|
jalview.ws.params.ParamDatastoreI
jalview.ws.params.ParamDatastoreI
|
1.0100%
|
|
|
jalview.datamodel.AlignmentAnnotation.AnnotCharSequence
jalview.datamodel.AlignmentAnnotation.AnnotCharSequence
|
0.925925992.6%
|
|
|
com.stevesoft.pat.SubMark
com.stevesoft.pat.SubMark
|
0.880%
|
|
|
jalview.ws.SequenceFetcher
jalview.ws.SequenceFetcher
|
0.6470588464.7%
|
|
|
com.stevesoft.pat.wrap.StringWrap
com.stevesoft.pat.wrap.StringWrap
|
0.62562.5%
|
|
|
com.stevesoft.pat.Skip2
com.stevesoft.pat.Skip2
|
0.518518551.9%
|
|
|
com.stevesoft.pat.FastChar
com.stevesoft.pat.FastChar
|
0.550%
|
|
|
com.stevesoft.pat.OrMark
com.stevesoft.pat.OrMark
|
0.550%
|
|
|
jalview.analysis.SecStrConsensus.SimpleBP
jalview.analysis.SecStrConsensus.SimpleBP
|
0.550%
|
|
|
jalview.io.AlignFile
jalview.io.AlignFile
|
0.4594594545.9%
|
|
|
com.stevesoft.pat.FastMulti
com.stevesoft.pat.FastMulti
|
0.4444444544.4%
|
|
|
jalview.datamodel.HiddenCursorPosition
jalview.datamodel.HiddenCursorPosition
|
0.4285714342.9%
|
|
|
jalview.analysis.Rna
jalview.analysis.Rna
|
0.41541.5%
|
|
|
jalview.io.StockholmFile
jalview.io.StockholmFile
|
0.4129353241.3%
|
|
|
jalview.ws.jws2.MsaWSClient
jalview.ws.jws2.MsaWSClient
|
0.4013157840.1%
|
|
|
jalview.ws.dbsources.EmblSource
jalview.ws.dbsources.EmblSource
|
0.440%
|
|
|
jalview.log.JalviewAppender
jalview.log.JalviewAppender
|
0.388888938.9%
|
|
|
com.stevesoft.pat.Start
com.stevesoft.pat.Start
|
0.3636363736.4%
|
|
|
jalview.ws2.gui.WebServicesMenuManager
jalview.ws2.gui.WebServicesMenuManager
|
0.363265336.3%
|
|
|
jalview.ws.jws2.PreferredServiceRegistry
jalview.ws.jws2.PreferredServiceRegistry
|
0.3492063634.9%
|
|
|
jalview.bin.ApplicationSingletonProvider
jalview.bin.ApplicationSingletonProvider
|
0.3428571534.3%
|
|
|
jalview.datamodel.AlignmentAnnotation
jalview.datamodel.AlignmentAnnotation
|
0.3364595533.6%
|
|
|
jalview.ws.jws2.Jws2Client
jalview.ws.jws2.Jws2Client
|
0.3333333433.3%
|
|
|
jalview.io.FastaFile
jalview.io.FastaFile
|
0.315315331.5%
|
|
|
com.stevesoft.pat.End
com.stevesoft.pat.End
|
0.3103448231%
|
|
|
jalview.ws2.api.WebService
jalview.ws2.api.WebService
|
0.330%
|
|
|
com.stevesoft.pat.Range
com.stevesoft.pat.Range
|
0.2954545329.5%
|
|
|
jalview.ws.dbsources.EmblCdsSource
jalview.ws.dbsources.EmblCdsSource
|
0.285714328.6%
|
|
|
jalview.gui.JvSwingUtils
jalview.gui.JvSwingUtils
|
0.2827586228.3%
|
|
|
com.stevesoft.pat.DotMulti
com.stevesoft.pat.DotMulti
|
0.275362327.5%
|
|
|
com.stevesoft.pat.Bracket
com.stevesoft.pat.Bracket
|
0.27527.5%
|
