Project overview

Branches:

37,272

Statements:

100,410

Methods:

14,812

Classes:

1,344

Files:

1,063

Packages:

111

LOC:

387,127

NCLOC:

242,009

Total complexity:

41,261

Complexity density:

0.41

Statements/Method:

6.78

Methods/Class:

11.02

Classes/Package:

12.11

Average method complexity:

2.79

1.	0.00%	Bits.letter_f() : void 1
2.	0.00%	RestJobThread.realiseResults(boolean) : void 57
3.	0.00%	VamsasAppDatastore.storeVAMSAS(AlignViewport,String) : boolean 57
4.	0.00%	GPreferences.initVisualTab() : JPanel 2
5.	0.00%	VamsasAppDatastore.updateToJalview() : int 50
6.	0.00%	Preferences.Preferences() 21
7.	0.00%	AlignFrame.paste(boolean) : void 48
8.	0.00%	Launcher.main(String[]) : void 48
9.	0.00%	JSONParser.parse(Reader,ContentHandler,boolean) : void 50
10.	0.00%	JSONML.parse(XMLTokener,boolean,JSONArray,boolean) : Object 48
11.	0.00%	GPreferences.initConnTabProxyPanel() : JPanel 2
12.	0.00%	XML.parse(XMLTokener,JSONObject,String,boolean) : boolean 37
13.	0.00%	SimpleBlastFile.parse() : void 43
14.	0.00%	VamsasAppDatastore.getjAlignmentAnnotation(jalview.datamodel.AlignmentI,uk.ac.vamsas.objects.core.RangeAnnotation) : jalview.datamodel.AlignmentAnnotation 43
15.	0.00%	GroupUrlLink.makeUrlsIf(boolean,Hashtable,boolean) : Object[] 42
16.	0.00%	AlignmentView.getUpdatedView(SequenceI[][],AlignmentOrder[],char) : Object[] 38
17.	0.00%	ccAnalysis.run() : MatrixI 21
18.	0.00%	SeqPanel.doEditSequence(boolean,boolean,int,int,boolean,SequenceGroup) : boolean 46
19.	0.00%	VamsasApplication.handleMessage(Message) : void 37
20.	0.00%	AADisorderClient.updateResultAnnotation(boolean) : void 33

Coverage Report