Classes

Class	Line #	Total Statements	Complexity	TOTAL Coverage	Actions
SequenceDummy	23	5	4	0.00%	Show methods

Class SequenceDummy

Class SequenceDummy	Line # 23	Total Statements 5	Complexity 4	TOTAL Coverage 0.00%
SequenceDummy(String)   SequenceDummy(String)	2525	1.01	1.01	0.0 0.00%
become(SequenceI) : void   become(SequenceI) : void	3737	2.02	1.01	0.0 0.00%
isDummy() : boolean   isDummy() : boolean	4949	1.01	1.01	0.0 0.00%
getDisplayId(boolean) : String   getDisplayId(boolean) : String	5757	1.01	1.01	0.0 0.00%

 

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1		/*
2		* Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3		* Copyright (C) $$Year-Rel$$ The Jalview Authors
4		*
5		* This file is part of Jalview.
6		*
7		* Jalview is free software: you can redistribute it and/or
8		* modify it under the terms of the GNU General Public License
9		* as published by the Free Software Foundation, either version 3
10		* of the License, or (at your option) any later version.
11		*
12		* Jalview is distributed in the hope that it will be useful, but
13		* WITHOUT ANY WARRANTY; without even the implied warranty
14		* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15		* PURPOSE. See the GNU General Public License for more details.
16		*
17		* You should have received a copy of the GNU General Public License
18		* along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19		* The Jalview Authors are detailed in the 'AUTHORS' file.
20		*/
21		package jalview.datamodel;
22
		0% Uncovered Elements: 9 (9) Complexity: 4 Complexity Density: 0.8
23		public class SequenceDummy extends Sequence
24		{
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
25	0	public SequenceDummy(String sequenceId)...
26		{
27	0	super(sequenceId, "THISAPLACEHOLDER");
28		}
29
30		private boolean dummy = true;
31
32		/**
33		* become a proxy for mseq, merging any existing annotation on this sequence
34		*
35		* @param mseq
36		*/
		0% Uncovered Elements: 2 (2) Complexity: 1 Complexity Density: 0.5
37	0	public void become(SequenceI mseq)...
38		{
39	0	initSeqFrom(mseq, null);
40	0	dummy = false;
41		}
42
43		/**
44		* Test if the SequenceDummy has been promoted to a real sequence via
45		* SequenceDummy.become
46		*
47		* @return true if this is a placeholder and contains no actual sequence data
48		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
49	0	public boolean isDummy()...
50		{
51	0	return dummy;
52		}
53
54		/**
55		* Always suppress /start-end for display name as we don't know it
56		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
57	0	@Override...
58		public String getDisplayId(boolean jvsuffix)
59		{
60		// required for correct behaviour of SequenceIdMatcher
61	0	return super.getDisplayId(false);
62		}
63		}