Classes

Class	Line #	Total Statements	Complexity	TOTAL Coverage	Actions
UrlLinkTableModel	44	50	28	0.7349397573.5%	Show methods

Class UrlLinkTableModel

Class UrlLinkTableModel	Line # 44	Total Statements 50	Complexity 28	TOTAL Coverage 0.7349397573.5%
tableChanged(TableModelEvent) : void   tableChanged(TableModelEvent) : void	9595	3.03	2.02	0.6666667 0.666666766.7%
UrlLinkTableModel(UrlProviderI)   UrlLinkTableModel(UrlProviderI)	7171	10.010	3.03	0.9285714 0.928571492.9%
getRowCount() : int   getRowCount() : int	111111	3.03	2.02	0.6 0.660%
getColumnCount() : int   getColumnCount() : int	124124	1.01	1.01	1.0 1.0100%
getValueAt(int,int) : Object   getValueAt(int,int) : Object	130130	1.01	1.01	1.0 1.0100%
isCellEditable(int,int) : boolean   isCellEditable(int,int) : boolean	136136	1.01	1.01	1.0 1.0100%
isRowEditable(int) : boolean   isRowEditable(int) : boolean	149149	1.01	1.01	1.0 1.0100%
isRowDeletable(int) : boolean   isRowDeletable(int) : boolean	162162	1.01	1.01	1.0 1.0100%
setValueAt(Object,int,int) : void   setValueAt(Object,int,int) : void	169169	9.09	3.03	0.9230769 0.923076992.3%
getColumnClass(int) : Class<?>   getColumnClass(int) : Class<?>	196196	1.01	1.01	1.0 1.0100%
getColumnName(int) : String   getColumnName(int) : String	202202	1.01	1.01	1.0 1.0100%
removeRow(int) : void   removeRow(int) : void	208208	4.04	2.02	0.8333333 0.833333383.3%
insertRow(String,String) : int   insertRow(String,String) : int	223223	6.06	1.01	1.0 1.0100%
getPrimaryColumn() : int   getPrimaryColumn() : int	236236	1.01	1.01	0.0 0.00%
getNameColumn() : int   getNameColumn() : int	241241	1.01	1.01	0.0 0.00%
getDatabaseColumn() : int   getDatabaseColumn() : int	246246	1.01	1.01	0.0 0.00%
getIdColumn() : int   getIdColumn() : int	251251	1.01	1.01	0.0 0.00%
getUrlColumn() : int   getUrlColumn() : int	256256	1.01	1.01	0.0 0.00%
getSelectedColumn() : int   getSelectedColumn() : int	261261	1.01	1.01	0.0 0.00%
isUserEntry(Entry<? extends TableModel, ? extends Object>) : boolean   isUserEntry(Entry<? extends TableModel, ? extends Object>) : boolean	266266	1.01	1.01	0.0 0.00%
isUniqueName(String) : boolean   isUniqueName(String) : boolean	273273	1.01	1.01	0.0 0.00%

 

Contributing tests

Contributing tests

Select all

	Test contribution	Test	Result	Actions
	0.43373495	jalview.urls.UrlLinkTableModelTest.testValuesjalview.urls.UrlLinkTableModelTest.testValues	1PASS
	0.3493976	jalview.urls.UrlLinkTableModelTest.testRowDeletejalview.urls.UrlLinkTableModelTest.testRowDelete	1PASS
	0.31325302	jalview.urls.UrlLinkTableModelTest.testRowInsertjalview.urls.UrlLinkTableModelTest.testRowInsert	1PASS
	0.24096386	jalview.urls.UrlLinkTableModelTest.testInitialisationjalview.urls.UrlLinkTableModelTest.testInitialisation	1PASS
	0.24096386	jalview.urls.UrlLinkTableModelTest.testEditablejalview.urls.UrlLinkTableModelTest.testEditable	1PASS
	0.24096386	jalview.urls.UrlLinkTableModelTest.testDeletablejalview.urls.UrlLinkTableModelTest.testDeletable	1PASS
	0.24096386	jalview.urls.UrlLinkTableModelTest.testRowEditablejalview.urls.UrlLinkTableModelTest.testRowEditable	1PASS
	0.24096386	jalview.urls.UrlLinkTableModelTest.testCountsjalview.urls.UrlLinkTableModelTest.testCounts	1PASS
	0.24096386	jalview.urls.UrlLinkTableModelTest.testColumnsjalview.urls.UrlLinkTableModelTest.testColumns	1PASS
	0.16867469	jalview.bin.CommandsTest.commandsOpenTestjalview.bin.CommandsTest.commandsOpenTest	1PASS
	0.16867469	jalview.bin.CommandsTest.allLinkedIdsTestjalview.bin.CommandsTest.allLinkedIdsTest	1PASS

