Classes

Class	Line #	Total Statements	Complexity	TOTAL Coverage	Actions
PurinePyrimidineColourScheme	31	4	4	0.00%	Show methods

Class PurinePyrimidineColourScheme

Class PurinePyrimidineColourScheme	Line # 31	Total Statements 4	Complexity 4	TOTAL Coverage 0.00%
PurinePyrimidineColourScheme()   PurinePyrimidineColourScheme()	3636	1.01	1.01	0.0 0.00%
isNucleotideSpecific() : boolean   isNucleotideSpecific() : boolean	4242	1.01	1.01	0.0 0.00%
getSchemeName() : String   getSchemeName() : String	4848	1.01	1.01	0.0 0.00%
getInstance(AlignViewportI,AnnotatedCollectionI) : ColourSchemeI   getInstance(AlignViewportI,AnnotatedCollectionI) : ColourSchemeI	5858	1.01	1.01	0.0 0.00%

 

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1		/*
2		* Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3		* Copyright (C) $$Year-Rel$$ The Jalview Authors
4		*
5		* This file is part of Jalview.
6		*
7		* Jalview is free software: you can redistribute it and/or
8		* modify it under the terms of the GNU General Public License
9		* as published by the Free Software Foundation, either version 3
10		* of the License, or (at your option) any later version.
11		*
12		* Jalview is distributed in the hope that it will be useful, but
13		* WITHOUT ANY WARRANTY; without even the implied warranty
14		* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15		* PURPOSE. See the GNU General Public License for more details.
16		*
17		* You should have received a copy of the GNU General Public License
18		* along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19		* The Jalview Authors are detailed in the 'AUTHORS' file.
20		*/
21		package jalview.schemes;
22
23		import jalview.api.AlignViewportI;
24		import jalview.datamodel.AnnotatedCollectionI;
25
26		/**
27		* Class is based off of NucleotideColourScheme
28		*
29		* @author Lauren Michelle Lui
30		*/
		0% Uncovered Elements: 8 (8) Complexity: 4 Complexity Density: 1
31		public class PurinePyrimidineColourScheme extends ResidueColourScheme
32		{
33		/**
34		* Creates a new PurinePyrimidineColourScheme object.
35		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
36	0	public PurinePyrimidineColourScheme()...
37		{
38	0	super(ResidueProperties.purinepyrimidineIndex,
39		ResidueProperties.purinepyrimidine);
40		}
41
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
42	0	@Override...
43		public boolean isNucleotideSpecific()
44		{
45	0	return true;
46		}
47
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
48	0	@Override...
49		public String getSchemeName()
50		{
51	0	return JalviewColourScheme.PurinePyrimidine.toString();
52		}
53
54		/**
55		* Returns a new instance of this colour scheme with which the given data may
56		* be coloured
57		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
58	0	@Override...
59		public ColourSchemeI getInstance(AlignViewportI view,
60		AnnotatedCollectionI coll)
61		{
62	0	return new PurinePyrimidineColourScheme();
63		}
64		}