureSelectionManagerTest.testSaveAnnotationProviderjalview.structure.StructureSelectionManagerTest.testSaveAnnotationProvider | 1PASS | ||
|
0.33333334
|
jalview.gui.StructureChooserTest.openStructureFileForSequenceTestjalview.gui.StructureChooserTest.openStructureFileForSequenceTest | 1PASS | ||
|
0.33333334
|
jalview.viewmodel.OverviewDimensionsHideHiddenTest.testFromMouseWithHiddenColsAtEndjalview.viewmodel.OverviewDimensionsHideHiddenTest.testFromMouseWithHiddenColsAtEnd | 1PASS | ||
|
0.33333334
|
jalview.util.DBRefUtilsTest.testGetCanonicalNamejalview.util.DBRefUtilsTest.testGetCanonicalName | 1PASS | ||
|
0.33333334
|
jalview.project.Jalview2xmlTests.noDuplicatePdbMappingsMadejalview.project.Jalview2xmlTests.noDuplicatePdbMappingsMade | 1PASS | ||
|
0.33333334
|
jalview.io.FeaturesFileTest.testPrintGffFormat_withFiltersjalview.io.FeaturesFileTest.testPrintGffFormat_withFilters | 1PASS | ||
|
0.33333334
|
jalview.util.FileUtilsTest.testJavaFileGlobjalview.util.FileUtilsTest.testJavaFileGlob | 1PASS | ||
|
0.33333334
|
jalview.workers.AlignCaclManager2Test.testGetWorkersOfClassjalview.workers.AlignCaclManager2Test.testGetWorkersOfClass | 1PASS | ||
|
0.33333334
|
jalview.project.Jalview2xmlTests.testStoreAndRecoverColourThresholdsjalview.project.Jalview2xmlTests.testStoreAndRecoverColourThresholds | 1PASS | ||
|
0.33333334
|
jalview.bin.CommandsTest2.do_structureOpeningArgsTestjalview.bin.CommandsTest2.do_structureOpeningArgsTest | 1PASS | ||
|
0.33333334
|
jalview.bin.HiDPISettingTest2.testHiDPISettingsjalview.bin.HiDPISettingTest2.testHiDPISettings | 1PASS | ||
|
0.33333334
|
jalview.workers.AlignCaclManager2Test.testIsWorkingjalview.workers.AlignCaclManager2Test.testIsWorking | 1PASS | ||
|
0.33333334
|
jalview.project.Jalview2xmlTests.testSaveLoadFeatureColoursAndFiltersjalview.project.Jalview2xmlTests.testSaveLoadFeatureColoursAndFilters | 1PASS | ||
|
0.33333334
|
jalview.util.ImageMakerTest.testParseScaleWidthHeightStringsjalview.util.ImageMakerTest.testParseScaleWidthHeightStrings | 1PASS | ||
|
0.33333334
|
jalview.datamodel.AllColsIteratorTest.testHasNextAndNextjalview.datamodel.AllColsIteratorTest.testHasNextAndNext | 1PASS | ||
|
0.33333334
|
jalview.workers.AlignCaclManager2Test.testStartOneShotWorkerjalview.workers.AlignCaclManager2Test.testStartOneShotWorker | 1PASS | ||
|
0.33333334
|
jalview.controller.AlignViewControllerTest.testSelectColumnsWithHighlightjalview.controller.AlignViewControllerTest.testSelectColumnsWithHighlight | 1PASS | ||
|
0.33333334
|
jalview.gui.AlignViewportTest.testGetSelectionAsNewSequences_withContactMatricesjalview.gui.AlignViewportTest.testGetSelectionAsNewSequences_withContactMatrices | 1PASS | ||
|
0.33333334
|
jalview.io.vcf.VCFLoaderTest.testDoLoadjalview.io.vcf.VCFLoaderTest.testDoLoad | 1PASS | ||
|
0.33333334
|
jalview.util.MappingUtilsTest.testMapColumnSelection_hiddenColumnsjalview.util.MappingUtilsTest.testMapColumnSelection_hiddenColumns | 1PASS | ||
|
0.33333334
|
jalview.util.FileUtilsTest.getMatchingVersionedFilesTestjalview.util.FileUtilsTest.getMatchingVersionedFilesTest | 1PASS | ||
|
0.33333334
|
jalview.util.FileUtilsTest.testDirnamesAndBasenamesjalview.util.FileUtilsTest.testDirnamesAndBasenames | 1PASS | ||
|
0.33333334
|
jalview.util.FileUtilsTest.getMatchingVersionedFilesTestjalview.util.FileUtilsTest.getMatchingVersionedFilesTest | 1PASS | ||
|
0.33333334
|
jalview.gui.QuitHandlerTest.testSavedProjectChangesjalview.gui.QuitHandlerTest.testSavedProjectChanges | 1PASS | ||
|
0.33333334
|
jalview.io.TCoffeeScoreFileTest.testGetAsArrayjalview.io.TCoffeeScoreFileTest.testGetAsArray | 1PASS | ||
|
0.33333334
|
jalview.viewmodel.OverviewDimensionsHideHiddenTest.testFromMouseWithHiddenRowsAtStartjalview.viewmodel.OverviewDimensionsHideHiddenTest.testFromMouseWithHiddenRowsAtStart | 1PASS | ||
|
0.33333334
|
jalview.io.ScoreMatrixFileTest.testParseMatrix_ncbiMixedDelimitersjalview.io.ScoreMatrixFileTest.testParseMatrix_ncbiMixedDelimiters | 1PASS | ||
|
0.33333334
