Classes

Class	Line #	Total Statements	Complexity	TOTAL Coverage	Actions
CustomUrlProviderTest	36	34	4	1.0100%	Show methods

Class CustomUrlProviderTest

Class CustomUrlProviderTest	Line # 36	Total Statements 34	Complexity 4	TOTAL Coverage 1.0100%
<init>, line 49()   <init>, line 49()	4949	4.04	1.01	1.0 1.0100%
<init>, line 59()   <init>, line 59()	5959	2.02	1.01	1.0 1.0100%
testDefaultUrl() : void   testDefaultUrl() : void	9898	12.012	1.01	1.0 1.0100%
testUrlLinks() : void   testUrlLinks() : void	130130	16.016	1.01	1.0 1.0100%

 

Contributing tests

Contributing tests

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	Test contribution	Test	Result	Actions
	0.4473684	jalview.urls.CustomUrlProviderTest.testUrlLinksjalview.urls.CustomUrlProviderTest.testUrlLinks	1PASS
	0.34210527	jalview.urls.CustomUrlProviderTest.testDefaultUrljalview.urls.CustomUrlProviderTest.testDefaultUrl	1PASS

 

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1		/*
2		* Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3		* Copyright (C) $$Year-Rel$$ The Jalview Authors
4		*
5		* This file is part of Jalview.
6		*
7		* Jalview is free software: you can redistribute it and/or
8		* modify it under the terms of the GNU General Public License
9		* as published by the Free Software Foundation, either version 3
10		* of the License, or (at your option) any later version.
11		*
12		* Jalview is distributed in the hope that it will be useful, but
13		* WITHOUT ANY WARRANTY; without even the implied warranty
14		* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15		* PURPOSE. See the GNU General Public License for more details.
16		*
17		* You should have received a copy of the GNU General Public License
18		* along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19		* The Jalview Authors are detailed in the 'AUTHORS' file.
20		*/
21		package jalview.urls;
22
23		import static org.testng.AssertJUnit.assertEquals;
24		import static org.testng.AssertJUnit.assertFalse;
25		import static org.testng.AssertJUnit.assertTrue;
26
27		import jalview.urls.api.UrlProviderI;
28		import jalview.util.UrlConstants;
29
30		import java.util.Arrays;
31		import java.util.HashMap;
32		import java.util.Vector;
33
34		import org.testng.annotations.Test;
35
		100% Uncovered Elements: 0 (38) Complexity: 4 Complexity Density: 0.12
36		public class CustomUrlProviderTest
37		{
38
39		private static final String cachedList = "TEST|http://someurl.blah/$DB_ACCESSION$|"
40		+ "ANOTHER|http://test/t$SEQUENCE_ID$|"
41		+ "TEST2|http://address/$SEQUENCE_ID$|SRS|"
42		+ "http://theSRSlink/$SEQUENCE_ID$";
43
44		private static final String unselectedList = "NON1|http://x/y/$DB_ACCESSION$|"
45		+ "NON2|http://a/b/c/$DB_ACCESSION";
46
47		private static final HashMap<String, String> urlMap = new HashMap<String, String>()
48		{
		100% Uncovered Elements: 0 (4) Complexity: 1 Complexity Density: 0.25
49	1	{...
50	1	put("TEST", "http://someurl.blah/$DB_ACCESSION$");
51	1	put("ANOTHER", "http://test/t$SEQUENCE_ID$");
52	1	put("TEST2", "http://address/$SEQUENCE_ID$");
53	1	put("SRS", "http://theSRSlink/$SEQUENCE_ID$");
54		}
55		};
56
57		private static final HashMap<String, String> unselUrlMap = new HashMap<String, String>()
58		{
		100% Uncovered Elements: 0 (2) Complexity: 1 Complexity Density: 0.5
59	1	{...
60	1	put("NON1", "http://x/y/$DB_ACCESSION$");
61	1	put("NON2", "http://a/b/c/$DB_ACCESSION");
62		}
63		};
64
65		private static final String[] dlinks = {
66		"TEST|http://someurl.blah/$DB_ACCESSION$",
67		"ANOTHER|http://test/t$SEQUENCE_ID$",
68		"TEST2|http://address/$SEQUENCE_ID$", UrlConstants.DEFAULT_STRING };
69
