Classes

Class	Line #	Total Statements	Complexity	TOTAL Coverage	Actions
JabaWsParamTest	23	90	33	0.00%	Show methods

Class JabaWsParamTest

Class JabaWsParamTest	Line # 23	Total Statements 90	Complexity 33	TOTAL Coverage 0.00%
windowActivated(WindowEvent) : void   windowActivated(WindowEvent) : void	196196	0.00	1.01	-1.0 -1.0 -
windowClosed(WindowEvent) : void   windowClosed(WindowEvent) : void	203203	0.00	1.01	-1.0 -1.0 -
windowClosing(WindowEvent) : void   windowClosing(WindowEvent) : void	208208	1.01	1.01	0.0 0.00%
windowDeactivated(WindowEvent) : void   windowDeactivated(WindowEvent) : void	215215	0.00	1.01	-1.0 -1.0 -
windowDeiconified(WindowEvent) : void   windowDeiconified(WindowEvent) : void	222222	0.00	1.01	-1.0 -1.0 -
windowIconified(WindowEvent) : void   windowIconified(WindowEvent) : void	229229	0.00	1.01	-1.0 -1.0 -
windowOpened(WindowEvent) : void   windowOpened(WindowEvent) : void	236236	0.00	1.01	-1.0 -1.0 -
main(String[]) : void   main(String[]) : void	3131	89.089	26.026	0.0 0.00%

 