|
jalview.io.StockholmFileTest.stockholmFileRnaSSAlphaCharsjalview.io.StockholmFileTest.stockholmFileRnaSSAlphaChars | 1PASS | ||
|
0.33333334
|
jalview.util.FormatTest.testFormat_scientificjalview.util.FormatTest.testFormat_scientific | 1PASS | ||
|
0.33333334
|
jalview.bin.CommandsTest.allLinkedIdsTestjalview.bin.CommandsTest.allLinkedIdsTest | 1PASS | ||
|
0.33333334
|
jalview.bin.CommandsTest2.do_structureOpeningArgsTestjalview.bin.CommandsTest2.do_structureOpeningArgsTest | 1PASS | ||
|
0.33333334
|
jalview.util.matcher.MatcherTest.testConstructorjalview.util.matcher.MatcherTest.testConstructor | 1PASS | ||
|
0.33333334
|
jalview.gui.structurechooser.StructureChooserQuerySourceTest.cascadingThreeDBandPDBQuerysjalview.gui.structurechooser.StructureChooserQuerySourceTest.cascadingThreeDBandPDBQuerys | 1PASS | ||
|
0.33333334
|
jalview.io.WindowsFileLoadAndSaveTest.loadAndSaveAlignmentjalview.io.WindowsFileLoadAndSaveTest.loadAndSaveAlignment | 1PASS | ||
|
0.33333334
|
jalview.viewmodel.OverviewDimensionsHideHiddenTest.testSetBoxFromViewportHiddenRowsAtStartjalview.viewmodel.OverviewDimensionsHideHiddenTest.testSetBoxFromViewportHiddenRowsAtStart | 1PASS | ||
|
0.33333334
|
jalview.bin.CommandsTest.headlessOrGuiImageOutputTestjalview.bin.CommandsTest.headlessOrGuiImageOutputTest | 1PASS | ||
|
0.33333334
|
jalview.bin.CommandsTest.allLinkedIdsTestjalview.bin.CommandsTest.allLinkedIdsTest | 1PASS | ||
|
0.33333334
|
jalview.io.ScoreMatrixFileTest.testParseMatrix_ncbiTooManyColumnsjalview.io.ScoreMatrixFileTest.testParseMatrix_ncbiTooManyColumns | 1PASS | ||
|
0.33333334
|
jalview.io.vcf.VCFLoaderTest.testDoLoad_vepCsqjalview.io.vcf.VCFLoaderTest.testDoLoad_vepCsq | 1PASS | ||
|
0.33333334
|
jalview.project.Jalview2xmlTests.testMergeDatasetsforViewsjalview.project.Jalview2xmlTests.testMergeDatasetsforViews | 1PASS | ||
|
0.33333334
|
jalview.io.StockholmFileTest.pfamFileIOjalview.io.StockholmFileTest.pfamFileIO | 1PASS | ||
|
0.33333334
|
jalview.bin.CommandsTest.argFilesGlobAndSubstitutionsTestjalview.bin.CommandsTest.argFilesGlobAndSubstitutionsTest | 1PASS | ||
|
0.33333334
|
jalview.gui.PopupMenuTest.testConfigureReferenceAnnotationsMenu_notOnAlignmentjalview.gui.PopupMenuTest.testConfigureReferenceAnnotationsMenu_notOnAlignment | 1PASS | ||
|
0.33333334
|
jalview.gui.AnnotationLabelsTest2.testIdWidthNoChangesjalview.gui.AnnotationLabelsTest2.testIdWidthNoChanges | 1PASS | ||
|
0.33333334
|
jalview.util.FileUtilsTest.getMatchingVersionedFilesTestjalview.util.FileUtilsTest.getMatchingVersionedFilesTest | 1PASS | ||
|
0.33333334
|
jalview.bin.CommandsTest.argFilesGlobAndSubstitutionsTestjalview.bin.CommandsTest.argFilesGlobAndSubstitutionsTest | 1PASS | ||
|
0.33333334
|
jalview.gui.AnnotationChooserTest.testBuildActionButtonsPaneljalview.gui.AnnotationChooserTest.testBuildActionButtonsPanel | 1PASS | ||
|
0.33333334
|
jalview.gui.AnnotationLabelsTest2.testIdWidthChangesjalview.gui.AnnotationLabelsTest2.testIdWidthChanges | 1PASS | ||
|
0.33333334
|
jalview.bin.CommandsTest.allLinkedIdsTestjalview.bin.CommandsTest.allLinkedIdsTest | 1PASS | ||
|
0.33333334
|
jalview.ws.dbsources.EBIAlphaFoldTest.checkImportPAEToStructurejalview.ws.dbsources.EBIAlphaFoldTest.checkImportPAEToStructure | 1PASS | ||
|
0.33333334
|
jalview.io.FileIOTester.testStarsInFasta2jalview.io.FileIOTester.testStarsInFasta2 | 1PASS | ||
|
0.33333334
|
jalview.project.Jalview2xmlTests.testRNAStructureRecoveryjalview.project.Jalview2xmlTests.testRNAStructureRecovery | 1PASS | ||
|
0.33333334
|
jalview.project.Jalview2xmlTests.testStoreAndRecoverPDBEntryjalview.project.Jalview2xmlTests.testStoreAndRecoverPDBEntry | 1PASS | ||
|
0.33333334
|
jalview.io.FeaturesFileTest.testPrintGffFormatjalview.io.FeaturesFileTest.testPrintGffFormat | 1PASS | ||
|
0.33333334
|
jalview.bin.CommandsTest2.do_structureOpeningArgsTestjalview.bin.CommandsTest2.do_structureOpeningArgsTest | 1PASS | ||
|
0.33333334
|
jalview.gui.HelpTest.checkHelpTargetsjalview.gui.HelpTest.checkHelpTargets | 1PASS | ||