|
|
jalview.datamodel.Annotation
jalview.datamodel.Annotation
|
0.2571428725.7%
|
|
|
jalview.ws.jws2.JabaPreset
jalview.ws.jws2.JabaPreset
|
0.2525%
|
|
|
jalview.util.MessageManager
jalview.util.MessageManager
|
0.2380952423.8%
|
|
|
jalview.ws.WSClient
jalview.ws.WSClient
|
0.2352941223.5%
|
|
|
jalview.datamodel.SequenceCursor
jalview.datamodel.SequenceCursor
|
0.2333333323.3%
|
|
|
jalview.ws2.actions.BaseAction
jalview.ws2.actions.BaseAction
|
0.2285714322.9%
|
|
|
jalview.datamodel.Sequence
jalview.datamodel.Sequence
|
0.2133891321.3%
|
|
|
jalview.io.AnnotationFile
jalview.io.AnnotationFile
|
0.2008995620.1%
|
|
|
jalview.util.Comparison
jalview.util.Comparison
|
0.1968503919.7%
|
|
|
jalview.ws.api.ServiceWithParameters
jalview.ws.api.ServiceWithParameters
|
0.187518.8%
|
|
|
jalview.util.Format
jalview.util.Format
|
0.186335418.6%
|
|
|
com.stevesoft.pat.Pattern
com.stevesoft.pat.Pattern
|
0.173611117.4%
|
|
|
com.stevesoft.pat.oneChar
com.stevesoft.pat.oneChar
|
0.1714285817.1%
|
|
|
jalview.io.FileParse
jalview.io.FileParse
|
0.1606648316.1%
|
|
|
jalview.ws.jws1.WS1Client
jalview.ws.jws1.WS1Client
|
0.1616%
|
|
|
jalview.ws.api.UIinfo
jalview.ws.api.UIinfo
|
0.1568627515.7%
|
|
|
jalview.log.JLogger
jalview.log.JLogger
|
0.1428571514.3%
|
|
|
com.stevesoft.pat.Or
com.stevesoft.pat.Or
|
0.1410256514.1%
|
|
|
com.stevesoft.pat.RegRes
com.stevesoft.pat.RegRes
|
0.1304347813%
|
|
|
jalview.log.JLoggerLog4j
jalview.log.JLoggerLog4j
|
0.10679611610.7%
|
|
|
jalview.util.QuickSort
jalview.util.QuickSort
|
0.10355987410.4%
|
|
|
com.stevesoft.pat.patInt
com.stevesoft.pat.patInt
|
0.110%
|
|
|
jalview.ws2.client.jpred4.JPred4WSDiscoverer
jalview.ws2.client.jpred4.JPred4WSDiscoverer
|
0.09523819.5%
|
|
|
jalview.bin.Console
jalview.bin.Console
|
0.089622649%
|
|
|
jalview.datamodel.Alignment
jalview.datamodel.Alignment
|
0.088888898.9%
|
|
|
jalview.ws.dbsources.Xfam
jalview.ws.dbsources.Xfam
|
0.086956528.7%
|
|
|
jalview.ws.jws1.Discoverer
jalview.ws.jws1.Discoverer
|
0.0848484868.5%
|
|
|
jalview.ext.ensembl.EnsemblSequenceFetcher
jalview.ext.ensembl.EnsemblSequenceFetcher
|
0.0833333368.3%
|
|
|
jalview.ws2.client.ebi.JobDispatcherWSDiscoverer
jalview.ws2.client.ebi.JobDispatcherWSDiscoverer
|
0.081632658.2%
|
|
|
com.stevesoft.pat.Regex
com.stevesoft.pat.Regex
|
0.077272737.7%
|
|
|
jalview.ws.jws2.jabaws2.Jws2Instance
jalview.ws.jws2.jabaws2.Jws2Instance
|
0.076923087.7%
|
|
|
jalview.io.AppletFormatAdapter
jalview.io.AppletFormatAdapter
|
0.065217396.5%
|
|
|
