Classes

Class	Line #	Total Statements	Complexity	TOTAL Coverage	Actions
FTSRestRequest	36	32	28	0.00%	Show methods

Class FTSRestRequest

Class FTSRestRequest	Line # 36	Total Statements 32	Complexity 28	TOTAL Coverage 0.00%
getFieldToSearchBy() : String   getFieldToSearchBy() : String	6565	1.01	1.01	0.0 0.00%
setFieldToSearchBy(String) : void   setFieldToSearchBy(String) : void	7070	1.01	1.01	0.0 0.00%
getSearchTerm() : String   getSearchTerm() : String	7575	1.01	1.01	0.0 0.00%
setSearchTerm(String) : void   setSearchTerm(String) : void	8080	1.01	1.01	0.0 0.00%
isAllowEmptySeq() : boolean   isAllowEmptySeq() : boolean	8585	1.01	1.01	0.0 0.00%
setAllowEmptySeq(boolean) : void   setAllowEmptySeq(boolean) : void	9090	1.01	1.01	0.0 0.00%
getResponseSize() : int   getResponseSize() : int	9595	1.01	1.01	0.0 0.00%
setResponseSize(int) : void   setResponseSize(int) : void	100100	1.01	1.01	0.0 0.00%
getWantedFields() : Collection<FTSDataColumnI>   getWantedFields() : Collection<FTSDataColumnI>	105105	1.01	1.01	0.0 0.00%
setWantedFields(Collection<FTSDataColumnI>) : void   setWantedFields(Collection<FTSDataColumnI>) : void	110110	1.01	1.01	0.0 0.00%
getFieldToSortBy() : String   getFieldToSortBy() : String	115115	1.01	1.01	0.0 0.00%
setFieldToSortBy(String,boolean) : void   setFieldToSortBy(String,boolean) : void	120120	2.02	1.01	0.0 0.00%
isAscending() : boolean   isAscending() : boolean	127127	1.01	1.01	0.0 0.00%
getAssociatedSequence() : SequenceI   getAssociatedSequence() : SequenceI	132132	1.01	1.01	0.0 0.00%
setAssociatedSequence(SequenceI) : void   setAssociatedSequence(SequenceI) : void	137137	1.01	1.01	0.0 0.00%
isAllowUnpublishedEntries() : boolean   isAllowUnpublishedEntries() : boolean	142142	1.01	1.01	0.0 0.00%
setAllowUnpublishedEntries(boolean) : void   setAllowUnpublishedEntries(boolean) : void	147147	1.01	1.01	0.0 0.00%
isFacet() : boolean   isFacet() : boolean	152152	1.01	1.01	0.0 0.00%
setFacet(boolean) : void   setFacet(boolean) : void	157157	1.01	1.01	0.0 0.00%
getFacetPivot() : String   getFacetPivot() : String	162162	1.01	1.01	0.0 0.00%
setFacetPivot(String) : void   setFacetPivot(String) : void	167167	1.01	1.01	0.0 0.00%
getFacetPivotMinCount() : int   getFacetPivotMinCount() : int	172172	1.01	1.01	0.0 0.00%
setFacetPivotMinCount(int) : void   setFacetPivotMinCount(int) : void	177177	1.01	1.01	0.0 0.00%
getOffSet() : int   getOffSet() : int	182182	1.01	1.01	0.0 0.00%
setOffSet(int) : void   setOffSet(int) : void	187187	1.01	1.01	0.0 0.00%
getFieldIndex(String) : int   getFieldIndex(String) : int	199199	6.06	3.03	0.0 0.00%

 

