Coverage Report
File AnnotationRowBuilder.java
Coverage histogram
33% of files have more coverage
Classes
| Class | Line # | Actions | |||
|---|---|---|---|---|---|
| AnnotationRowBuilder | 26 | 21 | 18 |
Contributing tests
This file is covered by 22 tests.
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Source view
| 1 | /* | |
| 2 | * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$) | |
| 3 | * Copyright (C) $$Year-Rel$$ The Jalview Authors | |
| 4 | * | |
| 5 | * This file is part of Jalview. | |
| 6 | * | |
| 7 | * Jalview is free software: you can redistribute it and/or | |
| 8 | * modify it under the terms of the GNU General Public License | |
| 9 | * as published by the Free Software Foundation, either version 3 | |
| 10 | * of the License, or (at your option) any later version. | |
| 11 | * | |
| 12 | * Jalview is distributed in the hope that it will be useful, but | |
| 13 | * WITHOUT ANY WARRANTY; without even the implied warranty | |
| 14 | * of MERCHANTABILITY or FITNESS FOR A PARTICULAR | |
| 15 | * PURPOSE. See the GNU General Public License for more details. | |
| 16 | * | |
| 17 | * You should have received a copy of the GNU General Public License | |
| 18 | * along with Jalview. If not, see <http://www.gnu.org/licenses/>. | |
| 19 | * The Jalview Authors are detailed in the 'AUTHORS' file. | |
| 20 | */ | |
| 21 | package jalview.datamodel.annotations; | |
| 22 | ||
| 23 | import jalview.datamodel.Annotation; | |
| 24 | import jalview.structure.StructureImportSettings.TFType; | |
| 25 | ||
| 26 | public class AnnotationRowBuilder | |
| 27 | { | |
| 28 | ||
| 29 | String name; | |
| 30 | ||
| 31 | boolean hasDescription = false; | |
| 32 | ||
| 33 | String description; | |
| 34 | ||
| 35 | boolean hasMinMax = false; | |
| 36 | ||
| 37 | /** | |
| 38 | * the type of temperature factor plot (if it is one) | |
| 39 | */ | |
| 40 | // private TFType tfType = TFType.DEFAULT; | |
| 41 | private TFType tfType = null; | |
| 42 | ||
| 43 | 6 |  public void setTFType(TFType t) |
| 44 | { | |
| 45 | 6 | tfType = t; |
| 46 | } | |
| 47 | ||
| 48 | 89 | public TFType getTFType() |
| 49 | { | |
| 50 | 89 | return tfType; |
| 51 | } | |
| 52 | ||
| 53 | 178 | public String getName() |
| 54 | { | |
| 55 | 178 | return name; |
| 56 | } | |
| 57 | ||
| 58 | 0 | public void setName(String name) |
| 59 | { | |
| 60 | 0 | this.name = name; |
| 61 | } | |
| 62 | ||
| 63 | 89 | public boolean isHasDescription() |
| 64 | { | |
| 65 | 89 | return hasDescription; |
| 66 | } | |
| 67 | ||
| 68 | 0 | public void setHasDescription(boolean hasDescription) |
| 69 | { | |
| 70 | 0 | this.hasDescription = hasDescription; |
| 71 | } | |
| 72 | ||
| 73 | 0 | public String getDescription() |
| 74 | { | |
| 75 | 0 | return description; |
| 76 | } | |
| 77 | ||
| 78 | 0 | public void setDescription(String description) |
| 79 | { | |
| 80 | 0 | this.description = description; |
| 81 | } | |
| 82 | ||
| 83 | 89 | public boolean isHasMinMax() |
| 84 | { | |
| 85 | 89 | return hasMinMax; |
| 86 | } | |
| 87 | ||
| 88 | 0 | public void setHasMinMax(boolean hasMinMax) |
| 89 | { | |
| 90 | 0 | this.hasMinMax = hasMinMax; |
| 91 | } | |
| 92 | ||
| 93 | 6 | public float getMin() |
| 94 | { | |
| 95 | 6 | return min; |
| 96 | } | |
| 97 | ||
| 98 | 0 | public void setMin(float min) |
| 99 | { | |
| 100 | 0 | this.min = min; |
| 101 | } | |
| 102 | ||
| 103 | 6 | public float getMax() |
| 104 | { | |
| 105 | 6 | return max; |
| 106 | } | |
| 107 | ||
| 108 | 0 | public void setMax(float max) |
| 109 | { | |
| 110 | 0 | this.max = max; |
| 111 | } | |
| 112 | ||
| 113 | float min, max; | |
| 114 | ||
| 115 | 154 | public AnnotationRowBuilder(String string) |
| 116 | { | |
| 117 | 154 | name = string; |
| 118 | } | |
| 119 | ||
| 120 | 0 | public AnnotationRowBuilder(String name, float min, float max, TFType tft) |
| 121 | { | |
| 122 | 0 | this(name, min, max); |
| 123 | 0 | setTFType(tft); |
| 124 | } | |
| 125 | ||
| 126 | 0 | public AnnotationRowBuilder(String name, float min, float max) |
| 127 | { | |
| 128 | 0 | this(name); |
| 129 | 0 | this.min = min; |
| 130 | 0 | this.max = max; |
| 131 | 0 | this.hasMinMax = true; |
| 132 | } | |
| 133 | ||
| 134 | /** | |
| 135 | * override this to apply some form of transformation to the annotation - eg a | |
| 136 | * colourscheme | |
| 137 | * | |
| 138 | * @param annotation | |
| 139 | */ | |
| 140 | 14583 | public void processAnnotation(Annotation annotation) |
| 141 | { | |
| 142 | ||
| 143 | } | |
| 144 | } |