Package	Files	Average Method Complexity	TOTAL Coverage
jalview.xml.binding.jalview jalview.xml.binding.jalview	27.0 27	1.108871 1.11	0.7854385 0.785438578.5%

Class	Methods	Average Method Complexity	TOTAL Coverage
AlcodonFrame AlcodonFrame	2.0 2	2.0 2	0.0 0.00%
AlcodonFrame.AlcodMap AlcodonFrame.AlcodMap	4.0 4	1.0 1	0.0 0.00%
AlcodonFrame.Alcodon AlcodonFrame.Alcodon	6.0 6	1.0 1	0.0 0.00%
JalviewModel.JSeq.RnaViewer JalviewModel.JSeq.RnaViewer	17.0 17	1.0588236 1.06	0.0 0.00%
JalviewModel.JSeq.RnaViewer.SecondaryStructure JalviewModel.JSeq.RnaViewer.SecondaryStructure	8.0 8	1.0 1	0.0 0.00%
JalviewModel.UserColours JalviewModel.UserColours	4.0 4	1.0 1	0.0 0.00%
JalviewModel.Viewport.CalcIdParam JalviewModel.Viewport.CalcIdParam	6.0 6	1.1666666 1.17	0.0 0.00%
Property Property	4.0 4	1.0 1	0.0 0.00%
ThresholdType ThresholdType	2.0 2	1.0 1	0.0 0.00%
WebServiceParameterSet WebServiceParameterSet	9.0 9	1.1111112 1.11	0.0 0.00%
ObjectFactory ObjectFactory	59.0 59	1.0 1	0.05982906 0.059829066%
FilterBy FilterBy	3.0 3	1.3333334 1.33	0.18181819 0.1818181918.2%
NoValueColour NoValueColour	3.0 3	1.3333334 1.33	0.18181819 0.1818181918.2%
MapOnAMatrixType MapOnAMatrixType	7.0 7	1.1428572 1.14	0.44444445 0.4444444544.4%
Mapping Mapping	6.0 6	1.0 1	0.5 0.550%
VAMSAS VAMSAS	2.0 2	2.0 2	0.5 0.550%
JalviewUserColours JalviewUserColours	6.0 6	1.3333334 1.33	0.7 0.770%
Sequence Sequence	5.0 5	1.2 1.2	0.71428573 0.7142857371.4%
JalviewModel.JSeq.Pdbids.StructureState JalviewModel.JSeq.Pdbids.StructureState	22.0 22	1.1363636 1.14	0.8214286 0.821428682.1%
JalviewModel JalviewModel	14.0 14	1.4285715 1.43	0.84615386 0.8461538684.6%
MatrixType MatrixType	17.0 17	1.1764706 1.18	0.8695652 0.869565287%
JalviewModel.Tree JalviewModel.Tree	38.0 38	1.0526316 1.05	0.9047619 0.904761990.5%
DoubleMatrix DoubleMatrix	9.0 9	1.1111112 1.11	0.90909094 0.9090909490.9%
JalviewModel.Viewport JalviewModel.Viewport	108.0 108	1.1388888 1.14	0.9130435 0.913043591.3%
Annotation Annotation	43.0 43	1.1395348 1.14	0.91818184 0.9181818491.8%
SequenceSet SequenceSet	9.0 9	1.5555556 1.56	0.92105263 0.9210526392.1%
AnnotationColourScheme AnnotationColourScheme	16.0 16	1.0 1	0.9375 0.937593.8%
Feature Feature	15.0 15	1.0666667 1.07	0.9411765 0.941176594.1%
JalviewModel.JGroup JalviewModel.JGroup	41.0 41	1.1219512 1.12	0.9411765 0.941176594.1%
JalviewUserColours.Colour JalviewUserColours.Colour	21.0 21	1.0952381 1.1	0.96 0.9696%
JalviewModel.FeatureSettings.Setting JalviewModel.FeatureSettings.Setting	27.0 27	1.074074 1.07	0.9677419 0.967741996.8%
JalviewModel.JSeq JalviewModel.JSeq	16.0 16	1.25 1.25	0.9791667 0.979166797.9%
Annotation.ThresholdLine Annotation.ThresholdLine	6.0 6	1.0 1	1.0 1.0100%
AnnotationElement AnnotationElement	12.0 12	1.0 1	1.0 1.0100%
DoubleVector DoubleVector	1.0 1	2.0 2	1.0 1.0100%
Feature.OtherData Feature.OtherData	6.0 6	1.0 1	1.0 1.0100%
FeatureMatcher FeatureMatcher	7.0 7	1.1428572 1.14	1.0 1.0100%
FeatureMatcherSet FeatureMatcherSet	4.0 4	1.0 1	1.0 1.0100%
FeatureMatcherSet.CompoundMatcher FeatureMatcherSet.CompoundMatcher	3.0 3	1.3333334 1.33	1.0 1.0100%
JalviewModel.FeatureSettings JalviewModel.FeatureSettings	2.0 2	2.0 2	1.0 1.0100%
JalviewModel.FeatureSettings.Group JalviewModel.FeatureSettings.Group	4.0 4	1.0 1	1.0 1.0100%
JalviewModel.JSeq.Pdbids JalviewModel.JSeq.Pdbids	1.0 1	2.0 2	1.0 1.0100%
JalviewModel.PcaViewer JalviewModel.PcaViewer	42.0 42	1.0476191 1.05	1.0 1.0100%
JalviewModel.PcaViewer.Axis JalviewModel.PcaViewer.Axis	6.0 6	1.0 1	1.0 1.0100%
JalviewModel.PcaViewer.SeqPointMax JalviewModel.PcaViewer.SeqPointMax	6.0 6	1.0 1	1.0 1.0100%
JalviewModel.PcaViewer.SeqPointMin JalviewModel.PcaViewer.SeqPointMin	6.0 6	1.0 1	1.0 1.0100%
JalviewModel.PcaViewer.SequencePoint JalviewModel.PcaViewer.SequencePoint	8.0 8	1.0 1	1.0 1.0100%
JalviewModel.Viewport.HiddenColumns JalviewModel.Viewport.HiddenColumns	4.0 4	1.0 1	1.0 1.0100%
JalviewModel.Viewport.Overview JalviewModel.Viewport.Overview	18.0 18	1.0 1	1.0 1.0100%
JalviewUserColours.Filter JalviewUserColours.Filter	4.0 4	1.0 1	1.0 1.0100%
MapListType MapListType	6.0 6	1.3333334 1.33	1.0 1.0100%
MapListType.MapListFrom MapListType.MapListFrom	4.0 4	1.0 1	1.0 1.0100%
MapListType.MapListTo MapListType.MapListTo	4.0 4	1.0 1	1.0 1.0100%
PcaDataType PcaDataType	6.0 6	1.0 1	1.0 1.0100%
Pdbentry Pdbentry	7.0 7	1.1428572 1.14	1.0 1.0100%
Pdbentry.Property Pdbentry.Property	4.0 4	1.0 1	1.0 1.0100%
Sequence.DBRef Sequence.DBRef	12.0 12	1.1666666 1.17	1.0 1.0100%
SequenceSet.SequenceSetProperties SequenceSet.SequenceSetProperties	4.0 4	1.0 1	1.0 1.0100%
SequenceType SequenceType	8.0 8	1.0 1	1.0 1.0100%