Contributing tests

Source view

1		package jalview.ws.jws2;
2
3		import jalview.gui.WsJobParameters;
4		import jalview.util.MessageManager;
5		import jalview.ws.api.ServiceWithParameters;
6		import jalview.ws.jws2.jabaws2.Jws2Instance;
7
8		import java.awt.BorderLayout;
9		import java.awt.event.WindowEvent;
10		import java.awt.event.WindowListener;
11		import java.util.Iterator;
12		import java.util.List;
13		import java.util.Vector;
14
15		import javax.swing.JFrame;
16		import javax.swing.JPanel;
17
18		import compbio.metadata.Option;
19		import compbio.metadata.Parameter;
20		import compbio.metadata.Preset;
21		import compbio.metadata.PresetManager;
22
		0% Uncovered Elements: 128 (128) Complexity: 33 Complexity Density: 0.37
23		public class JabaWsParamTest
24		{
25
26		/**
27		* testing method - grab a service and parameter set and show the window
28		*
29		* @param args
30		*/
		0% Uncovered Elements: 119 (119) Complexity: 26 Complexity Density: 0.29
31	0	public static void main(String[] args)...
32		{
33	0	jalview.ws.jws2.Jws2Discoverer disc = jalview.ws.jws2.Jws2Discoverer
34		.getInstance();
35	0	int p = 0;
36	0	if (args.length > 0)
37		{
38	0	Vector<String> services = new Vector<>();
39	0	services.addElement(args[p++]);
40	0	Jws2Discoverer.getInstance().setServiceUrls(services);
41		}
42	0	try
43		{
44	0	disc.run();
45		} catch (Exception e)
46		{
47	0	System.err.println("Aborting. Problem discovering services.");
48	0	e.printStackTrace();
49	0	return;
50		}
51	0	Jws2Instance lastserv = null;
52	0	for (ServiceWithParameters service : disc.getServices())
53		{
54		// this will fail for non-JABAWS services !
55	0	lastserv = (Jws2Instance) service;
56	0	if (p >= args.length || service.getName().equalsIgnoreCase(args[p]))
57		{
58	0	if (lastserv != null)
59		{
60	0	List<Preset> prl = null;
61	0	Preset pr = null;
62	0	if (++p < args.length)
63		{
64	0	PresetManager prman = lastserv.getPresets();
65	0	if (prman != null)
66		{
67	0	pr = prman.getPresetByName(args[p]);
68	0	if (pr == null)
69		{
70		// just grab the last preset.
71	0	prl = prman.getPresets();
72		}
73		}
74		}
75		else
76		{
77	0	PresetManager prman = lastserv.getPresets();
78	0	if (prman != null)
79		{
80	0	prl = prman.getPresets();
81		}
82		}
83	0	Iterator<Preset> en = (prl == null) ? null : prl.iterator();
84	0	while (en != null && en.hasNext())
85		{
86	0	if (en != null)
87		{
88	0	if (!en.hasNext())
89		{
90	0	en = prl.iterator();
91		}
92	0	pr = en.next();
93		}
94		{
95	0	System.out.println("Testing opts dupes for "
96		+ lastserv.getUri() + " : " + lastserv.getActionText()
97		+ ":" + pr.getName());
98	0	List<Option> rg = lastserv.getRunnerConfig().getOptions();
99	0	for (Option o : rg)
100		{
101	0	try
102		{
103	0	Option cpy = jalview.ws.jws2.ParameterUtils.copyOption(o);
104		} catch (Exception e)
105		{
106	0	System.err.println("Failed to copy " + o.getName());
107	0	e.printStackTrace();
108		} catch (Error e)
109		{
110	0	System.err.println("Failed to copy " + o.getName());
111	0	e.printStackTrace();
112		}
113		}
114		}
115		{
116	0	System.out.println("Testing param dupes:");
117	0	List<Parameter> rg = lastserv.getRunnerConfig()
118		.getParameters();
119	0	for (Parameter o : rg)
120		{
121	0	try
122		{
123	0	Parameter cpy = jalview.ws.jws2.ParameterUtils
124		.copyParameter(o);
125		} catch (Exception e)
126		{
127	0	System.err.println("Failed to copy " + o.getName());
128	0	e.printStackTrace();
129		} catch (Error e)
130		{
131	0	System.err.println("Failed to copy " + o.getName());
132	0	e.printStackTrace();
133		}
134		}
135		}
136		{
137	0	System.out.println("Testing param write:");
138	0	List<String> writeparam = null, readparam = null;
139	0	try
140		{
141	0	writeparam = jalview.ws.jws2.ParameterUtils
142		.writeParameterSet(
143		pr.getArguments(lastserv.getRunnerConfig()),
144		" ");
145	0	System.out.println("Testing param read :");
146	0	List<Option> pset = jalview.ws.jws2.ParameterUtils
147		.processParameters(writeparam,
148		lastserv.getRunnerConfig(), " ");
149	0	readparam = jalview.ws.jws2.ParameterUtils
150		.writeParameterSet(pset, " ");
151	0	Iterator<String> o = pr.getOptions().iterator(),
152		s = writeparam.iterator(), t = readparam.iterator();
153	0	boolean failed = false;
154	0	while (s.hasNext() && t.hasNext())
155		{
156	0	String on = o.next(), sn = s.next(), st = t.next();
157	0	if (!sn.equals(st))
158		{
159	0	System.out.println(
160		"Original was " + on + " Phase 1 wrote " + sn
161		+ "\tPhase 2 wrote " + st);
162	0	failed = true;
163		}
164		}
165	0	if (failed)
166		{
167	0	System.out.println(
168		"Original parameters:\n" + pr.getOptions());
169	0	System.out.println(
170		"Wrote parameters in first set:\n" + writeparam);
171	0	System.out.println(
172		"Wrote parameters in second set:\n" + readparam);
173
174		}
175		} catch (Exception e)
176		{
177	0	e.printStackTrace();
178		}
179		}
180	0	WsJobParameters pgui = new WsJobParameters(null, lastserv,
181		new JabaPreset(lastserv, pr), null);
182	0	JFrame jf = new JFrame(MessageManager
183		.formatMessage("label.ws_parameters_for", new String[]
184		{ lastserv.getActionText() }));
185	0	JPanel cont = new JPanel(new BorderLayout());
186	0	pgui.validate();
187	0	cont.setPreferredSize(pgui.getPreferredSize());
188	0	cont.add(pgui, BorderLayout.CENTER);
189	0	jf.setLayout(new BorderLayout());
190	0	jf.add(cont, BorderLayout.CENTER);
191	0	jf.validate();
192	0	final Thread thr = Thread.currentThread();
193	0	jf.addWindowListener(new WindowListener()
194		{
195
		- Uncovered Elements: 0 (0) Complexity: 1 Complexity Density: -
196	0	@Override...
197		public void windowActivated(WindowEvent e)
198		{
199		// TODO Auto-generated method stub
200
201		}
202
		- Uncovered Elements: 0 (0) Complexity: 1 Complexity Density: -
203	0	@Override...
204		public void windowClosed(WindowEvent e)
205		{
206		}
207
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
208	0	@Override...
209		public void windowClosing(WindowEvent e)
210		{
211	0	thr.interrupt();
212
213		}
214
		- Uncovered Elements: 0 (0) Complexity: 1 Complexity Density: -
215	0	@Override...
216		public void windowDeactivated(WindowEvent e)
217		{
218		// TODO Auto-generated method stub
219
220		}
221
		- Uncovered Elements: 0 (0) Complexity: 1 Complexity Density: -
222	0	@Override...
223		public void windowDeiconified(WindowEvent e)
224		{
225		// TODO Auto-generated method stub
226
227		}
228
		- Uncovered Elements: 0 (0) Complexity: 1 Complexity Density: -
229	0	@Override...
230		public void windowIconified(WindowEvent e)
231		{
232		// TODO Auto-generated method stub
233
234		}
235
		- Uncovered Elements: 0 (0) Complexity: 1 Complexity Density: -
236	0	@Override...
237		public void windowOpened(WindowEvent e)
238		{
239		// TODO Auto-generated method stub
240
241		}
242
243		});
244	0	jf.setVisible(true);
245	0	boolean inter = false;
246	0	while (!inter)
247		{
248	0	try
249		{
250	0	Thread.sleep(10000);
251		} catch (Exception e)
252		{
253	0	inter = true;
254		}
255	0	;
256		}
257	0	jf.dispose();
258		}
259		}
260		}
261		}
262		}
263
264		}