Classes

Class	Line #	Total Statements	Complexity	TOTAL Coverage	Actions
AnnotationServiceGuiHandler	15	21	12	0.00%	Show methods

Class AnnotationServiceGuiHandler

Class AnnotationServiceGuiHandler	Line # 15	Total Statements 21	Complexity 12	TOTAL Coverage 0.00%
AnnotationServiceGuiHandler(AnnotationAction,AlignFrame)   AnnotationServiceGuiHandler(AnnotationAction,AlignFrame)	2828	4.04	1.01	0.0 0.00%
cancelActivity(long) : boolean   cancelActivity(long) : boolean	4343	2.02	1.01	0.0 0.00%
canCancel() : boolean   canCancel() : boolean	5050	1.01	1.01	0.0 0.00%
workerStarted(AlignCalcWorkerAdapter) : void   workerStarted(AlignCalcWorkerAdapter) : void	3636	2.02	1.01	0.0 0.00%
workerStopped(AlignCalcWorkerAdapter) : void   workerStopped(AlignCalcWorkerAdapter) : void	5858	1.01	1.01	0.0 0.00%
getFeatureColour(String) : FeatureColourI   getFeatureColour(String) : FeatureColourI	7373	1.01	1.01	0.0 0.00%
getFeatureFilters(String) : FeatureMatcherSetI   getFeatureFilters(String) : FeatureMatcherSetI	7979	1.01	1.01	0.0 0.00%
isFeatureDisplayed(String) : boolean   isFeatureDisplayed(String) : boolean	8585	1.01	1.01	0.0 0.00%
workerHasResult(AlignCalcWorkerAdapter,AnnotationResult) : void   workerHasResult(AlignCalcWorkerAdapter,AnnotationResult) : void	6464	8.08	4.04	0.0 0.00%

 

Contributing tests

Source view

1		package jalview.ws2.gui;
2
3		import jalview.api.FeatureColourI;
4		import jalview.datamodel.features.FeatureMatcherSetI;
5		import jalview.gui.AlignFrame;
6		import jalview.gui.AlignmentPanel;
7		import jalview.gui.IProgressIndicator;
8		import jalview.gui.IProgressIndicatorHandler;
9		import jalview.schemes.FeatureSettingsAdapter;
10		import jalview.util.MathUtils;
11		import jalview.ws2.actions.annotation.AlignCalcWorkerAdapter;
12		import jalview.ws2.actions.annotation.AnnotationAction;
13		import jalview.ws2.actions.annotation.AnnotationResult;
14
		0% Uncovered Elements: 36 (36) Complexity: 12 Complexity Density: 0.57
15		public class AnnotationServiceGuiHandler
16		implements AlignCalcWorkerAdapter.WorkerListener
17		{
18		private final long progressId = MathUtils.getUID();
19
20		private final AlignFrame alignFrame;
21
22		private final AlignmentPanel alignPanel;
23
24		private final IProgressIndicator progressIndicator;
25
26		private final AnnotationAction action;
27
		0% Uncovered Elements: 4 (4) Complexity: 1 Complexity Density: 0.25
28	0	public AnnotationServiceGuiHandler(AnnotationAction action, AlignFrame frame)...
29		{
30	0	this.alignFrame = frame;
31	0	this.alignPanel = frame.alignPanel;
32	0	this.progressIndicator = frame;
33	0	this.action = action;
34		}
35
		0% Uncovered Elements: 2 (2) Complexity: 1 Complexity Density: 0.5
36	0	@Override...
37		public void workerStarted(AlignCalcWorkerAdapter source)
38		{
39	0	progressIndicator.addProgressBar(progressId, action.getFullName());
40	0	progressIndicator.registerHandler(progressId,
41		new IProgressIndicatorHandler()
42		{
		0% Uncovered Elements: 2 (2) Complexity: 1 Complexity Density: 0.5
43	0	@Override...
44		public boolean cancelActivity(long id)
45		{
46	0	source.cancel();
47	0	return true;
48		}
49
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
50	0	@Override...
51		public boolean canCancel()
52		{
53	0	return true;
54		}
55		});
56		}
57
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
58	0	@Override...
59		public void workerStopped(AlignCalcWorkerAdapter source)
60		{
61	0	progressIndicator.removeProgressBar(progressId);
62		}
63
		0% Uncovered Elements: 14 (14) Complexity: 4 Complexity Density: 0.5
64	0	@Override...
65		public void workerHasResult(AlignCalcWorkerAdapter source, final AnnotationResult result)
66		{
67	0	if (result == null)
68	0	return;
69	0	if (result.getHasFeatures())
70		{
71	0	alignFrame.getViewport().applyFeaturesStyle(new FeatureSettingsAdapter()
72		{
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
73	0	@Override...
74		public FeatureColourI getFeatureColour(String type)
75		{
76	0	return result.getFeatureColours().get(type);
77		}
78
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
79	0	@Override...
80		public FeatureMatcherSetI getFeatureFilters(String type)
81		{
82	0	return result.getFeatureFilters().get(type);
83		}
84
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
85	0	@Override...
86		public boolean isFeatureDisplayed(String type)
87		{
88	0	return result.getFeatureColours().containsKey(type);
89		}
90		});
91	0	if (alignFrame.alignPanel == alignPanel)
92		{
93	0	alignFrame.getViewport().setShowSequenceFeatures(true);
94	0	alignFrame.setMenusForViewport();
95		}
96		}
97	0	alignPanel.adjustAnnotationHeight();
98		}
99		}