|
0.33333334
|
jalview.project.Jalview2xmlTests.testStoreAndRecoverExpandedviewsjalview.project.Jalview2xmlTests.testStoreAndRecoverExpandedviews | 1PASS | ||
|
0.33333334
|
jalview.bin.CommandsTest.allLinkedIdsTestjalview.bin.CommandsTest.allLinkedIdsTest | 1PASS | ||
|
0.33333334
|
jalview.util.FileUtilsTest.testJavaFileGlobjalview.util.FileUtilsTest.testJavaFileGlob | 1PASS | ||
|
0.33333334
|
jalview.workers.AlignCaclManager2Test.testIsWorkingWithAnnotationjalview.workers.AlignCaclManager2Test.testIsWorkingWithAnnotation | 1PASS | ||
|
0.33333334
|
jalview.gui.structurechooser.StructureChooserQuerySourceTest.cascadingThreeDBandPDBQuerysjalview.gui.structurechooser.StructureChooserQuerySourceTest.cascadingThreeDBandPDBQuerys | 1PASS | ||
|
0.33333334
|
jalview.viewmodel.ViewportRangesTest.testSetViewportLocationjalview.viewmodel.ViewportRangesTest.testSetViewportLocation | 1PASS | ||
|
0.33333334
|
jalview.gui.AnnotationColumnChooserTest.testResetjalview.gui.AnnotationColumnChooserTest.testReset | 1PASS | ||
|
0.33333334
|
jalview.bin.CommandsTest.allLinkedIdsTestjalview.bin.CommandsTest.allLinkedIdsTest | 1PASS | ||
|
0.33333334
|
jalview.gui.AnnotationChooserTest.testBuildApplyToOptionsPanel_noSelectionGroupjalview.gui.AnnotationChooserTest.testBuildApplyToOptionsPanel_noSelectionGroup | 1PASS | ||
|
0.33333334
|
jalview.workers.AlignCaclManager2Test.restartOneShotWorkerjalview.workers.AlignCaclManager2Test.restartOneShotWorker | 1PASS | ||
|
0.33333334
|
jalview.project.Jalview2xmlTests.testSaveAndLoadAnnotationBasedTreejalview.project.Jalview2xmlTests.testSaveAndLoadAnnotationBasedTree | 1PASS | ||
|
0.33333334
|
jalview.viewmodel.ViewportRangesTest.testScrollUpjalview.viewmodel.ViewportRangesTest.testScrollUp | 1PASS | ||
|
0.33333334
|
jalview.project.Jalview2xmlTests.testColourByAnnotScoresjalview.project.Jalview2xmlTests.testColourByAnnotScores | 1PASS | ||
|
0.33333334
|
jalview.gui.structurechooser.StructureChooserQuerySourceTest.cascadingThreeDBandPDBQuerysjalview.gui.structurechooser.StructureChooserQuerySourceTest.cascadingThreeDBandPDBQuerys | 1PASS | ||
|
0.33333334
|
jalview.structure.StructureSelectionManagerTest.testSaveAnnotationProviderjalview.structure.StructureSelectionManagerTest.testSaveAnnotationProvider | 1PASS | ||
|
0.33333334
|
jalview.project.Jalview2xmlTests.testStoreAndRestoreIDwidthAndAnnotationHeightjalview.project.Jalview2xmlTests.testStoreAndRestoreIDwidthAndAnnotationHeight | 1PASS | ||
|
0.33333334
|
jalview.util.FileUtilsTest.testJavaFileGlobjalview.util.FileUtilsTest.testJavaFileGlob | 1PASS | ||
|
0.33333334
|
jalview.gui.AssociatePDBFileTest.testAssociatePDBFilejalview.gui.AssociatePDBFileTest.testAssociatePDBFile | 1PASS | ||
|
0.33333334
|
jalview.gui.AnnotationLabelsTest.testDrawLabelsjalview.gui.AnnotationLabelsTest.testDrawLabels | 1PASS | ||
|
0.33333334
|
jalview.util.StringUtilsTest.testParseIntjalview.util.StringUtilsTest.testParseInt | 1PASS | ||
|
0.33333334
|
jalview.io.FeaturesFileTest.testParsejalview.io.FeaturesFileTest.testParse | 1PASS | ||
|
0.33333334
|
jalview.viewmodel.OverviewDimensionsShowHiddenTest.testFromMouseWithHiddenRowsInMiddlejalview.viewmodel.OverviewDimensionsShowHiddenTest.testFromMouseWithHiddenRowsInMiddle | 1PASS | ||
|
0.33333334
|
jalview.util.MappingUtilsTest.testMapEditCommandjalview.util.MappingUtilsTest.testMapEditCommand | 1PASS | ||
|
0.33333334
|
jalview.project.Jalview2xmlTests.testStoreAndRecoverHmmProfilejalview.project.Jalview2xmlTests.testStoreAndRecoverHmmProfile | 1PASS | ||
|
0.33333334
|
jalview.structure.StructureSelectionManagerTest.testSetMapping_seqFeaturesjalview.structure.StructureSelectionManagerTest.testSetMapping_seqFeatures | 1PASS | ||
|
0.33333334
|
jalview.gui.AnnotationLabelsTest2.testIdWidthNoChangesjalview.gui.AnnotationLabelsTest2.testIdWidthNoChanges | 1PASS | ||
|
0.33333334
|
jalview.util.imagemaker.BitmapImageSizeTest.testCacheSettingsRecoveryjalview.util.imagemaker.BitmapImageSizeTest.testCacheSettingsRecovery | 1PASS | ||
