Classes

Class	Line #	Total Statements	Complexity	TOTAL Coverage	Actions
AWsJob	36	20	20	0.27527.5%	Show methods

Class AWsJob

Class AWsJob	Line # 36	Total Statements 20	Complexity 20	TOTAL Coverage 0.27527.5%
setJobId(String) : void   setJobId(String) : void	4646	1.01	1.01	1.0 1.0100%
setAllowedServerExceptions(int) : void   setAllowedServerExceptions(int) : void	6565	1.01	1.01	1.0 1.0100%
setJobnum(int) : void   setJobnum(int) : void	8080	1.01	1.01	0.0 0.00%
setSubmitted(boolean) : void   setSubmitted(boolean) : void	8989	1.01	1.01	1.0 1.0100%
setSubjobComplete(boolean) : void   setSubjobComplete(boolean) : void	9898	1.01	1.01	1.0 1.0100%
getJobnum() : int   getJobnum() : int	106106	1.01	1.01	0.0 0.00%
getJobId() : String   getJobId() : String	114114	1.01	1.01	0.0 0.00%
isCancelled() : boolean   isCancelled() : boolean	122122	1.01	1.01	0.0 0.00%
getAllowedServerExceptions() : int   getAllowedServerExceptions() : int	130130	1.01	1.01	0.0 0.00%
isSubmitted() : boolean   isSubmitted() : boolean	138138	1.01	1.01	1.0 1.0100%
isSubjobComplete() : boolean   isSubjobComplete() : boolean	146146	1.01	1.01	0.0 0.00%
AWsJob()   AWsJob()	162162	0.00	1.01	-1.0 -1.0 -
_defaultState() : String   _defaultState() : String	238238	2.02	1.01	0.0 0.00%
setPreset(WsParamSetI) : void   setPreset(WsParamSetI) : void	245245	1.01	1.01	0.0 0.00%
setArguments(List<ArgumentI>) : void   setArguments(List<ArgumentI>) : void	250250	1.01	1.01	0.0 0.00%
isPresetJob() : boolean   isPresetJob() : boolean	256256	1.01	1.01	0.0 0.00%
getArguments() : List<ArgumentI>   getArguments() : List<ArgumentI>	261261	1.01	1.01	0.0 0.00%
getPreset() : WsParamSetI   getPreset() : WsParamSetI	266266	1.01	1.01	0.0 0.00%
setnextChunk(long) : void   setnextChunk(long) : void	278278	1.01	1.01	0.0 0.00%
getNextChunk() : long   getNextChunk() : long	283283	1.01	1.01	0.0 0.00%

 

Contributing tests

Contributing tests

Select all

	Test contribution	Test	Result	Actions
	0.25	jalview.ws2.actions.alignment.AlignmentActionListenerNotifiedTest.jobStatusChanged_taskStatusChangedCalledWithJobStatusjalview.ws2.actions.alignment.AlignmentActionListenerNotifiedTest.jobStatusChanged_taskStatusChangedCalledWithJobStatus	1PASS

 

