Build #2

Build: #2 failed Changes by Gitlab User

Build result summary

Details

Completed
Duration
11 minutes
Labels
None
Agent
Default Agent
Revision
377f1f52a15db66fd5768669a50bfda03250a6c7 377f1f52a15db66fd5768669a50bfda03250a6c7
Total tests
1899
Fixed in
#3 (Manual run by James Procter)

Responsible

No one has taken responsibility for this failure

Code commits

Author Commit Message Commit date
Gitlab User Gitlab User 377f1f52a15db66fd5768669a50bfda03250a6c7 377f1f52a15db66fd5768669a50bfda03250a6c7 Merge branch 'development/Release_2_11_5_Branch' into patch/JAL-4626_alphafoldVersionTracker
Ben Soares Ben Soares f306b783e2b09b813cffc5c6cd4bab2c46d74f12 m f306b783e2b09b813cffc5c6cd4bab2c46d74f12 Merge branch 'feature/JAL-4521_Allow_PCA_tree_for_one_seq_mul_ss' into 'development/Release_2_11_5_Branch'
JAL-4521 Allow tree calculation for one sequence multiple structure

See merge request jalview/jalview!23
Ben Soares <b.soares@dundee.ac.uk> Ben Soares <b.soares@dundee.ac.uk> 9369deda21dc14b2f5921ce5208142e89f295600 m 9369deda21dc14b2f5921ce5208142e89f295600 Merge branch 'bug/JAL-4604_new_getdown-launcher_jar_and_buggy_arguments_detection' into development/Release_2_11_5_Branch
Ben Soares <b.soares@dundee.ac.uk> Ben Soares <b.soares@dundee.ac.uk> 0d10b35174aa38a4a48c5965e683dabe47dcd553 m 0d10b35174aa38a4a48c5965e683dabe47dcd553 JAL-4604 Fixed Console logger being initiated too early and log level in props file not being set.  This was causing jalview.util.Log4jTest.testLog4j to fail.  Neatened the args in that test to use '--' to prevent mixed argstyle warning.
Renia Correya Renia Correya e3c46fcd8ca84107f389e7e5bf51d3fc4f10dbc3 m e3c46fcd8ca84107f389e7e5bf51d3fc4f10dbc3 JAL-4521 Allow tree calculation for SS for 1 seq and muliple structures
Allow calculation dialog/score model to be selected for secondary
structure when working with 1 sequence + many structures.

Tests

New test failures 1
Status Test View job Duration
Collapse Failed CommandLineOperationsNG testHeadlessModeOutputToStdout(./test/jalview/bin/argparser/testfiles/test1.fa ./test/jalview/bin/argparser/testfiles/test2.fa ./test/jalview/bin/argparser/testfiles/test3.fa --all --output -, test/jalview/bin/test1-3.fa, 13000) History
Clover and Tests 3 secs 
Classname: java.lang.AssertionError
Message: STDOUT from jalview command did not match the comparison file expected [>TEST1/1-4
AAAA
>TEST2/1-4
LLLL
>TEST3/1-5
AAARG
] but found [>TEST1/1-4
(63 more lines...)
Fixed tests 5
Status Test Failing since View job Duration
Successful HiDPISettingTest2 testHiDPISettings(4) History
Clover and Tests 2 secs
Successful HiDPISettingTest2 testHiDPISettings(2) History
Clover and Tests 2 secs
Successful HiDPISettingTest2 testHiDPISettings(1) History
Clover and Tests 2 secs
Successful HiDPISettingTest2 testHiDPISettings(10) History
Clover and Tests 2 secs
Successful Log4jTest testLog4j History
Clover and Tests 1 sec

JIRA issues

IssueDescriptionStatus
Unknown Issue TypeJAL-4521Could not obtain issue details from JIRA
Unknown Issue TypeJAL-4604Could not obtain issue details from JIRA
Unknown Issue TypeJAL-4626Could not obtain issue details from JIRA