|
0.33333334
|
jalview.viewmodel.OverviewDimensionsHideHiddenTest.testSetBoxFromViewportHiddenColsInMiddlejalview.viewmodel.OverviewDimensionsHideHiddenTest.testSetBoxFromViewportHiddenColsInMiddle | 1PASS | ||
|
0.33333334
|
jalview.gui.AnnotationLabelsTest.testDrawLabelsjalview.gui.AnnotationLabelsTest.testDrawLabels | 1PASS | ||
|
0.33333334
|
jalview.util.matcher.ConditionTest.testFromStringjalview.util.matcher.ConditionTest.testFromString | 1PASS | ||
|
0.33333334
|
jalview.util.MappingUtilsTest.testRemoveStartPositionsjalview.util.MappingUtilsTest.testRemoveStartPositions | 1PASS | ||
|
0.33333334
|
jalview.workers.AlignCalcManagerTest.testRemoveWorkerForAnnotationjalview.workers.AlignCalcManagerTest.testRemoveWorkerForAnnotation | 1PASS | ||
|
0.33333334
|
jalview.io.ScoreMatrixFileTest.testParseMatrix_ncbiBadDelimiterjalview.io.ScoreMatrixFileTest.testParseMatrix_ncbiBadDelimiter | 1PASS | ||
|
0.33333334
|
jalview.gui.QuitHandlerTest.testForceQuitjalview.gui.QuitHandlerTest.testForceQuit | 1PASS | ||
|
0.33333334
|
jalview.renderer.seqfeatures.FeatureColourFinderTest.testFindFeatureColour_gapPositionjalview.renderer.seqfeatures.FeatureColourFinderTest.testFindFeatureColour_gapPosition | 1PASS | ||
|
0.33333334
|
jalview.io.StockholmFileTest.rfamFileIOjalview.io.StockholmFileTest.rfamFileIO | 1PASS | ||
|
0.33333334
|
jalview.gui.QuitHandlerTest.testWaitForSaveQuitjalview.gui.QuitHandlerTest.testWaitForSaveQuit | 1PASS | ||
|
0.33333334
|
jalview.workers.AlignCaclManager2Test.testDisableWorkerjalview.workers.AlignCaclManager2Test.testDisableWorker | 1PASS | ||
|
0.33333334
|
jalview.util.FileUtilsTest.testJavaFileGlobjalview.util.FileUtilsTest.testJavaFileGlob | 1PASS | ||
|
0.33333334
|
jalview.io.StockholmFileTest.stockholmFileRnaSSSpaceCharsjalview.io.StockholmFileTest.stockholmFileRnaSSSpaceChars | 1PASS | ||
|
0.33333334
|
jalview.ws.dbsources.EBIAlphaFoldTest.checkImportPAEToStructurejalview.ws.dbsources.EBIAlphaFoldTest.checkImportPAEToStructure | 1PASS | ||
|
0.33333334
|
jalview.io.TCoffeeScoreFileTest.testHeightAndWidthWithResidueNumbersjalview.io.TCoffeeScoreFileTest.testHeightAndWidthWithResidueNumbers | 1PASS | ||
|
0.33333334
|
jalview.gui.StructureChooserTest.populateFilterComboBoxTestjalview.gui.StructureChooserTest.populateFilterComboBoxTest | 1PASS | ||
|
0.33333334
|
jalview.ws.SequenceFetcherTest.testNoDuplicatesInFetchDbRefsjalview.ws.SequenceFetcherTest.testNoDuplicatesInFetchDbRefs | 1PASS | ||
|
0.33333334
|
jalview.project.Jalview2xmlTests.testStoreAndRecoverGeneLocusjalview.project.Jalview2xmlTests.testStoreAndRecoverGeneLocus | 1PASS | ||
|
0.33333334
|
jalview.util.FileUtilsTest.stringGetBaseAndExtensionTestjalview.util.FileUtilsTest.stringGetBaseAndExtensionTest | 1PASS | ||
|
0.33333334
|
jalview.renderer.seqfeatures.FeatureRendererTest.testFindComplementFeaturesAtResiduejalview.renderer.seqfeatures.FeatureRendererTest.testFindComplementFeaturesAtResidue | 1PASS | ||
|
0.33333334
|
jalview.util.MappingUtilsTest.testMapSequenceGroup_regionjalview.util.MappingUtilsTest.testMapSequenceGroup_region | 1PASS | ||
|
0.33333334
|
jalview.util.QuickSortTest.testCharSortByFloatjalview.util.QuickSortTest.testCharSortByFloat | 1PASS | ||
|
0.33333334
|
jalview.gui.AlignmentPanelTest.testPrintWrappedAlignmentjalview.gui.AlignmentPanelTest.testPrintWrappedAlignment | 1PASS | ||
|
0.33333334
|
jalview.bin.CommandsTest2.do_structureOpeningArgsTestjalview.bin.CommandsTest2.do_structureOpeningArgsTest | 1PASS | ||
|
0.33333334
|
jalview.viewmodel.OverviewDimensionsHideHiddenTest.testPositionInBoxjalview.viewmodel.OverviewDimensionsHideHiddenTest.testPositionInBox | 1PASS | ||
|
0.33333334
|
jalview.bin.CommandsTest2.do_network_structureOpeningArgsTestjalview.bin.CommandsTest2.do_network_structureOpeningArgsTest | 1PASS | ||
|
0.33333334
|
jalview.util.matcher.MatcherTest.testMatches_longjalview.util.matcher.MatcherTest.testMatches_long | 1PASS | ||
|
0.33333334