Source view

1		/*
2		* Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3		* Copyright (C) $$Year-Rel$$ The Jalview Authors
4		*
5		* This file is part of Jalview.
6		*
7		* Jalview is free software: you can redistribute it and/or
8		* modify it under the terms of the GNU General Public License
9		* as published by the Free Software Foundation, either version 3
10		* of the License, or (at your option) any later version.
11		*
12		* Jalview is distributed in the hope that it will be useful, but
13		* WITHOUT ANY WARRANTY; without even the implied warranty
14		* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15		* PURPOSE. See the GNU General Public License for more details.
16		*
17		* You should have received a copy of the GNU General Public License
18		* along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19		* The Jalview Authors are detailed in the 'AUTHORS' file.
20		*/
21		package jalview.ws;
22
23		import jalview.analysis.SeqsetUtils.SequenceInfo;
24		import jalview.ws.params.ArgumentI;
25		import jalview.ws.params.WsParamSetI;
26
27		import java.util.Hashtable;
28		import java.util.List;
29		import java.util.Map;
30
31		/**
32		* Generic properties for an individual job within a Web Service Client thread.
33		* Derived from jalview web services version 1 statuses, and revised for Jws2.
34		*/
35
		27.5% Uncovered Elements: 29 (40) Complexity: 20 Complexity Density: 1
36		public abstract class AWsJob
37		{
38		protected int jobnum = 0;
39
40		protected String jobId;
41
42		/**
43		* @param jobId
44		* the jobId to set
45		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
46	1	public void setJobId(String jobId)...
47		{
48	1	this.jobId = jobId;
49		}
50
51		/**
52		* has job been cancelled
53		*/
54		protected boolean cancelled = false;
55
56		/**
57		* number of exceptions left before job dies
58		*/
59		int allowedServerExceptions = 3;
60
61		/**
62		* @param allowedServerExceptions
63		* the allowedServerExceptions to set
64		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
65	1	public void setAllowedServerExceptions(int allowedServerExceptions)...
66		{
67	1	this.allowedServerExceptions = allowedServerExceptions;
68		}
69
70		/**
71		* has job been submitted to server ? if false, then no state info is
72		* available.
73		*/
74		protected boolean submitted = false;
75
76		/**
77		* @param jobnum
78		* the jobnum to set
79		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
80	0	public void setJobnum(int jobnum)...
81		{
82	0	this.jobnum = jobnum;
83		}
84
85		/**
86		* @param submitted
87		* the submitted to set
88		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
89	1	public void setSubmitted(boolean submitted)...
90		{
91	1	this.submitted = submitted;
92		}
93
94		/**
95		* @param subjobComplete
96		* the subjobComplete to set
97		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
98	1	public void setSubjobComplete(boolean subjobComplete)...
99		{
100	1	this.subjobComplete = subjobComplete;
101		}
102
103		/**
104		* @return the jobnum
105		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
106	0	public int getJobnum()...
107		{
108	0	return jobnum;
109		}
110
111		/**
112		* @return the jobId
113		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
114	0	public String getJobId()...
115		{
116	0	return jobId;
117		}
118
119		/**
120		* @return the cancelled
121		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
122	0	public boolean isCancelled()...
123		{
124	0	return cancelled;
125		}
126
127		/**
128		* @return the allowedServerExceptions
129		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
130	0	public int getAllowedServerExceptions()...
131		{
132	0	return allowedServerExceptions;
133		}
134
135		/**
136		* @return the submitted
137		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
138	1	public boolean isSubmitted()...
139		{
140	1	return submitted;
141		}
142
143		/**
144		* @return the subjobComplete
145		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
146	0	public boolean isSubjobComplete()...
147		{
148	0	return subjobComplete;
149		}
150
151		/**
152		* are all sub-jobs complete
153		*/
154		protected boolean subjobComplete = false;
155
156		protected WsParamSetI preset = null;
157
158		protected List<ArgumentI> arguments = null;
159
160		protected Hashtable<String, SequenceInfo> SeqNames = new Hashtable();
161
		- Uncovered Elements: 0 (0) Complexity: 1 Complexity Density: -
162	3	public AWsJob()...
163		{
164		}
165
166		/**
167		*
168		* @return true if job has completed and valid results are available
169		*/
170		abstract public boolean hasResults();
171
172		/**
173		*
174		* @return boolean true if job can be submitted.
175		*/
176		public abstract boolean hasValidInput();
177
178		/**
179		*
180		* @return true if job is running
181		*/
182		abstract public boolean isRunning();
183
184		/**
185		*
186		* @return true if job is queued
187		*/
188		abstract public boolean isQueued();
189
190		/**
191		*
192		* @return true if job has finished
193		*/
194		abstract public boolean isFinished();
195
196		/**
197		*
198		* @return true if the job failed due to some problem with the input data or
199		* parameters.
200		*/
201		abstract public boolean isFailed();
202
203		/**
204		*
205		* @return true if job failed due to an unhandled technical issue
206		*/
207		abstract public boolean isBroken();
208
209		/**
210		*
211		* @return true if there was a problem contacting the server.
212		*/
213		abstract public boolean isServerError();
214
215		/**
216		*
217		* @return true if the job has status text.
218		*/
219		abstract public boolean hasStatus();
220
221		/**
222		*
223		* @return status text for job to be displayed to user.
224		*/
225		abstract public String getStatus();
226
227		abstract public boolean hasResponse();
228
229		abstract public void clearResponse();
230
231		abstract public String getState();
232
233		/**
234		* generates response using the abstract service flags.
235		*
236		* @return a standard state response
237		*/
		0% Uncovered Elements: 2 (2) Complexity: 1 Complexity Density: 0.5
238	0	protected String _defaultState()...
239		{
240
241	0	String state = "";
242	0	return state;
243		}
244
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
245	0	public void setPreset(WsParamSetI jobpreset)...
246		{
247	0	preset = jobpreset;
248		}
249
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
250	0	public void setArguments(List<ArgumentI> paramset)...
251		{
252	0	arguments = paramset;
253
254		}
255
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
256	0	public boolean isPresetJob()...
257		{
258	0	return preset!=null && arguments==null;
259		}
260
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
261	0	public List<ArgumentI> getArguments()...
262		{
263	0	return arguments;
264		}
265
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
266	0	public WsParamSetI getPreset()...
267		{
268	0	return preset;
269		}
270
271		long nextChunk = 0;
272
273		/**
274		* update the record of the last position in the log file read for this job
275		*
276		* @param nextChunk
277		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
278	0	public void setnextChunk(long nextChunk)...
279		{
280	0	this.nextChunk = nextChunk;
281		}
282
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
283	0	public long getNextChunk()...
284		{
285	0	return nextChunk;
286		}
287		}