 

Source view

1		/*
2		* Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3		* Copyright (C) $$Year-Rel$$ The Jalview Authors
4		*
5		* This file is part of Jalview.
6		*
7		* Jalview is free software: you can redistribute it and/or
8		* modify it under the terms of the GNU General Public License
9		* as published by the Free Software Foundation, either version 3
10		* of the License, or (at your option) any later version.
11		*
12		* Jalview is distributed in the hope that it will be useful, but
13		* WITHOUT ANY WARRANTY; without even the implied warranty
14		* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15		* PURPOSE. See the GNU General Public License for more details.
16		*
17		* You should have received a copy of the GNU General Public License
18		* along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19		* The Jalview Authors are detailed in the 'AUTHORS' file.
20		*/
21
22		package jalview.urls;
23
24		import jalview.bin.Console;
25		import jalview.urls.api.UrlProviderI;
26		import jalview.util.UrlLink;
27
28		import java.util.Iterator;
29		import java.util.List;
30
31		import javax.swing.RowFilter.Entry;
32		import javax.swing.event.TableModelEvent;
33		import javax.swing.event.TableModelListener;
34		import javax.swing.table.AbstractTableModel;
35		import javax.swing.table.TableModel;
36
37		/**
38		* TableModel for UrlLinks table
39		*
40		* @author $author$
41		* @version $Revision$
42		*/
43
		73.5% Uncovered Elements: 22 (83) Complexity: 28 Complexity Density: 0.56
44		public class UrlLinkTableModel extends AbstractTableModel
45		{
46		// local storage of data
47		private List<UrlLinkDisplay> data;
48
49		// supplier of url data
50		private UrlProviderI dataProvider;
51
52		// list of columns to display in table in correct order
53		private List<String> displayColumns;
54
55		// row in table which is currently the primary
56		private int primaryRow;
57
58		/**
59		* UrlLinkTableModel constructor
60		*
61		* @param baseData
62		* base data set to be presented in table
63		* @param entryNames
64		* keys of entries in baseData's nested hashmap. Should match order
65		* in displayColNames
66		* @param displayColNames
67		* names of columns to display in order.
68		* @param keyColName
69		* name of column corresponding to keys in baseData
70		*/
		92.9% Uncovered Elements: 1 (14) Complexity: 3 Complexity Density: 0.3
71	19	public UrlLinkTableModel(UrlProviderI baseData)...
72		{
73	19	dataProvider = baseData;
74	19	data = baseData.getLinksForTable();
75	19	displayColumns = UrlLinkDisplay.getDisplayColumnNames();
76
77		// find the primary row
78	19	primaryRow = 0;
79	19	Iterator<UrlLinkDisplay> it = data.iterator();
80	6285	while (it.hasNext())
81		{
82	6285	if (it.next().getIsPrimary())
83		{
84	19	break;
85		}
86		else
87		{
88	6266	primaryRow++;
89		}
90		}
91
92		// set up listener which updates data source when table changes
93	19	this.addTableModelListener(new TableModelListener()
94		{
		66.7% Uncovered Elements: 1 (3) Complexity: 2 Complexity Density: 0.67
95	9	@Override...
96		public void tableChanged(TableModelEvent e)
97		{
98	9	try
99		{
100		// update the UrlProvider from data list
101	9	dataProvider.setUrlData(data);
102		} catch (IllegalArgumentException ex)
103		{
104	0	Console.error(ex.getMessage());
105		}
106		}
107		});
108
109		}
110
		60% Uncovered Elements: 2 (5) Complexity: 2 Complexity Density: 0.67
111	68	@Override...
112		public int getRowCount()
113		{
114	68	if (data == null)
115		{
116	0	return 0;
117		}
118		else
119		{
120	68	return data.size();
121		}
122		}
123
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
124	1	@Override...
125		public int getColumnCount()
126		{
127	1	return displayColumns.size();
128		}
129
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
130	55	@Override...
131		public Object getValueAt(int rowIndex, int columnIndex)
132		{
133	55	return data.get(rowIndex).getValue(columnIndex);
134		}
135
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
136	50	@Override...
137		public boolean isCellEditable(int rowIndex, int columnIndex)
138		{
139	50	return data.get(rowIndex).isEditable(columnIndex);
140		}
141
142		/**
143		* Determine if a row is editable indirectly (rather than directly in table as