70		private static final String[] unselDlinks = {
71		"NON1|http://x/y/$DB_ACCESSION$", "NON2|http://a/b/c/$DB_ACCESSION" };
72
73		private static final Vector<String> displayLinks = new Vector<String>(
74		Arrays.asList(dlinks));
75
76		private static final Vector<String> unselDisplayLinks = new Vector<String>(
77		Arrays.asList(unselDlinks));
78
79		private static final String[] dlinks2 = {
80		"a|http://x.y.z/$SEQUENCE_ID$" };
81
82		private static final Vector<String> displayLinks2 = new Vector<String>(
83		Arrays.asList(dlinks2));
84
85		private static final String[] list1 = { "a" };
86
87		private static final String[] list2 = { "http://x.y.z/$SEQUENCE_ID$" };
88
89		private static final Vector<String> names = new Vector<String>(
90		Arrays.asList(list1));
91
92		private static final Vector<String> urls = new Vector<String>(
93		Arrays.asList(list2));
94
95		/*
96		* Test default url is set and returned correctly
97		*/
		100% Uncovered Elements: 0 (12) Complexity: 1 Complexity Density: 0.08 1PASS
98	1	@Test(groups = { "Functional" })...
99		public void testDefaultUrl()
100		{
101	1	UrlProviderI customProv = new CustomUrlProvider(cachedList,
102		unselectedList);
103
104		// default url can be set
105	1	assertTrue(customProv.setPrimaryUrl("ANOTHER"));
106
107		// supplied replacement id must be more than 4 chars
108	1	String result = customProv.getPrimaryUrl("123");
109	1	assertEquals(null, result);
110
111		// default url can be retrieved given a sequence id
112	1	result = customProv.getPrimaryUrl("seqid");
113	1	assertEquals("http://test/tseqid", result);
114
115		// if there is no default url it sets the default to null
116	1	assertFalse(customProv.setPrimaryUrl("No default"));
117	1	result = customProv.getPrimaryUrl("testid");
118	1	assertEquals(null, result);
119
120		// choosing the default picks the DEFAULT_STRING option
121	1	customProv.choosePrimaryUrl();
122	1	result = customProv.getPrimaryUrl("seqid");
123	1	assertEquals(UrlConstants.DEFAULT_STRING.split("\\|")[1].split("\\$")[0]
124		+ "seqid", result);
125		}
126
127		/*
128		* Test urls are set and returned correctly
129		*/
		100% Uncovered Elements: 0 (16) Complexity: 1 Complexity Density: 0.06 1PASS
130	1	@Test(groups = { "Functional" })...
131		public void testUrlLinks()
132		{
133		// creation from cached url list works + old links upgraded
134	1	UrlProviderI customProv = new CustomUrlProvider(cachedList,
135		unselectedList);
136	1	assertTrue(displayLinks.containsAll(customProv.getLinksForMenu()));
137
138		// creation from map works + old links upgraded
139	1	UrlProviderI customProv2 = new CustomUrlProvider(urlMap, unselUrlMap);
140	1	assertTrue(displayLinks.containsAll(customProv2.getLinksForMenu()));
141
142		// writing url links as a string works
143		// because UrlProvider does not guarantee order of links, we can't just
144		// compare the output of writeUrlsAsString to a string, hence the hoops here
145	1	String result = customProv.writeUrlsAsString(true);
146	1	UrlProviderI up = new CustomUrlProvider(result, "");
147	1	assertTrue(displayLinks.containsAll(up.getLinksForMenu()));
148
149	1	result = customProv.writeUrlsAsString(false);
150	1	up = new CustomUrlProvider("", result);
151	1	assertTrue(unselDisplayLinks.containsAll(up.getLinksForMenu()));
152
153	1	result = customProv2.writeUrlsAsString(true);
154	1	UrlProviderI up2 = new CustomUrlProvider(result, "");
155	1	assertTrue(displayLinks.containsAll(up2.getLinksForMenu()));
156
157	1	result = customProv2.writeUrlsAsString(false);
158	1	up2 = new CustomUrlProvider("", result);
159	1	assertTrue(displayLinks.containsAll(up2.getLinksForMenu()));
160		}
161		}