|
jalview.viewmodel.OverviewDimensionsHideHiddenTest.testSetBoxFromViewportHiddenRowsAtEndjalview.viewmodel.OverviewDimensionsHideHiddenTest.testSetBoxFromViewportHiddenRowsAtEnd | 1PASS | ||
|
0.33333334
|
jalview.bin.CommandsTest2.do_structureOpeningArgsTestjalview.bin.CommandsTest2.do_structureOpeningArgsTest | 1PASS | ||
|
0.33333334
|
jalview.io.StockholmFileTest.testAnnotationEquivalencejalview.io.StockholmFileTest.testAnnotationEquivalence | 1PASS | ||
|
0.33333334
|
jalview.gui.QuitHandlerTest.testUnsavedChangesjalview.gui.QuitHandlerTest.testUnsavedChanges | 1PASS | ||
|
0.33333334
|
jalview.viewmodel.styles.ViewStyleTest.testCopyConstructorjalview.viewmodel.styles.ViewStyleTest.testCopyConstructor | 1PASS | ||
|
0.33333334
|
jalview.renderer.seqfeatures.FeatureRendererTest.testFindAllFeaturesjalview.renderer.seqfeatures.FeatureRendererTest.testFindAllFeatures | 1PASS | ||
|
0.33333334
|
jalview.util.FileUtilsTest.testJavaFileGlobjalview.util.FileUtilsTest.testJavaFileGlob | 1PASS | ||
|
0.33333334
|
jalview.project.Jalview2xmlTests.testSaveAndLoadAnnotationsPropertiesjalview.project.Jalview2xmlTests.testSaveAndLoadAnnotationsProperties | 1PASS | ||
|
0.33333334
|
jalview.gui.AlignViewportTest.testSetGetHasSearchResultsjalview.gui.AlignViewportTest.testSetGetHasSearchResults | 1PASS | ||
|
0.33333334
|
jalview.project.Jalview2xmlTests.testPcaViewAssociationjalview.project.Jalview2xmlTests.testPcaViewAssociation | 1PASS | ||
|
0.33333334
|
jalview.workers.AlignCaclManager2Test.testCancelWorkerjalview.workers.AlignCaclManager2Test.testCancelWorker | 1PASS | ||
|
0.33333334
|
jalview.viewmodel.OverviewDimensionsHideHiddenTest.testFromMouseWithHiddenRowsAtEndjalview.viewmodel.OverviewDimensionsHideHiddenTest.testFromMouseWithHiddenRowsAtEnd | 1PASS | ||
|
0.33333334
|
jalview.util.FileUtilsTest.testJavaFileGlobjalview.util.FileUtilsTest.testJavaFileGlob | 1PASS | ||
|
0.33333334
|
jalview.workers.AlignCaclManager2Test.testRestartCompletedWorkersjalview.workers.AlignCaclManager2Test.testRestartCompletedWorkers | 1PASS | ||
|
0.33333334
|
jalview.project.Jalview2xmlTests.testStoreAndRecoverAnnotationRowElementColoursjalview.project.Jalview2xmlTests.testStoreAndRecoverAnnotationRowElementColours | 1PASS | ||
|
0.33333334
|
jalview.util.FileUtilsTest.testJavaFileGlobjalview.util.FileUtilsTest.testJavaFileGlob | 1PASS | ||
|
0.33333334
|
jalview.bin.CommandsTest2.do_structureOpeningArgsTestjalview.bin.CommandsTest2.do_structureOpeningArgsTest | 1PASS | ||
|
0.33333334
|
jalview.util.MappingUtilsTest.testMapColumnSelection_proteinToDnajalview.util.MappingUtilsTest.testMapColumnSelection_proteinToDna | 1PASS | ||
|
0.33333334
|
jalview.gui.structurechooser.ThreeDBStructureChooserQuerySourceTest.testCollectSelectedRowsjalview.gui.structurechooser.ThreeDBStructureChooserQuerySourceTest.testCollectSelectedRows | 1PASS | ||
|
0.33333334
|
jalview.project.Jalview2xmlTests.testPAEsaveRestorejalview.project.Jalview2xmlTests.testPAEsaveRestore | 1PASS | ||
|
0.33333334
|
jalview.ext.jmol.JmolParserTest.testAlignmentLoaderjalview.ext.jmol.JmolParserTest.testAlignmentLoader | 1PASS | ||
|
0.33333334
|
jalview.gui.AlignViewportTest.testDeregisterMapping_withReferencejalview.gui.AlignViewportTest.testDeregisterMapping_withReference | 1PASS | ||
|
0.33333334
|
jalview.util.FileUtilsTest.stringGetBaseAndExtensionTestjalview.util.FileUtilsTest.stringGetBaseAndExtensionTest | 1PASS | ||
|
0.33333334
|
jalview.bin.CommandsTest2.do_structureOpeningArgsTestjalview.bin.CommandsTest2.do_structureOpeningArgsTest | 1PASS | ||
|
0.33333334
|
jalview.util.FileUtilsTest.getMatchingVersionedFilesTestjalview.util.FileUtilsTest.getMatchingVersionedFilesTest | 1PASS | ||
|
0.33333334
|
jalview.io.gff.ExonerateHelperTest.testAddExonerateGffToAlignmentjalview.io.gff.ExonerateHelperTest.testAddExonerateGffToAlignment | 1PASS | ||
|
0.33333334
|
jalview.util.FileUtilsTest.testJavaFileGlobjalview.util.FileUtilsTest.testJavaFileGlob | 1PASS | ||
|
0.33333334
