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package jalview.datamodel; |
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import java.awt.Color; |
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import jalview.renderer.ContactGeometry.contactInterval; |
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@author |
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| 83.1% |
Uncovered Elements: 10 (59) |
Complexity: 17 |
Complexity Density: 0.49 |
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public class ContactListImpl implements ContactListI |
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{ |
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ContactListProviderI clist; |
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| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
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public static ContactListI newContactList(ContactListProviderI list)... |
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{ |
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return new ContactListImpl(list); |
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} |
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| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
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7627 |
public ContactListImpl(ContactListProviderI list)... |
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{ |
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7627 |
clist = list; |
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} |
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| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
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@Override... |
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public int getPosition() |
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{ |
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return clist.getPosition(); |
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} |
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| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
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4652931 |
@Override... |
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public double getContactAt(int column) |
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{ |
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4652931 |
return clist.getContactAt(column); |
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} |
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| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
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4291272 |
@Override... |
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public int getContactHeight() |
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{ |
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4291272 |
return clist.getContactHeight(); |
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} |
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| 86.4% |
Uncovered Elements: 6 (44) |
Complexity: 10 |
Complexity Density: 0.36 |
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143760 |
@Override... |
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public ContactRange getRangeFor(int from_column, int to_column) |
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{ |
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143760 |
if (clist instanceof ContactListI) |
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{ |
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return ((ContactListI) clist).getRangeFor(from_column, to_column); |
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} |
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143760 |
if (from_column < 0) |
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{ |
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from_column = 0; |
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} |
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143760 |
if (to_column >= getContactHeight()) |
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{ |
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to_column = getContactHeight() - 1; |
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} |
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143760 |
ContactRange cr = new ContactRange(); |
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143760 |
cr.setFrom_column(from_column); |
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143760 |
cr.setTo_column(to_column); |
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143760 |
double tot = 0; |
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for (int i = from_column; i <= to_column; i++) |
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{ |
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442106 |
double contact = getContactAt(i); |
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442106 |
tot += contact; |
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442117 |
if (i == from_column) |
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{ |
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143759 |
cr.setMin(contact); |
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cr.setMax(contact); |
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cr.setMinPos(i); |
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cr.setMaxPos(i); |
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} |
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else |
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{ |
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298361 |
if (cr.getMax() < contact) |
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{ |
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69090 |
cr.setMax(contact); |
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69090 |
cr.setMaxPos(i); |
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} |
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298361 |
if (cr.getMin() < contact) |
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{ |
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69090 |
cr.setMin(contact); |
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69090 |
cr.setMinPos(i); |
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} |
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} |
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} |
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143758 |
if (tot > 0 && to_column > from_column) |
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{ |
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121859 |
cr.setMean(tot / (1 + to_column - from_column)); |
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} |
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else |
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{ |
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21899 |
cr.setMean(tot); |
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} |
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143758 |
return cr; |
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} |
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| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
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143714 |
@Override... |
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public int[] getMappedPositionsFor(int cStart, int cEnd) |
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{ |
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return clist.getMappedPositionsFor(cStart, cEnd); |
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} |
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| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
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3592 |
@Override... |
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public Color getColourForGroup() |
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{ |
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3592 |
return clist.getColourForGroup(); |
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} |
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} |