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1		/*
2		* Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3		* Copyright (C) $$Year-Rel$$ The Jalview Authors
4		*
5		* This file is part of Jalview.
6		*
7		* Jalview is free software: you can redistribute it and/or
8		* modify it under the terms of the GNU General Public License
9		* as published by the Free Software Foundation, either version 3
10		* of the License, or (at your option) any later version.
11		*
12		* Jalview is distributed in the hope that it will be useful, but
13		* WITHOUT ANY WARRANTY; without even the implied warranty
14		* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15		* PURPOSE. See the GNU General Public License for more details.
16		*
17		* You should have received a copy of the GNU General Public License
18		* along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19		* The Jalview Authors are detailed in the 'AUTHORS' file.
20		*/
21
22		package jalview.fts.core;
23
24		import jalview.bin.Cache;
25		import jalview.datamodel.SequenceI;
26		import jalview.fts.api.FTSDataColumnI;
27
28		import java.util.Collection;
29
30		/**
31		* Represents the FTS request to be consumed by the FTSRestClient
32		*
33		* @author tcnofoegbu
34		*
35		*/
		0% Uncovered Elements: 62 (62) Complexity: 28 Complexity Density: 0.88
36		public class FTSRestRequest
37		{
38		private String fieldToSearchBy;
39
40		private String searchTerm;
41
42		private String fieldToSortBy;
43
44		private SequenceI associatedSequence;
45
46		private boolean allowEmptySequence;
47
48		private boolean allowUnpublishedEntries = Cache
49		.getDefault("ALLOW_UNPUBLISHED_PDB_QUERYING", false);
50
51		private boolean facet;
52
53		private String facetPivot;
54
55		private int facetPivotMinCount;
56
57		private int responseSize;
58
59		private int offSet;
60
61		private boolean isSortAscending;
62
63		private Collection<FTSDataColumnI> wantedFields;
64
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
65	0	public String getFieldToSearchBy()...
66		{
67	0	return fieldToSearchBy;
68		}
69
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
70	0	public void setFieldToSearchBy(String fieldToSearchBy)...
71		{
72	0	this.fieldToSearchBy = fieldToSearchBy;
73		}
74
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
75	0	public String getSearchTerm()...
76		{
77	0	return searchTerm;
78		}
79
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
80	0	public void setSearchTerm(String searchTerm)...
81		{
82	0	this.searchTerm = searchTerm;
83		}
84
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
85	0	public boolean isAllowEmptySeq()...
86		{
87	0	return allowEmptySequence;
88		}
89
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
90	0	public void setAllowEmptySeq(boolean allowEmptySeq)...
91		{
92	0	this.allowEmptySequence = allowEmptySeq;
93		}
94
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
95	0	public int getResponseSize()...
96		{
97	0	return responseSize;
98		}
99
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
100	0	public void setResponseSize(int responseSize)...
101		{
102	0	this.responseSize = responseSize;
103		}
104
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
105	0	public Collection<FTSDataColumnI> getWantedFields()...
106		{
107	0	return wantedFields;
108		}
109
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
110	0	public void setWantedFields(Collection<FTSDataColumnI> wantedFields)...
111		{
112	0	this.wantedFields = wantedFields;
113		}
114
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
115	0	public String getFieldToSortBy()...
116		{
117	0	return fieldToSortBy;
118		}
119
		0% Uncovered Elements: 2 (2) Complexity: 1 Complexity Density: 0.5
120	0	public void setFieldToSortBy(String fieldToSortBy,...
121		boolean isSortAscending)
122		{
123	0	this.fieldToSortBy = fieldToSortBy;
124	0	this.isSortAscending = isSortAscending;
125		}
126
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
127	0	public boolean isAscending()...
128		{
129	0	return isSortAscending;
130		}
131
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
132	0	public SequenceI getAssociatedSequence()...
133		{
134	0	return associatedSequence;
135		}
136
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
137	0	public void setAssociatedSequence(SequenceI associatedSequence)...
138		{
139	0	this.associatedSequence = associatedSequence;
140		}
141
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
142	0	public boolean isAllowUnpublishedEntries()...
143		{
144	0	return allowUnpublishedEntries;
145		}
146
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
147	0	public void setAllowUnpublishedEntries(boolean allowUnpublishedEntries)...
148		{
149	0	this.allowUnpublishedEntries = allowUnpublishedEntries;
150		}
151
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
152	0	public boolean isFacet()...
153		{
154	0	return facet;
155		}
156
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
157	0	public void setFacet(boolean facet)...
158		{
159	0	this.facet = facet;
160		}
161
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
162	0	public String getFacetPivot()...
163		{
164	0	return facetPivot;
165		}
166
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
167	0	public void setFacetPivot(String facetPivot)...
168		{
169	0	this.facetPivot = facetPivot;
170		}
171
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
172	0	public int getFacetPivotMinCount()...
173		{
174	0	return facetPivotMinCount;
175		}
176
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
177	0	public void setFacetPivotMinCount(int facetPivotMinCount)...
178		{
179	0	this.facetPivotMinCount = facetPivotMinCount;
180		}
181
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
182	0	public int getOffSet()...
183		{
184	0	return offSet;
185		}
186
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
187	0	public void setOffSet(int offSet)...
188		{
189	0	this.offSet = offSet;
190		}
191
192		/**
193		* locate column given field name
194		*
195		* @param string
196		* - field name
197		* @return -1 if not located
198		*/
		0% Uncovered Elements: 10 (10) Complexity: 3 Complexity Density: 0.5
199	0	public int getFieldIndex(String string)...
200		{
201	0	int i = associatedSequence != null ? 1 : 0;
202	0	for (FTSDataColumnI field : wantedFields)
203		{
204	0	if (field.getName().equals(string))
205		{
206	0	return i;
207		}
208	0	i++;
209		}
210	0	return -1;
211		}
212		}