|
jalview.io.StockholmFileTest.pfamFileDataExtractionjalview.io.StockholmFileTest.pfamFileDataExtraction | 1PASS | ||
|
0.33333334
|
jalview.io.FeaturesFileTest.testParse_pureGff3jalview.io.FeaturesFileTest.testParse_pureGff3 | 1PASS | ||
|
0.33333334
|
jalview.project.Jalview2xmlTests.testStoreAndRecoverNoOverviewjalview.project.Jalview2xmlTests.testStoreAndRecoverNoOverview | 1PASS | ||
|
0.33333334
|
jalview.gui.QuitHandlerTest.testNoGUIUnsavedChangesjalview.gui.QuitHandlerTest.testNoGUIUnsavedChanges | 1PASS | ||
|
0.33333334
|
jalview.bin.CommandsTest.allLinkedIdsTestjalview.bin.CommandsTest.allLinkedIdsTest | 1PASS | ||
|
0.33333334
|
jalview.project.Jalview2xmlTests.testMergeDatasetsforManyViewsjalview.project.Jalview2xmlTests.testMergeDatasetsforManyViews | 1PASS | ||
|
0.33333334
|
jalview.viewmodel.OverviewDimensionsHideHiddenTest.testDraggingjalview.viewmodel.OverviewDimensionsHideHiddenTest.testDragging | 1PASS | ||
|
0.33333334
|
jalview.project.Jalview2xmlTests.testStoreAndRecoverOverviewjalview.project.Jalview2xmlTests.testStoreAndRecoverOverview | 1PASS | ||
|
0.33333334
|
jalview.util.FileUtilsTest.stringGetBaseAndExtensionTestjalview.util.FileUtilsTest.stringGetBaseAndExtensionTest | 1PASS | ||
|
0.33333334
|
jalview.viewmodel.OverviewDimensionsShowHiddenTest.testDraggingjalview.viewmodel.OverviewDimensionsShowHiddenTest.testDragging | 1PASS | ||
|
0.33333334
|
jalview.io.FeaturesFileTest.testPrintJalviewFormat_withFiltersjalview.io.FeaturesFileTest.testPrintJalviewFormat_withFilters | 1PASS | ||
|
0.33333334
|
jalview.project.Jalview2xmlTests.testCopyViewSettingsjalview.project.Jalview2xmlTests.testCopyViewSettings | 1PASS | ||
|
0.33333334
|
jalview.viewmodel.OverviewDimensionsHideHiddenTest.testSetBoxFromViewportHiddenColsAtStartjalview.viewmodel.OverviewDimensionsHideHiddenTest.testSetBoxFromViewportHiddenColsAtStart | 1PASS | ||
|
0.33333334
|
jalview.io.StockholmFileTest.curlyWUSSsecondaryStructureForRNASequencejalview.io.StockholmFileTest.curlyWUSSsecondaryStructureForRNASequence | 1PASS | ||
|
0.33333334
|
jalview.bin.CommandsTest.argFilesGlobAndSubstitutionsTestjalview.bin.CommandsTest.argFilesGlobAndSubstitutionsTest | 1PASS | ||
|
0.33333334
|
jalview.gui.structurechooser.StructureChooserQuerySourceTest.buildThreeDBQueryTestjalview.gui.structurechooser.StructureChooserQuerySourceTest.buildThreeDBQueryTest | 1PASS | ||
|
0.33333334
|
jalview.gui.AlignViewportTest.testUpdateConservation_qualityOnlyjalview.gui.AlignViewportTest.testUpdateConservation_qualityOnly | 1PASS | ||
|
0.33333334
|
jalview.io.JSONFileTest.testGrpParsed_colourNonejalview.io.JSONFileTest.testGrpParsed_colourNone | 1PASS | ||
|
0.33333334
|
jalview.project.Jalview2xmlTests.testStoreAndRecoverReferenceSeqSettingsjalview.project.Jalview2xmlTests.testStoreAndRecoverReferenceSeqSettings | 1PASS | ||
|
0.33333334
|
jalview.util.FileUtilsTest.convertWildcardsToPathTestjalview.util.FileUtilsTest.convertWildcardsToPathTest | 1PASS | ||
|
0.33333334
|
jalview.util.FileUtilsTest.stringGetBaseAndExtensionTestjalview.util.FileUtilsTest.stringGetBaseAndExtensionTest | 1PASS | ||
|
0.33333334
|
jalview.gui.structurechooser.StructureChooserQuerySourceTest.cascadingThreeDBandPDBQuerysjalview.gui.structurechooser.StructureChooserQuerySourceTest.cascadingThreeDBandPDBQuerys | 1PASS | ||
|
0.33333334
|
jalview.io.TCoffeeScoreFileTest.testHeightAndWidthjalview.io.TCoffeeScoreFileTest.testHeightAndWidth | 1PASS | ||
|
0.33333334
|
jalview.structure.StructureSelectionManagerTest.testSaveAnnotationProviderjalview.structure.StructureSelectionManagerTest.testSaveAnnotationProvider | 1PASS | ||
|
0.33333334
|
jalview.gui.JvOptionPaneTest.showInternalConfirmDialogFamilyTestjalview.gui.JvOptionPaneTest.showInternalConfirmDialogFamilyTest | 1PASS | ||
|
0.33333334
|
jalview.project.Jalview2xmlTests.testAutoShowOverviewForLegacyProjectsjalview.project.Jalview2xmlTests.testAutoShowOverviewForLegacyProjects | 1PASS | ||
|
0.33333334
|