144		* in isCellEditable)
145		*
146		* @param rowIndex
147		* @return true if row can be edited indirectly
148		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
149	10	public boolean isRowEditable(int rowIndex)...
150		{
151		// to edit, row must be a user entered row
152	10	return (dataProvider.isUserEntry(data.get(rowIndex).getId()));
153		}
154
155		/**
156		* Determine if a row is deletable
157		*
158		* @param rowIndex
159		* the row to be tested
160		* @return true if row can be deleted
161		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
162	10	public boolean isRowDeletable(int rowIndex)...
163		{
164		// to delete, row must be a user entered row, and not the default row
165	10	return (dataProvider.isUserEntry(data.get(rowIndex).getId())
166		&& !data.get(rowIndex).getIsPrimary());
167		}
168
		92.3% Uncovered Elements: 1 (13) Complexity: 3 Complexity Density: 0.33
169	6	@Override...
170		public void setValueAt(Object aValue, int rowIndex, int columnIndex)
171		{
172	6	if (columnIndex == UrlLinkDisplay.PRIMARY)
173		{
174		// Default url column: exactly one row must always be true
175	1	if (rowIndex != primaryRow)
176		{
177		// selected row is not currently the default
178		// set the current default to false
179	1	data.get(primaryRow).setValue(columnIndex, false);
180	1	fireTableRowsUpdated(primaryRow, primaryRow);
181
182		// set the default to be the selected row
183	1	primaryRow = rowIndex;
184	1	data.get(rowIndex).setValue(columnIndex, aValue);
185
186	1	fireTableRowsUpdated(rowIndex, rowIndex);
187		}
188		}
189		else
190		{
191	5	data.get(rowIndex).setValue(columnIndex, aValue);
192	5	fireTableRowsUpdated(rowIndex, rowIndex);
193		}
194		}
195
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
196	5	@Override...
197		public Class<?> getColumnClass(int columnIndex)
198		{
199	5	return getValueAt(0, columnIndex).getClass();
200		}
201
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
202	5	@Override...
203		public String getColumnName(int columnIndex)
204		{
205	5	return displayColumns.get(columnIndex);
206		}
207
		83.3% Uncovered Elements: 1 (6) Complexity: 2 Complexity Density: 0.5
208	1	public void removeRow(int rowIndex)...
209		{
210		// remove the row from data
211	1	data.remove(rowIndex);
212
213		// update default row
214	1	if (primaryRow > rowIndex)
215		{
216	1	primaryRow--;
217		}
218
219		// fire update which will update data source
220	1	fireTableRowsDeleted(rowIndex, rowIndex);
221		}
222
		100% Uncovered Elements: 0 (6) Complexity: 1 Complexity Density: 0.17
223	1	public int insertRow(String name, String url)...
224		{
225		// add a row to the data
226	1	UrlLink link = new UrlLink(name, url, name);
227	1	UrlLinkDisplay u = new UrlLinkDisplay(name, link, true, false);
228	1	int index = data.size();
229	1	data.add(u);
230
231		// fire update which will update data source
232	1	fireTableRowsInserted(index, index);
233	1	return index;
234		}
235
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
236	0	public int getPrimaryColumn()...
237		{
238	0	return UrlLinkDisplay.PRIMARY;
239		}
240
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
241	0	public int getNameColumn()...
242		{
243	0	return UrlLinkDisplay.NAME;
244		}
245
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
246	0	public int getDatabaseColumn()...
247		{
248	0	return UrlLinkDisplay.DATABASE;
249		}
250
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
251	0	public int getIdColumn()...
252		{
253	0	return UrlLinkDisplay.ID;
254		}
255
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
256	0	public int getUrlColumn()...
257		{
258	0	return UrlLinkDisplay.URL;
259		}
260
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
261	0	public int getSelectedColumn()...
262		{
263	0	return UrlLinkDisplay.SELECTED;
264		}
265
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
266	0	public boolean isUserEntry(...
267		Entry<? extends TableModel, ? extends Object> entry)
268		{
269	0	return dataProvider
270		.isUserEntry(entry.getStringValue(UrlLinkDisplay.ID));
271		}
272
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
273	0	public boolean isUniqueName(String name)...
274		{
275	0	return !dataProvider.contains(name);
276		}
277		}