jalview.analysis.AlignmentAnnotationUtils
jalview.analysis.AlignmentAnnotationUtils
|
0.063559326.4%
|
|
|
ext.vamsas.ServiceHandle
ext.vamsas.ServiceHandle
|
0.061224496.1%
|
|
|
jalview.ws.seqfetcher.ASequenceFetcher
jalview.ws.seqfetcher.ASequenceFetcher
|
0.0577777775.8%
|
|
|
jalview.datamodel.SequenceFeature
jalview.datamodel.SequenceFeature
|
0.057553965.8%
|
|
|
jalview.ws2.client.api.AbstractWebServiceDiscoverer
jalview.ws2.client.api.AbstractWebServiceDiscoverer
|
0.0566037745.7%
|
|
|
jalview.ws.seqfetcher.DbSourceProxyImpl
jalview.ws.seqfetcher.DbSourceProxyImpl
|
0.0540540555.4%
|
|
|
com.stevesoft.pat.FastBracket
com.stevesoft.pat.FastBracket
|
0.0538922145.4%
|
|
|
jalview.ws2.params.SimpleParamDatastore
jalview.ws2.params.SimpleParamDatastore
|
0.055%
|
|
|
jalview.ws.jws2.JabaParamStore
jalview.ws.jws2.JabaParamStore
|
0.0416666684.2%
|
|
|
jalview.io.FileFormat
jalview.io.FileFormat
|
0.041379314.1%
|
|
|
jalview.ws.jws2.Jws2ClientFactory
jalview.ws.jws2.Jws2ClientFactory
|
0.044%
|
|
|
jalview.ws.dbsources.Pdb
jalview.ws.dbsources.Pdb
|
0.035087723.5%
|
|
|
jalview.bin.Cache
jalview.bin.Cache
|
0.0311653113.1%
|
|
|
jalview.util.StringUtils
jalview.util.StringUtils
|
0.0310734453.1%
|
|
|
jalview.ws.jws1.JPredClient
jalview.ws.jws1.JPredClient
|
0.0310559013.1%
|
|
|
com.stevesoft.pat.Skip
com.stevesoft.pat.Skip
|
0.0270270282.7%
|
|
|
jalview.ws2.client.slivka.SlivkaWSDiscoverer
jalview.ws2.client.slivka.SlivkaWSDiscoverer
|
0.0268456382.7%
|
|
|
jalview.gui.AlignFrame
jalview.gui.AlignFrame
|
0.0266207332.7%
|
|
|
jalview.ws.jws2.Jws2Discoverer
jalview.ws.jws2.Jws2Discoverer
|
0.0224358982.2%
|
|
|
jalview.util.DBRefUtils
jalview.util.DBRefUtils
|
0.0208333342.1%
|
|
|
jalview.datamodel.HiddenColumnsCursor
jalview.datamodel.HiddenColumnsCursor
|
0.0156251.6%
|
|
|
jalview.ws.dbsources.Uniprot
jalview.ws.dbsources.Uniprot
|
0.015325671.5%
|
|
|
jalview.datamodel.features.SequenceFeatures
jalview.datamodel.features.SequenceFeatures
|
0.0127388541.3%
|
|
|
jalview.util.Platform
jalview.util.Platform
|
0.0123762381.2%
|
|
|
jalview.datamodel.HiddenSequences
jalview.datamodel.HiddenSequences
|
0.009132420.9%
|
|
|
jalview.ext.ensembl.EnsemblGene
jalview.ext.ensembl.EnsemblGene
|
0.0081632650.8%
|
|
|
jalview.schemes.ResidueProperties
jalview.schemes.ResidueProperties
|
0.00772797550.8%
|
|
|
jalview.datamodel.HiddenColumns
jalview.datamodel.HiddenColumns
|
0.00235849060.2%
|
|
|
jalview.viewmodel.AlignmentViewport
jalview.viewmodel.AlignmentViewport
|
0.00126582280.1%
|
|