jalview.gui.ProgressBarTest.testConstructor_wrongLayoutjalview.gui.ProgressBarTest.testConstructor_wrongLayout | 1PASS | ||
|
0.33333334
|
jalview.io.CrossRef2xmlTests.openCrossrefsForEnsemblTwicejalview.io.CrossRef2xmlTests.openCrossrefsForEnsemblTwice | 1PASS | ||
|
0.33333334
|
jalview.io.cache.JvCacheableInputBoxTest.updateCacheTestjalview.io.cache.JvCacheableInputBoxTest.updateCacheTest | 1PASS | ||
|
0.33333334
|
jalview.bin.CommandsTest.argFilesGlobAndSubstitutionsTestjalview.bin.CommandsTest.argFilesGlobAndSubstitutionsTest | 1PASS | ||
|
0.33333334
|
jalview.viewmodel.OverviewDimensionsShowHiddenTest.testSetBoxFromViewportHiddenColsInMiddlejalview.viewmodel.OverviewDimensionsShowHiddenTest.testSetBoxFromViewportHiddenColsInMiddle | 1PASS | ||
|
0.33333334
|
jalview.project.Jalview2xmlTests.testStoreAndRecoverGroupRepSeqsjalview.project.Jalview2xmlTests.testStoreAndRecoverGroupRepSeqs | 1PASS | ||
|
0.33333334
|
jalview.schemes.PIDColourSchemeTest.testFindColour_ignoreGapsjalview.schemes.PIDColourSchemeTest.testFindColour_ignoreGaps | 1PASS | ||
|
0.33333334
|
jalview.gui.QuitHandlerTest.testSavedAlignmentChangesjalview.gui.QuitHandlerTest.testSavedAlignmentChanges | 1PASS | ||
|
0.33333334
|
jalview.gui.AlignViewportTest.testGetConsensusSeqjalview.gui.AlignViewportTest.testGetConsensusSeq | 1PASS | ||
|
0.33333334
|
jalview.bin.CommandsTest.allLinkedIdsTestjalview.bin.CommandsTest.allLinkedIdsTest | 1PASS | ||
|
0.33333334
|
jalview.gui.AlignViewportTest.testShowOrDontShowOccupancyjalview.gui.AlignViewportTest.testShowOrDontShowOccupancy | 1PASS | ||
|
0.33333334
|
jalview.structure.StructureSelectionManagerTest.testSaveAnnotationProviderjalview.structure.StructureSelectionManagerTest.testSaveAnnotationProvider | 1PASS | ||
|
0.33333334
|
jalview.bin.CommandsTest2.do_structureOpeningArgsTestjalview.bin.CommandsTest2.do_structureOpeningArgsTest | 1PASS | ||
|
0.33333334
|
jalview.io.TCoffeeScoreFileTest.testWrongFilejalview.io.TCoffeeScoreFileTest.testWrongFile | 1PASS | ||
|
0.33333334
|
jalview.gui.DesktopTests.testInternalCopyPastejalview.gui.DesktopTests.testInternalCopyPaste | 1PASS | ||
|
0.33333334
|
jalview.gui.AnnotationLabelsTest2.testIdWidthChangesjalview.gui.AnnotationLabelsTest2.testIdWidthChanges | 1PASS | ||
|
0.33333334
|
jalview.util.FileUtilsTest.testJavaFileGlobjalview.util.FileUtilsTest.testJavaFileGlob | 1PASS | ||
|
0.33333334
|
jalview.project.Jalview2xmlTests.testTCoffeeScoresjalview.project.Jalview2xmlTests.testTCoffeeScores | 1PASS | ||
|
0.33333334
|
jalview.workers.AlignCaclManager2Test.testCancelOneShotWorkerjalview.workers.AlignCaclManager2Test.testCancelOneShotWorker | 1PASS | ||
|
0.33333334
|
jalview.bin.CommandsTest2.do_structureOpeningArgsTestjalview.bin.CommandsTest2.do_structureOpeningArgsTest | 1PASS | ||
|
0.33333334
|
jalview.bin.CommandsTest2.do_structureOpeningArgsTestjalview.bin.CommandsTest2.do_structureOpeningArgsTest | 1PASS | ||
|
0.33333334
|
jalview.ext.jmol.JmolParserTest.testFileParserjalview.ext.jmol.JmolParserTest.testFileParser | 1PASS | ||
|
0.33333334
|
jalview.gui.structurechooser.StructureChooserQuerySourceTest.cascadingThreeDBandPDBQuerysjalview.gui.structurechooser.StructureChooserQuerySourceTest.cascadingThreeDBandPDBQuerys | 1PASS | ||
|
0.33333334
|
jalview.workers.AlignCaclManager2Test.testRestartCancelsWorkersjalview.workers.AlignCaclManager2Test.testRestartCancelsWorkers | 1PASS | ||
|
0.33333334
|
jalview.viewmodel.OverviewDimensionsHideHiddenTest.testSetBoxFromMouseClickjalview.viewmodel.OverviewDimensionsHideHiddenTest.testSetBoxFromMouseClick | 1PASS | ||
|
0.33333334
|
jalview.gui.AnnotationLabelsTest.testDrawLabelsjalview.gui.AnnotationLabelsTest.testDrawLabels | 1PASS | ||
|
0.33333334
|
jalview.gui.PopupMenuTest.testHideInsertionsjalview.gui.PopupMenuTest.testHideInsertions | 1PASS | ||
|
0.33333334
|
jalview.io.FeaturesFileTest.testParse_mixedJalviewGffjalview.io.FeaturesFileTest.testParse_mixedJalviewGff | 1PASS | ||
|
0.33333334
|
