Annotation Annotation.ThresholdLine AnnotationColourScheme AnnotationElement DoubleMatrix DoubleVector Feature Feature.OtherData FeatureMatcher FeatureMatcherSet FeatureMatcherSet.CompoundMatcher FilterBy JalviewModel JalviewModel.FeatureSettings JalviewModel.FeatureSettings.Group JalviewModel.FeatureSettings.Setting JalviewModel.JGroup JalviewModel.JSeq JalviewModel.JSeq.Pdbids JalviewModel.JSeq.Pdbids.StructureState JalviewModel.PcaViewer JalviewModel.PcaViewer.Axis JalviewModel.PcaViewer.SeqPointMax JalviewModel.PcaViewer.SeqPointMin JalviewModel.PcaViewer.SequencePoint JalviewModel.Tree JalviewModel.Viewport JalviewModel.Viewport.HiddenColumns JalviewModel.Viewport.Overview JalviewUserColours JalviewUserColours.Colour JalviewUserColours.Filter MapListType MapListType.MapListFrom MapListType.MapListTo MapOnAMatrixType Mapping MatrixType NoValueColour ObjectFactory PcaDataType Pdbentry Pdbentry.Property Sequence Sequence.DBRef SequenceSet SequenceSet.SequenceSetProperties SequenceType VAMSAS