Coverage Report
File TDB_FTSData.java
Coverage histogram
31% of files have more coverage
Classes
| Class | Line # | Actions | |||
|---|---|---|---|---|---|
| TDB_FTSData | 35 | 17 | 13 |
Contributing tests
This file is covered by 7 tests.
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Source view
| 1 | /* | |
| 2 | * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$) | |
| 3 | * Copyright (C) $$Year-Rel$$ The Jalview Authors | |
| 4 | * | |
| 5 | * This file is part of Jalview. | |
| 6 | * | |
| 7 | * Jalview is free software: you can redistribute it and/or | |
| 8 | * modify it under the terms of the GNU General Public License | |
| 9 | * as published by the Free Software Foundation, either version 3 | |
| 10 | * of the License, or (at your option) any later version. | |
| 11 | * | |
| 12 | * Jalview is distributed in the hope that it will be useful, but | |
| 13 | * WITHOUT ANY WARRANTY; without even the implied warranty | |
| 14 | * of MERCHANTABILITY or FITNESS FOR A PARTICULAR | |
| 15 | * PURPOSE. See the GNU General Public License for more details. | |
| 16 | * | |
| 17 | * You should have received a copy of the GNU General Public License | |
| 18 | * along with Jalview. If not, see <http://www.gnu.org/licenses/>. | |
| 19 | * The Jalview Authors are detailed in the 'AUTHORS' file. | |
| 20 | */ | |
| 21 | package jalview.fts.service.threedbeacons; | |
| 22 | ||
| 23 | import java.util.Map; | |
| 24 | import java.util.Objects; | |
| 25 | ||
| 26 | import jalview.fts.api.FTSData; | |
| 27 | ||
| 28 | /** | |
| 29 | * TDB result bean - holds filtered fields for GUI and essential metadata fields | |
| 30 | * for back end | |
| 31 | * | |
| 32 | * @author jprocter | |
| 33 | * | |
| 34 | */ | |
| 35 | public class TDB_FTSData implements FTSData | |
| 36 | { | |
| 37 | String primaryKey; | |
| 38 | ||
| 39 | Object[] summaryRowData; | |
| 40 | ||
| 41 | /* | |
| 42 | * fields in the JSON object | |
| 43 | */ | |
| 44 | public static String Uniprot_Id = "id"; | |
| 45 | ||
| 46 | public static String Uniprot_Start = "uniprot_start"; | |
| 47 | ||
| 48 | public static String Uniprot_End = "uniprot_end"; | |
| 49 | ||
| 50 | public static String Provider = "provider"; | |
| 51 | ||
| 52 | public static String Model_id = "model_identifier"; | |
| 53 | ||
| 54 | public static String Model_Category = "model_category"; | |
| 55 | ||
| 56 | public static String Model_Type = "model_type"; | |
| 57 | ||
| 58 | public static String Model_Title = "model_title"; | |
| 59 | ||
| 60 | public static String Resolution = "resolution"; | |
| 61 | ||
| 62 | public static String Confidence = "confidence_avg_local_score"; | |
| 63 | ||
| 64 | public static String Confidence_Score_Type = "confidence_type"; | |
| 65 | ||
| 66 | public static String Confidence_Score_Version = "confidence_version"; | |
| 67 | ||
| 68 | public static String Coverage = "coverage"; | |
| 69 | ||
| 70 | public static String Sequence_Identity = "sequence_identity"; | |
| 71 | ||
| 72 | public static String Created_Date = "created"; | |
| 73 | ||
| 74 | public static String UniProt_Accession = "uniprot_accession"; | |
| 75 | ||
| 76 | public static String Url = "model_url"; | |
| 77 | ||
| 78 | public static String Page_URL = "model_page_url"; | |
| 79 | ||
| 80 | public static String Ensemble_Sample_Url = "ensembl_sample_url"; | |
| 81 | ||
| 82 | /** | |
| 83 | * original response from server | |
| 84 | */ | |
| 85 | Map<String, Object> tdb_entry; | |
| 86 | ||
| 87 | 5093 |  public TDB_FTSData(String primaryKey, |
| 88 | Map<String, Object> tdbJsonStructure, Object[] summaryData) | |
| 89 | { | |
| 90 | 5093 | this.primaryKey = primaryKey; |
| 91 | 5093 | tdb_entry = tdbJsonStructure; |
| 92 | 5093 | this.summaryRowData = summaryData; |
| 93 | } | |
| 94 | ||
| 95 | 2516 | public Object getField(String key) |
| 96 | { | |
| 97 | 2516 | return tdb_entry.get(key); |
| 98 | } | |
| 99 | ||
| 100 | 93882 | @Override |
| 101 | public Object[] getSummaryData() | |
| 102 | { | |
| 103 | 93882 | return summaryRowData; |
| 104 | } | |
| 105 | ||
| 106 | 0 | @Override |
| 107 | public Object getPrimaryKey() | |
| 108 | { | |
| 109 | 0 | return primaryKey; |
| 110 | } | |
| 111 | ||
| 112 | /** | |
| 113 | * Returns a string representation of this object; | |
| 114 | */ | |
| 115 | 254 | @Override |
| 116 | public String toString() | |
| 117 | { | |
| 118 | 254 | StringBuilder summaryFieldValues = new StringBuilder(); |
| 119 | 254 | for (Object summaryField : summaryRowData) |
| 120 | { | |
| 121 | 3308 | summaryFieldValues |
| 122 | 3308 | .append(summaryField == null ? " " : summaryField.toString()) |
| 123 | .append("\t"); | |
| 124 | } | |
| 125 | 254 | return summaryFieldValues.toString(); |
| 126 | } | |
| 127 | ||
| 128 | /** | |
| 129 | * Returns hash code value for this object | |
| 130 | */ | |
| 131 | 191 | @Override |
| 132 | public int hashCode() | |
| 133 | { | |
| 134 | 191 | return Objects.hash(primaryKey, this.toString()); |
| 135 | } | |
| 136 | ||
| 137 | 0 | @Override |
| 138 | public boolean equals(Object that) | |
| 139 | { | |
| 140 | 0 | return this.toString().equals(that.toString()); |
| 141 | } | |
| 142 | ||
| 143 | 2516 | public String getProvider() |
| 144 | { | |
| 145 | 2516 | return (String) getField(Provider); |
| 146 | } | |
| 147 | ||
| 148 | 0 | public String getModelViewUrl() |
| 149 | { | |
| 150 | 0 | return (String) getField(Page_URL); |
| 151 | } | |
| 152 | ||
| 153 | 0 | public String getModelId() |
| 154 | { | |
| 155 | 0 | return (String) getField(Model_id); |
| 156 | } | |
| 157 | ||
| 158 | 0 | public String getConfidenceScoreType() |
| 159 | { | |
| 160 | 0 | return (String) getField(Confidence_Score_Type); |
| 161 | } | |
| 162 | ||
| 163 | 0 | public String getConfidenceScoreVersion() |
| 164 | { | |
| 165 | 0 | return (String) getField(Confidence_Score_Version); |
| 166 | } | |
| 167 | ||
| 168 | } |