jalview.bin.CommandsTest2.do_structureOpeningArgsTestjalview.bin.CommandsTest2.do_structureOpeningArgsTest | 1PASS | ||
|
0.33333334
|
jalview.bin.CommandsTest2.do_network_structureOpeningArgsTestjalview.bin.CommandsTest2.do_network_structureOpeningArgsTest | 1PASS | ||
|
0.33333334
|
jalview.workers.AlignCaclManager2Test.testRestartDisabledWorkerjalview.workers.AlignCaclManager2Test.testRestartDisabledWorker | 1PASS |
| 1 | /* | ||||||
| 2 | * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$) | ||||||
| 3 | * Copyright (C) $$Year-Rel$$ The Jalview Authors | ||||||
| 4 | * | ||||||
| 5 | * This file is part of Jalview. | ||||||
| 6 | * | ||||||
| 7 | * Jalview is free software: you can redistribute it and/or | ||||||
| 8 | * modify it under the terms of the GNU General Public License | ||||||
| 9 | * as published by the Free Software Foundation, either version 3 | ||||||
| 10 | * of the License, or (at your option) any later version. | ||||||
| 11 | * | ||||||
| 12 | * Jalview is distributed in the hope that it will be useful, but | ||||||
| 13 | * WITHOUT ANY WARRANTY; without even the implied warranty | ||||||
| 14 | * of MERCHANTABILITY or FITNESS FOR A PARTICULAR | ||||||
| 15 | * PURPOSE. See the GNU General Public License for more details. | ||||||
| 16 | * | ||||||
| 17 | * You should have received a copy of the GNU General Public License | ||||||
| 18 | * along with Jalview. If not, see <http://www.gnu.org/licenses/>. | ||||||
| 19 | * The Jalview Authors are detailed in the 'AUTHORS' file. | ||||||
| 20 | */ | ||||||
| 21 | package jalview.ws.jws2; | ||||||
| 22 | |||||||
| 23 | import jalview.gui.AlignFrame; | ||||||
| 24 | import jalview.ws.api.ServiceWithParameters; | ||||||
| 25 | import jalview.ws.params.ArgumentI; | ||||||
| 26 | import jalview.ws.params.WsParamSetI; | ||||||
| 27 | import java.util.List; | ||||||
| 28 | |||||||
| 29 | import javax.swing.JMenu; | ||||||
| 30 | |||||||
| 31 | /** | ||||||
| 32 | * provides metadata for a jabaws2 service instance - resolves names, etc. | ||||||
| 33 | * | ||||||
| 34 | * @author JimP | ||||||
| 35 | * | ||||||
| 36 | */ | ||||||
|
|||||||
| 37 | public abstract class Jws2Client extends jalview.ws.WSClient | ||||||
| 38 | { | ||||||
| 39 | /** | ||||||
| 40 | * instantiate a new service client. preset and arguments are assumed to be | ||||||
| 41 | * valid for the service | ||||||
| 42 | * | ||||||
| 43 | * @param _alignFrame | ||||||
| 44 | * @param preset | ||||||
| 45 | * @param arguments | ||||||
| 46 | */ | ||||||
| 47 | |||||||
|
|||||||
| 48 | 0 | public Jws2Client(AlignFrame _alignFrame, WsParamSetI preset,... |
|||||
| 49 | List<ArgumentI> arguments) | ||||||
| 50 | { | ||||||
| 51 | 0 | super(_alignFrame, preset, arguments); | |||||
| 52 | |||||||
| 53 | } | ||||||
| 54 | |||||||
|
|||||||
| 55 | 25969 | public Jws2Client()... |
|||||
| 56 | { | ||||||
| 57 | // anonymous constructor - used for headless method calls only | ||||||
| 58 | } | ||||||
| 59 | |||||||
| 60 | |||||||
| 61 | /* | ||||||
| 62 | * Jws2Instance serviceHandle; (non-Javadoc) | ||||||
| 63 | * | ||||||
| 64 | * @see jalview.ws.WSMenuEntryProviderI#attachWSMenuEntry(javax.swing.JMenu, | ||||||
| 65 | * jalview.gui.AlignFrame) | ||||||
| 66 | * | ||||||
| 67 | * @Override public void attachWSMenuEntry(JMenu wsmenu, AlignFrame | ||||||
| 68 | * alignFrame) { if (serviceHandle==null) { throw new | ||||||
| 69 | * Error("Implementation error: No service handle for this Jws2 service."); } | ||||||
| 70 | * attachWSMenuEntry(wsmenu, serviceHandle, alignFrame); } | ||||||
| 71 | */ | ||||||
| 72 | /** | ||||||
| 73 | * add the menu item for a particular jws2 service instance | ||||||
| 74 | * | ||||||
| 75 | * @param wsmenu | ||||||
| 76 | * @param service | ||||||
| 77 | * @param alignFrame | ||||||
| 78 | */ | ||||||
| 79 | abstract void attachWSMenuEntry(JMenu wsmenu, | ||||||
| 80 | final ServiceWithParameters service, | ||||||
| 81 | final AlignFrame alignFrame); | ||||||
| 82 | |||||||
| 83 | |||||||
| 84 | } |
